scaffold_76, scaffold_76 (supercontig) Nannochloropsis oceanica

Overview
Namescaffold_76
Unique Namescaffold_76
Typesupercontig
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length67502
Alignment locationjgi.p|Nanoce1779_2|410335:4617..7004 -
Alignment locationjgi.p|Nanoce1779_2|410335:4617..7004 -
Alignment locationCDS_10670:6813..6904 -
Alignment locationCDS_10670:6540..6579 -
Alignment locationCDS_10670:4788..6395 -
Alignment locationjgi.p|Nanoce1779_2|511535:22290..22520 -
Alignment locationjgi.p|Nanoce1779_2|511535:22290..22520 -
Alignment locationCDS_10680:22290..22520 -
Alignment locationjgi.p|Nanoce1779_2|534259:24789..26410 -
Alignment locationjgi.p|Nanoce1779_2|534259:24789..26410 -
Alignment locationCDS_10681:25923..26410 -
Alignment locationCDS_10681:24789..25770 -
Alignment locationjgi.p|Nanoce1779_2|534262:19446..20036 -
Alignment locationjgi.p|Nanoce1779_2|534262:19446..20036 -
Alignment locationCDS_10678:19446..20036 -
Alignment locationjgi.p|Nanoce1779_2|534267:17127..18977 -
Alignment locationjgi.p|Nanoce1779_2|534267:17127..18977 -
Alignment locationCDS_10677:18174..18977 -
Alignment locationCDS_10677:17127..18134 -
Alignment locationjgi.p|Nanoce1779_2|534288:64410..66086 +
Alignment locationjgi.p|Nanoce1779_2|534288:64410..66086 +
Alignment locationCDS_10695:64410..66086 +
Alignment locationjgi.p|Nanoce1779_2|534296:43046..44215 +
Alignment locationjgi.p|Nanoce1779_2|534296:43046..44215 +
Alignment locationCDS_10689:43046..43628 +
Alignment locationCDS_10689:43680..44215 +
Alignment locationjgi.p|Nanoce1779_2|561193:30488..35203 -
Alignment locationjgi.p|Nanoce1779_2|561193:30488..35203 -
Alignment locationCDS_10685:34706..35096 -
Alignment locationCDS_10685:34414..34636 -
Alignment locationCDS_10685:32631..34287 -
Alignment locationjgi.p|Nanoce1779_2|561202:39902..43160 -
Alignment locationjgi.p|Nanoce1779_2|561202:39902..43160 -
Alignment locationCDS_10688:40839..42548 -
Alignment locationjgi.p|Nanoce1779_2|613545:861..3306 +
Alignment locationjgi.p|Nanoce1779_2|613545:861..3306 +
Alignment locationCDS_10668:958..2823 +
Alignment locationjgi.p|Nanoce1779_2|613546:3790..4594 +
Alignment locationjgi.p|Nanoce1779_2|613546:3790..4594 +
Alignment locationCDS_10669:3829..3893 +
Alignment locationCDS_10669:3975..4494 +
Alignment locationjgi.p|Nanoce1779_2|613550:6910..7371 -
Alignment locationjgi.p|Nanoce1779_2|613550:6910..7371 -
Alignment locationCDS_10671:7106..7342 -
Alignment locationjgi.p|Nanoce1779_2|613551:7372..8873 -
Alignment locationjgi.p|Nanoce1779_2|613551:7372..8873 -
Alignment locationCDS_10672:7664..8867 -
Alignment locationjgi.p|Nanoce1779_2|613554:9438..10029 +
Alignment locationjgi.p|Nanoce1779_2|613554:9438..10029 +
Alignment locationCDS_10673:9443..9922 +
Alignment locationjgi.p|Nanoce1779_2|613557:11479..13710 -
Alignment locationjgi.p|Nanoce1779_2|613557:11479..13710 -
Alignment locationCDS_10674:12803..13681 -
Alignment locationCDS_10674:11740..12645 -
Alignment locationjgi.p|Nanoce1779_2|613559:14030..14527 +
Alignment locationjgi.p|Nanoce1779_2|613559:14030..14527 +
Alignment locationCDS_10675:14040..14297 +
Alignment locationjgi.p|Nanoce1779_2|613561:14030..16266 -
Alignment locationjgi.p|Nanoce1779_2|613561:14030..16266 -
Alignment locationCDS_10676:16054..16229 -
Alignment locationCDS_10676:15399..15950 -
Alignment locationCDS_10676:14505..15139 -
Alignment locationCDS_10676:14329..14396 -
Alignment locationjgi.p|Nanoce1779_2|613572:27107..28349 -
Alignment locationjgi.p|Nanoce1779_2|613572:27107..28349 -
Alignment locationCDS_10682:28208..28304 -
Alignment locationCDS_10682:27520..27771 -
Alignment locationCDS_10682:27228..27385 -
Alignment locationjgi.p|Nanoce1779_2|613575:28964..30366 +
Alignment locationjgi.p|Nanoce1779_2|613575:28964..30366 +
Alignment locationCDS_10683:29434..29616 +
Alignment locationCDS_10683:29730..29948 +
Alignment locationjgi.p|Nanoce1779_2|613578:30488..34568 +
Alignment locationjgi.p|Nanoce1779_2|613578:30488..34568 +
Alignment locationCDS_10684:30507..32402 +
Alignment locationjgi.p|Nanoce1779_2|613592:35294..38029 +
Alignment locationjgi.p|Nanoce1779_2|613592:35294..38029 +
Alignment locationCDS_10686:35352..35481 +
Alignment locationCDS_10686:35566..35658 +
Alignment locationCDS_10686:35904..36067 +
Alignment locationCDS_10686:36281..36391 +
Alignment locationCDS_10686:36522..36603 +
Alignment locationCDS_10686:36781..37208 +
Alignment locationjgi.p|Nanoce1779_2|613595:37939..39888 +
Alignment locationjgi.p|Nanoce1779_2|613595:37939..39888 +
Alignment locationCDS_10687:38005..39402 +
Alignment locationjgi.p|Nanoce1779_2|613600:44746..48502 +
Alignment locationjgi.p|Nanoce1779_2|613600:44746..48502 +
Alignment locationCDS_10690:44875..45015 +
Alignment locationCDS_10690:45342..48293 +
Alignment locationjgi.p|Nanoce1779_2|613603:49214..52388 +
Alignment locationjgi.p|Nanoce1779_2|613603:49214..52388 +
Alignment locationCDS_10691:49686..49722 +
Alignment locationCDS_10691:49916..51105 +
Alignment locationCDS_10691:51261..52079 +
Alignment locationjgi.p|Nanoce1779_2|613606:52389..54863 -
Alignment locationjgi.p|Nanoce1779_2|613606:52389..54863 -
Alignment locationCDS_10692:54788..54794 -
Alignment locationCDS_10692:54610..54687 -
Alignment locationCDS_10692:54466..54542 -
Alignment locationCDS_10692:53763..54209 -
Alignment locationCDS_10692:53527..53631 -
Alignment locationCDS_10692:52855..53352 -
Alignment locationjgi.p|Nanoce1779_2|613634:66438..67502 -
Alignment locationjgi.p|Nanoce1779_2|613634:66438..67502 -
Alignment locationCDS_10696:66565..67488 -
Alignment locationjgi.p|Nanoce1779_2|626444:19430..22247 -
Alignment locationjgi.p|Nanoce1779_2|626444:19430..22247 -
Alignment locationCDS_10679:21095..22247 -
Alignment locationCDS_10679:20129..20175 -
Alignment locationjgi.p|Nanoce1779_2|626452:54968..61551 +
Alignment locationjgi.p|Nanoce1779_2|626452:54968..61551 +
Alignment locationCDS_10694:57158..57359 +
Alignment locationCDS_10694:57711..58268 +
Alignment locationCDS_10694:58426..58665 +
Alignment locationCDS_10694:61499..61551 +
Alignment locationjgi.p|Nanoce1779_2|634393:54968..57814 +
Alignment locationjgi.p|Nanoce1779_2|634393:54968..57814 +
Alignment locationCDS_10693:55231..55349 +
Alignment locationCDS_10693:55377..55698 +
Alignment locationjgi.p|Nanoce1779_2|410335:4788..6904 -
Alignment locationjgi.p|Nanoce1779_2|511535:22290..22520 -
Alignment locationjgi.p|Nanoce1779_2|534259:24789..26410 -
Alignment locationjgi.p|Nanoce1779_2|534262:19446..20036 -
Alignment locationjgi.p|Nanoce1779_2|534267:17127..18977 -
Alignment locationjgi.p|Nanoce1779_2|534288:64410..66086 +
Alignment locationjgi.p|Nanoce1779_2|534296:43046..44215 +
Alignment locationjgi.p|Nanoce1779_2|561193:32631..35096 -
Alignment locationjgi.p|Nanoce1779_2|561202:40839..42548 -
Alignment locationjgi.p|Nanoce1779_2|613545:958..2823 +
Alignment locationjgi.p|Nanoce1779_2|613546:3829..4494 +
Alignment locationjgi.p|Nanoce1779_2|613550:7106..7342 -
Alignment locationjgi.p|Nanoce1779_2|613551:7664..8867 -
Alignment locationjgi.p|Nanoce1779_2|613554:9443..9922 +
Alignment locationjgi.p|Nanoce1779_2|613557:11740..13681 -
Alignment locationjgi.p|Nanoce1779_2|613559:14040..14297 +
Alignment locationjgi.p|Nanoce1779_2|613561:14329..16229 -
Alignment locationjgi.p|Nanoce1779_2|613572:27228..28304 -
Alignment locationjgi.p|Nanoce1779_2|613575:29434..29948 +
Alignment locationjgi.p|Nanoce1779_2|613578:30507..32402 +
Alignment locationjgi.p|Nanoce1779_2|613592:35352..37208 +
Alignment locationjgi.p|Nanoce1779_2|613595:38005..39402 +
Alignment locationjgi.p|Nanoce1779_2|613600:44875..48293 +
Alignment locationjgi.p|Nanoce1779_2|613603:49686..52079 +
Alignment locationjgi.p|Nanoce1779_2|613606:52855..54794 -
Alignment locationjgi.p|Nanoce1779_2|613634:66565..67488 -
Alignment locationjgi.p|Nanoce1779_2|626444:20129..22247 -
Alignment locationjgi.p|Nanoce1779_2|626452:57158..61551 +
Alignment locationjgi.p|Nanoce1779_2|634393:55231..55698 +
Alignment locationncniL098:862..67502 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
jgi.p|Nanoce1779_2|410335genejgi.p|Nanoce1779_2|410335:4617..7004 -
jgi.p|Nanoce1779_2|410335mRNAjgi.p|Nanoce1779_2|410335:4617..7004 -
CDS_10670CDSCDS_10670:6813..6904 -
CDS_10670CDSCDS_10670:6540..6579 -
CDS_10670CDSCDS_10670:4788..6395 -
jgi.p|Nanoce1779_2|511535genejgi.p|Nanoce1779_2|511535:22290..22520 -
jgi.p|Nanoce1779_2|511535mRNAjgi.p|Nanoce1779_2|511535:22290..22520 -
CDS_10680CDSCDS_10680:22290..22520 -
jgi.p|Nanoce1779_2|534259genejgi.p|Nanoce1779_2|534259:24789..26410 -
jgi.p|Nanoce1779_2|534259mRNAjgi.p|Nanoce1779_2|534259:24789..26410 -
CDS_10681CDSCDS_10681:25923..26410 -
CDS_10681CDSCDS_10681:24789..25770 -
jgi.p|Nanoce1779_2|534262genejgi.p|Nanoce1779_2|534262:19446..20036 -
jgi.p|Nanoce1779_2|534262mRNAjgi.p|Nanoce1779_2|534262:19446..20036 -
CDS_10678CDSCDS_10678:19446..20036 -
jgi.p|Nanoce1779_2|534267genejgi.p|Nanoce1779_2|534267:17127..18977 -
jgi.p|Nanoce1779_2|534267mRNAjgi.p|Nanoce1779_2|534267:17127..18977 -
CDS_10677CDSCDS_10677:18174..18977 -
CDS_10677CDSCDS_10677:17127..18134 -
jgi.p|Nanoce1779_2|534288genejgi.p|Nanoce1779_2|534288:64410..66086 +
jgi.p|Nanoce1779_2|534288mRNAjgi.p|Nanoce1779_2|534288:64410..66086 +
CDS_10695CDSCDS_10695:64410..66086 +
jgi.p|Nanoce1779_2|534296genejgi.p|Nanoce1779_2|534296:43046..44215 +
jgi.p|Nanoce1779_2|534296mRNAjgi.p|Nanoce1779_2|534296:43046..44215 +
CDS_10689CDSCDS_10689:43046..43628 +
CDS_10689CDSCDS_10689:43680..44215 +
jgi.p|Nanoce1779_2|561193genejgi.p|Nanoce1779_2|561193:30488..35203 -
jgi.p|Nanoce1779_2|561193mRNAjgi.p|Nanoce1779_2|561193:30488..35203 -
CDS_10685CDSCDS_10685:34706..35096 -
CDS_10685CDSCDS_10685:34414..34636 -
CDS_10685CDSCDS_10685:32631..34287 -
jgi.p|Nanoce1779_2|561202genejgi.p|Nanoce1779_2|561202:39902..43160 -
jgi.p|Nanoce1779_2|561202mRNAjgi.p|Nanoce1779_2|561202:39902..43160 -
CDS_10688CDSCDS_10688:40839..42548 -
jgi.p|Nanoce1779_2|613545genejgi.p|Nanoce1779_2|613545:861..3306 +
jgi.p|Nanoce1779_2|613545mRNAjgi.p|Nanoce1779_2|613545:861..3306 +
CDS_10668CDSCDS_10668:958..2823 +
jgi.p|Nanoce1779_2|613546genejgi.p|Nanoce1779_2|613546:3790..4594 +
jgi.p|Nanoce1779_2|613546mRNAjgi.p|Nanoce1779_2|613546:3790..4594 +
CDS_10669CDSCDS_10669:3829..3893 +
CDS_10669CDSCDS_10669:3975..4494 +
jgi.p|Nanoce1779_2|613550genejgi.p|Nanoce1779_2|613550:6910..7371 -
jgi.p|Nanoce1779_2|613550mRNAjgi.p|Nanoce1779_2|613550:6910..7371 -
CDS_10671CDSCDS_10671:7106..7342 -
jgi.p|Nanoce1779_2|613551genejgi.p|Nanoce1779_2|613551:7372..8873 -
jgi.p|Nanoce1779_2|613551mRNAjgi.p|Nanoce1779_2|613551:7372..8873 -
CDS_10672CDSCDS_10672:7664..8867 -
jgi.p|Nanoce1779_2|613554genejgi.p|Nanoce1779_2|613554:9438..10029 +
jgi.p|Nanoce1779_2|613554mRNAjgi.p|Nanoce1779_2|613554:9438..10029 +
CDS_10673CDSCDS_10673:9443..9922 +
jgi.p|Nanoce1779_2|613557genejgi.p|Nanoce1779_2|613557:11479..13710 -
jgi.p|Nanoce1779_2|613557mRNAjgi.p|Nanoce1779_2|613557:11479..13710 -
CDS_10674CDSCDS_10674:12803..13681 -
CDS_10674CDSCDS_10674:11740..12645 -
jgi.p|Nanoce1779_2|613559genejgi.p|Nanoce1779_2|613559:14030..14527 +
jgi.p|Nanoce1779_2|613559mRNAjgi.p|Nanoce1779_2|613559:14030..14527 +
CDS_10675CDSCDS_10675:14040..14297 +
jgi.p|Nanoce1779_2|613561genejgi.p|Nanoce1779_2|613561:14030..16266 -
jgi.p|Nanoce1779_2|613561mRNAjgi.p|Nanoce1779_2|613561:14030..16266 -
CDS_10676CDSCDS_10676:16054..16229 -
CDS_10676CDSCDS_10676:15399..15950 -
CDS_10676CDSCDS_10676:14505..15139 -
CDS_10676CDSCDS_10676:14329..14396 -
jgi.p|Nanoce1779_2|613572genejgi.p|Nanoce1779_2|613572:27107..28349 -
jgi.p|Nanoce1779_2|613572mRNAjgi.p|Nanoce1779_2|613572:27107..28349 -
CDS_10682CDSCDS_10682:28208..28304 -
CDS_10682CDSCDS_10682:27520..27771 -
CDS_10682CDSCDS_10682:27228..27385 -
jgi.p|Nanoce1779_2|613575genejgi.p|Nanoce1779_2|613575:28964..30366 +
jgi.p|Nanoce1779_2|613575mRNAjgi.p|Nanoce1779_2|613575:28964..30366 +
CDS_10683CDSCDS_10683:29434..29616 +
CDS_10683CDSCDS_10683:29730..29948 +
jgi.p|Nanoce1779_2|613578genejgi.p|Nanoce1779_2|613578:30488..34568 +
jgi.p|Nanoce1779_2|613578mRNAjgi.p|Nanoce1779_2|613578:30488..34568 +
CDS_10684CDSCDS_10684:30507..32402 +
jgi.p|Nanoce1779_2|613592genejgi.p|Nanoce1779_2|613592:35294..38029 +
jgi.p|Nanoce1779_2|613592mRNAjgi.p|Nanoce1779_2|613592:35294..38029 +
CDS_10686CDSCDS_10686:35352..35481 +
CDS_10686CDSCDS_10686:35566..35658 +
CDS_10686CDSCDS_10686:35904..36067 +
CDS_10686CDSCDS_10686:36281..36391 +
CDS_10686CDSCDS_10686:36522..36603 +
CDS_10686CDSCDS_10686:36781..37208 +
jgi.p|Nanoce1779_2|613595genejgi.p|Nanoce1779_2|613595:37939..39888 +
jgi.p|Nanoce1779_2|613595mRNAjgi.p|Nanoce1779_2|613595:37939..39888 +
CDS_10687CDSCDS_10687:38005..39402 +
jgi.p|Nanoce1779_2|613600genejgi.p|Nanoce1779_2|613600:44746..48502 +
jgi.p|Nanoce1779_2|613600mRNAjgi.p|Nanoce1779_2|613600:44746..48502 +
CDS_10690CDSCDS_10690:44875..45015 +
CDS_10690CDSCDS_10690:45342..48293 +
jgi.p|Nanoce1779_2|613603genejgi.p|Nanoce1779_2|613603:49214..52388 +
jgi.p|Nanoce1779_2|613603mRNAjgi.p|Nanoce1779_2|613603:49214..52388 +
CDS_10691CDSCDS_10691:49686..49722 +
CDS_10691CDSCDS_10691:49916..51105 +
CDS_10691CDSCDS_10691:51261..52079 +
jgi.p|Nanoce1779_2|613606genejgi.p|Nanoce1779_2|613606:52389..54863 -
jgi.p|Nanoce1779_2|613606mRNAjgi.p|Nanoce1779_2|613606:52389..54863 -
CDS_10692CDSCDS_10692:54788..54794 -
CDS_10692CDSCDS_10692:54610..54687 -
CDS_10692CDSCDS_10692:54466..54542 -
CDS_10692CDSCDS_10692:53763..54209 -
CDS_10692CDSCDS_10692:53527..53631 -
CDS_10692CDSCDS_10692:52855..53352 -
jgi.p|Nanoce1779_2|613634genejgi.p|Nanoce1779_2|613634:66438..67502 -
jgi.p|Nanoce1779_2|613634mRNAjgi.p|Nanoce1779_2|613634:66438..67502 -
CDS_10696CDSCDS_10696:66565..67488 -
jgi.p|Nanoce1779_2|626444genejgi.p|Nanoce1779_2|626444:19430..22247 -
jgi.p|Nanoce1779_2|626444mRNAjgi.p|Nanoce1779_2|626444:19430..22247 -
CDS_10679CDSCDS_10679:21095..22247 -
CDS_10679CDSCDS_10679:20129..20175 -
jgi.p|Nanoce1779_2|626452genejgi.p|Nanoce1779_2|626452:54968..61551 +
jgi.p|Nanoce1779_2|626452mRNAjgi.p|Nanoce1779_2|626452:54968..61551 +
CDS_10694CDSCDS_10694:57158..57359 +
CDS_10694CDSCDS_10694:57711..58268 +
CDS_10694CDSCDS_10694:58426..58665 +
CDS_10694CDSCDS_10694:61499..61551 +
jgi.p|Nanoce1779_2|634393genejgi.p|Nanoce1779_2|634393:54968..57814 +
jgi.p|Nanoce1779_2|634393mRNAjgi.p|Nanoce1779_2|634393:54968..57814 +
CDS_10693CDSCDS_10693:55231..55349 +
CDS_10693CDSCDS_10693:55377..55698 +
jgi.p|Nanoce1779_2|410335polypeptidejgi.p|Nanoce1779_2|410335:4788..6904 -
jgi.p|Nanoce1779_2|511535polypeptidejgi.p|Nanoce1779_2|511535:22290..22520 -
jgi.p|Nanoce1779_2|534259polypeptidejgi.p|Nanoce1779_2|534259:24789..26410 -
jgi.p|Nanoce1779_2|534262polypeptidejgi.p|Nanoce1779_2|534262:19446..20036 -
jgi.p|Nanoce1779_2|534267polypeptidejgi.p|Nanoce1779_2|534267:17127..18977 -
jgi.p|Nanoce1779_2|534288polypeptidejgi.p|Nanoce1779_2|534288:64410..66086 +
jgi.p|Nanoce1779_2|534296polypeptidejgi.p|Nanoce1779_2|534296:43046..44215 +
jgi.p|Nanoce1779_2|561193polypeptidejgi.p|Nanoce1779_2|561193:32631..35096 -
jgi.p|Nanoce1779_2|561202polypeptidejgi.p|Nanoce1779_2|561202:40839..42548 -
jgi.p|Nanoce1779_2|613545polypeptidejgi.p|Nanoce1779_2|613545:958..2823 +
jgi.p|Nanoce1779_2|613546polypeptidejgi.p|Nanoce1779_2|613546:3829..4494 +
jgi.p|Nanoce1779_2|613550polypeptidejgi.p|Nanoce1779_2|613550:7106..7342 -
jgi.p|Nanoce1779_2|613551polypeptidejgi.p|Nanoce1779_2|613551:7664..8867 -
jgi.p|Nanoce1779_2|613554polypeptidejgi.p|Nanoce1779_2|613554:9443..9922 +
jgi.p|Nanoce1779_2|613557polypeptidejgi.p|Nanoce1779_2|613557:11740..13681 -
jgi.p|Nanoce1779_2|613559polypeptidejgi.p|Nanoce1779_2|613559:14040..14297 +
jgi.p|Nanoce1779_2|613561polypeptidejgi.p|Nanoce1779_2|613561:14329..16229 -
jgi.p|Nanoce1779_2|613572polypeptidejgi.p|Nanoce1779_2|613572:27228..28304 -
jgi.p|Nanoce1779_2|613575polypeptidejgi.p|Nanoce1779_2|613575:29434..29948 +
jgi.p|Nanoce1779_2|613578polypeptidejgi.p|Nanoce1779_2|613578:30507..32402 +
jgi.p|Nanoce1779_2|613592polypeptidejgi.p|Nanoce1779_2|613592:35352..37208 +
jgi.p|Nanoce1779_2|613595polypeptidejgi.p|Nanoce1779_2|613595:38005..39402 +
jgi.p|Nanoce1779_2|613600polypeptidejgi.p|Nanoce1779_2|613600:44875..48293 +
jgi.p|Nanoce1779_2|613603polypeptidejgi.p|Nanoce1779_2|613603:49686..52079 +
jgi.p|Nanoce1779_2|613606polypeptidejgi.p|Nanoce1779_2|613606:52855..54794 -
jgi.p|Nanoce1779_2|613634polypeptidejgi.p|Nanoce1779_2|613634:66565..67488 -
jgi.p|Nanoce1779_2|626444polypeptidejgi.p|Nanoce1779_2|626444:20129..22247 -
jgi.p|Nanoce1779_2|626452polypeptidejgi.p|Nanoce1779_2|626452:57158..61551 +
jgi.p|Nanoce1779_2|634393polypeptidejgi.p|Nanoce1779_2|634393:55231..55698 +
ncniL098syntenic_regionncniL098:862..67502 +
Analyses
This supercontig is derived from or has results from the following analyses
Analysis NameDate Performed
Gennome assembly for N. oceanica CCMP17792018-02-01
Annotated Terms
Homology
Relationships
Sequences
Synonyms
Publications