jgi.p|Nanoce1779_2|613551, mRNA_10672 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613551
Unique NamemRNA_10672
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1502
Alignment locationscaffold_76:7372..8873 -

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Properties
Property NameValue
TranscriptId613637
TrackFilteredModels2
ProteinId613551
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:7372..8873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613551gene_10672Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613551mRNA_10672-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10672CDS_10672Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10672 ID=mRNA_10672|Name=jgi.p|Nanoce1779_2|613551|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp
GCGGGCATGATAGCGGCGTCGAGCGACATACAACAGCAGCAGCAGTATTT
TGAGGGCTCATTCCCCCCCCCTACTCCTTCTTCCGTCTCTCCAACTCGCC
GGGCGTCTCTCGGTTCTTTATCCTCATCCAGCTGCCACCTTCCTCCTCCT
CCTGAAGGACAGCGGCTGGCCTTCCCCTTCCCTTCCCCACCGCACCCAGC
ACCACTAGCACAACCACCGGCATTAGAAGCCGCTGAGGCCGCTGCTGATC
CTGCTGCCGCAGGAGAAGCAGATGAGTGGGAACGGATTGGAGCCGATTTC
CAAGCAGTCCTTCCCGACCTGATCGTAGGAAGGAAGGAGGGGCCGGAAGA
AGAGGGAGAAAAAGCAGGTGAAGAGGAGGAAGGACAGGAGGACAAGGAGA
GACCTACGACAATTAGTAGCTTGGGGGATAGGACTACCACCTGCAGTGGA
GAGAATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCCGGGTAGCAG
GCGTCGGAAACGACAGGAGGACCGGCGGGCAACTCTTGTTTGGTCCCCAT
CGTGGGGAAAAGGTGATTTAGAACGTGTGGTGGCCTTGACGGGGGGGGGA
AGAGCGGCGGCGTTGCAGGAATGGACGCCGGCCGAGATGGTCGCGTTTGA
GGAAGGGGTGCGAGCTTACCGTCGTTGTTTTGCGACAATTCATCAAAAAA
GGTTGCCCAGCAAAAGTGTGAAAGCGATTGTGGCAAGATTTTATGATGAA
TTTAAGCGCTCTGAGGGGTATAGGGCGTGGAAGGAGGATAAGCTGATCGG
GCGTCGGCTGCTGCTGAGGCAAAAGCGGCCGCGGTGGAAGGGCGGGGGCT
GGGAGGAAGTGAAAGGGACCATTCGAGGGAGTGCGAGAGATGAGGACGGA
GATGAATTACTGGACTTGGATTATGACGATGGACGGATGGGGCAATTGTA
TCGATACGAAGCCGAGCCGCTTTTGTTGGGGCCCGGGGACGAGGAGGAAG
GGAGGAAGGAAGGGCGGGAGGAAGAATTGAAGCAGGAGCCCTTGTCGTGG
ACGTCGCAGGAAGAGGCGTCGTTGGTTAGTCCACTATCTGTGGTGGATGA
AGGCACGGACATTCGTGCCGGCGGGGAAAACGAAGTAGAGGCCAGGGAGG
CGAGGAAAGGAGAAGAAGGGGGAGGAAGAGAAAGGGAGGCACAAGAAAGG
CAAGTGGTGACGTGAATTTGATTGATCTCGCAAAATTATCGAAACGAGTG
TTTGTCTTCGAATTCTCCAGCTGATAAGCTTGTACAATTCTTCGAAATGT
ATGCTTGATTTTGAATTCGTATTTTCTTGTGGAAATAAAAAGCCATAGAA
GATAATGAAGCGGGGTTTTCACACTTGACACATGTACGATGCGCACATCA
ATCAACAGTATTGTAGTGAGAATGATAACGTCGAAAGCACTGCACGCGAA
GACAAAGATAGATAACGCATTAACAACGAAGAACGGTAGAGCCAAGGTGC
TT
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protein sequence of jgi.p|Nanoce1779_2|613551

>mRNA_10672-protein ID=mRNA_10672-protein|Name=jgi.p|Nanoce1779_2|613551|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MIAASSDIQQQQQYFEGSFPPPTPSSVSPTRRASLGSLSSSSCHLPPPPE
GQRLAFPFPSPPHPAPLAQPPALEAAEAAADPAAAGEADEWERIGADFQA
VLPDLIVGRKEGPEEEGEKAGEEEEGQEDKERPTTISSLGDRTTTCSGEN
HHHHHQQQQQQPGSRRRKRQEDRRATLVWSPSWGKGDLERVVALTGGGRA
AALQEWTPAEMVAFEEGVRAYRRCFATIHQKRLPSKSVKAIVARFYDEFK
RSEGYRAWKEDKLIGRRLLLRQKRPRWKGGGWEEVKGTIRGSARDEDGDE
LLDLDYDDGRMGQLYRYEAEPLLLGPGDEEEGRKEGREEELKQEPLSWTS
QEEASLVSPLSVVDEGTDIRAGGENEVEAREARKGEEGGGREREAQERQV
V
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mRNA from alignment at scaffold_76:7372..8873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10672 ID=mRNA_10672|Name=jgi.p|Nanoce1779_2|613551|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp|location=Sequence derived from alignment at scaffold_76:7372..8873- (Nannochloropsis oceanica)
GCGGGCATGATAGCGGCGTCGAGCGACATACAACAGCAGCAGCAGTATTT
TGAGGGCTCATTCCCCCCCCCTACTCCTTCTTCCGTCTCTCCAACTCGCC
GGGCGTCTCTCGGTTCTTTATCCTCATCCAGCTGCCACCTTCCTCCTCCT
CCTGAAGGACAGCGGCTGGCCTTCCCCTTCCCTTCCCCACCGCACCCAGC
ACCACTAGCACAACCACCGGCATTAGAAGCCGCTGAGGCCGCTGCTGATC
CTGCTGCCGCAGGAGAAGCAGATGAGTGGGAACGGATTGGAGCCGATTTC
CAAGCAGTCCTTCCCGACCTGATCGTAGGAAGGAAGGAGGGGCCGGAAGA
AGAGGGAGAAAAAGCAGGTGAAGAGGAGGAAGGACAGGAGGACAAGGAGA
GACCTACGACAATTAGTAGCTTGGGGGATAGGACTACCACCTGCAGTGGA
GAGAATCATCATCATCATCATCAGCAGCAGCAGCAGCAGCCGGGTAGCAG
GCGTCGGAAACGACAGGAGGACCGGCGGGCAACTCTTGTTTGGTCCCCAT
CGTGGGGAAAAGGTGATTTAGAACGTGTGGTGGCCTTGACGGGGGGGGGA
AGAGCGGCGGCGTTGCAGGAATGGACGCCGGCCGAGATGGTCGCGTTTGA
GGAAGGGGTGCGAGCTTACCGTCGTTGTTTTGCGACAATTCATCAAAAAA
GGTTGCCCAGCAAAAGTGTGAAAGCGATTGTGGCAAGATTTTATGATGAA
TTTAAGCGCTCTGAGGGGTATAGGGCGTGGAAGGAGGATAAGCTGATCGG
GCGTCGGCTGCTGCTGAGGCAAAAGCGGCCGCGGTGGAAGGGCGGGGGCT
GGGAGGAAGTGAAAGGGACCATTCGAGGGAGTGCGAGAGATGAGGACGGA
GATGAATTACTGGACTTGGATTATGACGATGGACGGATGGGGCAATTGTA
TCGATACGAAGCCGAGCCGCTTTTGTTGGGGCCCGGGGACGAGGAGGAAG
GGAGGAAGGAAGGGCGGGAGGAAGAATTGAAGCAGGAGCCCTTGTCGTGG
ACGTCGCAGGAAGAGGCGTCGTTGGTTAGTCCACTATCTGTGGTGGATGA
AGGCACGGACATTCGTGCCGGCGGGGAAAACGAAGTAGAGGCCAGGGAGG
CGAGGAAAGGAGAAGAAGGGGGAGGAAGAGAAAGGGAGGCACAAGAAAGG
CAAGTGGTGACGTGAATTTGATTGATCTCGCAAAATTATCGAAACGAGTG
TTTGTCTTCGAATTCTCCAGCTGATAAGCTTGTACAATTCTTCGAAATGT
ATGCTTGATTTTGAATTCGTATTTTCTTGTGGAAATAAAAAGCCATAGAA
GATAATGAAGCGGGGTTTTCACACTTGACACATGTACGATGCGCACATCA
ATCAACAGTATTGTAGTGAGAATGATAACGTCGAAAGCACTGCACGCGAA
GACAAAGATAGATAACGCATTAACAACGAAGAACGGTAGAGCCAAGGTGC
TT
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Coding sequence (CDS) from alignment at scaffold_76:7372..8873-

>mRNA_10672 ID=mRNA_10672|Name=jgi.p|Nanoce1779_2|613551|organism=Nannochloropsis oceanica|type=CDS|length=1204bp|location=Sequence derived from alignment at scaffold_76:7372..8873- (Nannochloropsis oceanica)
ATGATAGCGGCGTCGAGCGACATACAACAGCAGCAGCAGTATTTTGAGGG
CTCATTCCCCCCCCCTACTCCTTCTTCCGTCTCTCCAACTCGCCGGGCGT
CTCTCGGTTCTTTATCCTCATCCAGCTGCCACCTTCCTCCTCCTCCTGAA
GGACAGCGGCTGGCCTTCCCCTTCCCTTCCCCACCGCACCCAGCACCACT
AGCACAACCACCGGCATTAGAAGCCGCTGAGGCCGCTGCTGATCCTGCTG
CCGCAGGAGAAGCAGATGAGTGGGAACGGATTGGAGCCGATTTCCAAGCA
GTCCTTCCCGACCTGATCGTAGGAAGGAAGGAGGGGCCGGAAGAAGAGGG
AGAAAAAGCAGGTGAAGAGGAGGAAGGACAGGAGGACAAGGAGAGACCTA
CGACAATTAGTAGCTTGGGGGATAGGACTACCACCTGCAGTGGAGAGAAT
CATCATCATCATCATCAGCAGCAGCAGCAGCAGCCGGGTAGCAGGCGTCG
GAAACGACAGGAGGACCGGCGGGCAACTCTTGTTTGGTCCCCATCGTGGG
GAAAAGGTGATTTAGAACGTGTGGTGGCCTTGACGGGGGGGGGAAGAGCG
GCGGCGTTGCAGGAATGGACGCCGGCCGAGATGGTCGCGTTTGAGGAAGG
GGTGCGAGCTTACCGTCGTTGTTTTGCGACAATTCATCAAAAAAGGTTGC
CCAGCAAAAGTGTGAAAGCGATTGTGGCAAGATTTTATGATGAATTTAAG
CGCTCTGAGGGGTATAGGGCGTGGAAGGAGGATAAGCTGATCGGGCGTCG
GCTGCTGCTGAGGCAAAAGCGGCCGCGGTGGAAGGGCGGGGGCTGGGAGG
AAGTGAAAGGGACCATTCGAGGGAGTGCGAGAGATGAGGACGGAGATGAA
TTACTGGACTTGGATTATGACGATGGACGGATGGGGCAATTGTATCGATA
CGAAGCCGAGCCGCTTTTGTTGGGGCCCGGGGACGAGGAGGAAGGGAGGA
AGGAAGGGCGGGAGGAAGAATTGAAGCAGGAGCCCTTGTCGTGGACGTCG
CAGGAAGAGGCGTCGTTGGTTAGTCCACTATCTGTGGTGGATGAAGGCAC
GGACATTCGTGCCGGCGGGGAAAACGAAGTAGAGGCCAGGGAGGCGAGGA
AAGGAGAAGAAGGGGGAGGAAGAGAAAGGGAGGCACAAGAAAGGCAAGTG
GTGA
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Synonyms
Publications