|
BLAST analysis for N. gaditana B-31 |
blastp |
NagaB31-proteins |
|
BLASTP analysis of N. oceanica IMET1 genes |
diamond |
IMET1v2.protein-noStar.fa |
|
Gene prediction for Monodopsis sp. C141 |
unpublished |
Monodopsis_C141_genome_v1_annotation_filtered.gff |
|
Gene prediction for Monodopsis sp. C73 |
unpublished |
Monodopsis_C73_genome_v1_annotation_filtered.gff |
|
Gene prediction for N. gaditana B-31 |
GCA_000569095.1_NagaB31_1.0 |
GCA_000569095.1_NagaB31_1.0 |
|
Gene prediction for N. oceanica CCMP1779 |
JGI Annotation Pipeline |
Nanoce1779_2 |
|
Gene prediction for N. oceanica IMET1 |
BRAKER1, PASA2 |
de novo, RNA-seq |
|
Gene prediction for N. salina CCMP1776 (version 2) |
augustus |
augustus |
|
Gene prediction for Vischeria sp. C74 |
unpublished |
Vischeria_C74_genome_v1_annotation_filtered.gff |
|
Gennome assembly for Monodopsis sp. C141 |
unpublished |
Monodopsis_C141_genome_v1.fa |
|
Gennome assembly for Monodopsis sp. C73 |
unpublished |
Monodopsis_C73_genome_v1.fa |
|
Gennome assembly for N. gaditana B-31 |
Newbler & SCAMPI |
454; SOLiD; ~17X |
|
Gennome assembly for N. gaditana CCMP1894 |
HGAP |
PacBio, ~288.0X |
|
Gennome assembly for N. gaditana CCMP526 |
Newbler & Velvet |
454 GS FLX Titanium; Illumina GA IIx; ~230X |
|
Gennome assembly for N. gaditana CCMP527 |
Velvet |
Illumina GA IIx, ~30X |
|
Gennome assembly for N. granulata CCMP529 |
Newbler |
Illumina GAIIx, ~72.0X, ASM433540v1 |
|
Gennome assembly for N. limnetica CCMP505 |
Velvet |
Illumina GA IIx, ~30X, ASM161422v1 |
|
Gennome assembly for N. oceanica BR2 |
pomoxis, Canu, Flye |
GCA_009014725.1_ASM901472v1 |
|
Gennome assembly for N. oceanica CCMP1779 |
Falcon |
PacBio, ~108.51X |
|
Gennome assembly for N. oceanica CCMP531 |
Newbler |
Illumina GAIIx, ~70X |