Analysis

Name Program Source
InterPro analysis for N. oceanica IMET1 genes InterProScan IMET1v2.protein-noStar.fa
NoIMET1_WT_HS nfcore/rnaseq RNA-seq, WT_HS
PRJNA157867 nf-core/rnaseq RNA-seq, N+/N-, PRJNA157867
PRJNA174770 nf-core/rnaseq RNA-seq, nitrogen depletion, PRJNA174770
PRJNA182180 nf-core/rnaseq RNA-seq, N-deprivation, PRJNA182180
PRJNA241382 nf-core/rnaseq RNA-seq, HC vs VLC, PRJNA241382
PRJNA285666 nf-core/rnaseq RNA-seq, Light:dark cycle, PRJNA285666
PRJNA933693 nf-core/rnaseq RNA-seq, Nitrogen-repletion
PRJNA943449 nf-core/rnaseq RNA-seq, mPSo/Lao/LAmPSo
PXD008499 MaxQuant, Perseus LC-MS/MS, fresh/atomized, PXD008499
PXD008721 MaxQuant, Perseus LC-MS/MS, single-cell heterogeneity, PXD008721
PXD010030 MaxQuant, Perseus LC-MS/MS, C+/C-, PXD010030
PXD016054 MaxQuant LC-MS/MS, Red/Blue/White, PXD016054
PXD016699 MaxQuant LC-MS/MS, N+/N-, PXD016699
RNA_seq analysis for N. salina CCMP1776 v2 under N starvation Tuxedo RNA-seq, N-starvation, averaged by 3 replicates
RNA-seq profiling for N. salina CCMP1776 under high salt and nitrogen limitation Tuxedo workflow RNA-seq, high salt and nitrogen limitation
SRP229557 nfcore/rnaseq RNA-seq, nitrogen and phosphorus deprivation, SRP229557