jgi.p|Nanoce1779_2|534262, mRNA_10678 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|534262
Unique NamemRNA_10678
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length591
Alignment locationscaffold_76:19446..20036 -

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Properties
Property NameValue
TranscriptId534348
TrackFilteredModels2
ProteinId534262
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:19446..20036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534262gene_10678Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10678CDS_10678Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534262mRNA_10678-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10678 ID=mRNA_10678|Name=jgi.p|Nanoce1779_2|534262|organism=Nannochloropsis oceanica|type=mRNA|length=591bp
ATGGCCTGCTTGCACGATCTAAATGCTCTACATGCCTTGTCTGCAGCCCC
TGCCTCCGCCTCTGCTCCTGCCATGCCCCTGACTGTTGTGTTGGTCAACA
ATGGAGGGGGGGGGATCTTCTCCTTCCTCCCCATCGCGCGACATGCCGAC
GTCTTTTCTCCCTTCTTCGATTCGCCACACGACCTCCAATTCGGTCCTGT
CACCCAAGCATTCAACCTCCCCTATCAACACTGCAAATCCGCTGGAGACT
TGACCACCGCCCTCGCCCTAGCCCAGGCTAGCGGCCGTGCCTCCCTCATT
GAAGTCCTAACCGACCGGGCGCAAAACGTACGCATCCATCGACAGCTAGG
GGCAGGCATTCGTTCCTCCCTCCACGCGGGCTTAACGCAGCTCCTCCGAT
TAGATTGGATCCGCGCAGGTCCCCGCGCCAAGCCCTCCCTCTTGCTTTTG
CATGGCTTTTTGGGGTGTAAGGAGGACTGGGCGCCTTTGCTGTGGACAGG
CGGAGGGGTCGGTGCGAATAGCAGCACCGGTGGCAGTAGTAATAGCAGTG
GCGGTGGTGGGATGGGTATGAGTGGCAGTGGGAGTGGTGGG
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protein sequence of jgi.p|Nanoce1779_2|534262

>mRNA_10678-protein ID=mRNA_10678-protein|Name=jgi.p|Nanoce1779_2|534262|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MACLHDLNALHALSAAPASASAPAMPLTVVLVNNGGGGIFSFLPIARHAD
VFSPFFDSPHDLQFGPVTQAFNLPYQHCKSAGDLTTALALAQASGRASLI
EVLTDRAQNVRIHRQLGAGIRSSLHAGLTQLLRLDWIRAGPRAKPSLLLL
HGFLGCKEDWAPLLWTGGGVGANSSTGGSSNSSGGGGMGMSGSGSGG
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mRNA from alignment at scaffold_76:19446..20036-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10678 ID=mRNA_10678|Name=jgi.p|Nanoce1779_2|534262|organism=Nannochloropsis oceanica|type=mRNA|length=591bp|location=Sequence derived from alignment at scaffold_76:19446..20036- (Nannochloropsis oceanica)
ATGGCCTGCTTGCACGATCTAAATGCTCTACATGCCTTGTCTGCAGCCCC
TGCCTCCGCCTCTGCTCCTGCCATGCCCCTGACTGTTGTGTTGGTCAACA
ATGGAGGGGGGGGGATCTTCTCCTTCCTCCCCATCGCGCGACATGCCGAC
GTCTTTTCTCCCTTCTTCGATTCGCCACACGACCTCCAATTCGGTCCTGT
CACCCAAGCATTCAACCTCCCCTATCAACACTGCAAATCCGCTGGAGACT
TGACCACCGCCCTCGCCCTAGCCCAGGCTAGCGGCCGTGCCTCCCTCATT
GAAGTCCTAACCGACCGGGCGCAAAACGTACGCATCCATCGACAGCTAGG
GGCAGGCATTCGTTCCTCCCTCCACGCGGGCTTAACGCAGCTCCTCCGAT
TAGATTGGATCCGCGCAGGTCCCCGCGCCAAGCCCTCCCTCTTGCTTTTG
CATGGCTTTTTGGGGTGTAAGGAGGACTGGGCGCCTTTGCTGTGGACAGG
CGGAGGGGTCGGTGCGAATAGCAGCACCGGTGGCAGTAGTAATAGCAGTG
GCGGTGGTGGGATGGGTATGAGTGGCAGTGGGAGTGGTGGG
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Coding sequence (CDS) from alignment at scaffold_76:19446..20036-

>mRNA_10678 ID=mRNA_10678|Name=jgi.p|Nanoce1779_2|534262|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at scaffold_76:19446..20036- (Nannochloropsis oceanica)
ATGGCCTGCTTGCACGATCTAAATGCTCTACATGCCTTGTCTGCAGCCCC
TGCCTCCGCCTCTGCTCCTGCCATGCCCCTGACTGTTGTGTTGGTCAACA
ATGGAGGGGGGGGGATCTTCTCCTTCCTCCCCATCGCGCGACATGCCGAC
GTCTTTTCTCCCTTCTTCGATTCGCCACACGACCTCCAATTCGGTCCTGT
CACCCAAGCATTCAACCTCCCCTATCAACACTGCAAATCCGCTGGAGACT
TGACCACCGCCCTCGCCCTAGCCCAGGCTAGCGGCCGTGCCTCCCTCATT
GAAGTCCTAACCGACCGGGCGCAAAACGTACGCATCCATCGACAGCTAGG
GGCAGGCATTCGTTCCTCCCTCCACGCGGGCTTAACGCAGCTCCTCCGAT
TAGATTGGATCCGCGCAGGTCCCCGCGCCAAGCCCTCCCTCTTGCTTTTG
CATGGCTTTTTGGGGTGTAAGGAGGACTGGGCGCCTTTGCTGTGGACAGG
CGGAGGGGTCGGTGCGAATAGCAGCACCGGTGGCAGTAGTAATAGCAGTG
GCGGTGGTGGGATGGGTATGAGTGGCAGTGGGAGTGGTGGG
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Synonyms
Publications