jgi.p|Nanoce1779_2|634393, mRNA_10693 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|634393
Unique Name	mRNA_10693
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2227
Alignment location	scaffold_76:54968..57814 +

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Properties


Property Name	Value
TranscriptId	634479
Track	FilteredModels2
ProteinId	634393

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_76	supercontig	scaffold_76:54968..57814 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634393	gene_10693	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634393	mRNA_10693-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10693	CDS_10693	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_76:54968..57814+
coding sequence from alignment at scaffold_76:54968..57814+

mRNA sequence

>mRNA_10693 ID=mRNA_10693|Name=jgi.p|Nanoce1779_2|634393|organism=Nannochloropsis oceanica|type=mRNA|length=2227bp
CGTGATAAGGAAGCCTCGCTATCTATCGTGTGTCCGACGTTCTTTTTTTC
TCTCCACCATGCTGCCATACGCTAGATTGAGAATACATAGTCCCTTGCTG
ACGCCTTTCCCCACATCGTATCCCAAAGTGCCGGGCGTGTGCCTCGGGCA
GAGCTAGTCGAAACGCGCCACAAGAATCATCGCCGCCCCACTTCAACACT
GCTTGTGACGTCTGACCCCTCGCGTTCACTTCGTCATGAAGGTGCGCCGT
CTATCCCCTCGTCATGAGCTGTACTGCCGCTGCATCAATGCCTCCCCTGC
CTGCCAACCTTGTGCTGGGTGCTACAGGCATGCTGGGGCCGGCTATCCAC
CAAGCCTTGCGGATGTCACGTGTAAGCCAAGCGACGCAAGGAGGTTTGGT
CCCCTGCGATGTAACGAATGAGACGAGCCTGCGTGCATTCCTAGCGTCTC
AAGCCCCACAAGCTGTCATCAATTGTGTGGCGAAACGATGGCCGGACGTG
GTGGGGAAAGAGCCGGCGAAAGCTCAGGTACTTCATATTCGCTTAGTTAA
AATTTTGGCGGAAGAAAGTGCCCGCCTACGTTTTTGTCAGGTGCATACGT
TCACATATTACGCGTTTGATAGCACGAAGCCACAGTTCAAATCCTACGAT
CCGCCGCACCCGCTCAATGTCTATAAAGAGCACAAGCTGCGGAGAAGGTG
TTGAGACAGGGGCATGGGGGGTGCAGAGGGATAAGGCCAAAATTGGCAGG
ATAAAAATGGGCTGCGCGCTATGCGACCCACACTGAAGACGTCGCTCGCG
TGCTTGCTGTCATGGTCGGCAAGTCCCTGCAGCAGCAGCACCACCACCAC
CACCACCATTACCAGCACCAACAGCAGCAGTAAAAGATGGAAGGAGTGCT
GTAGGTTATTTTTCACTTAAGTAGTAACGAGAAATGAAGCGAAAGAGAGG
CGTATGAGAAGGGAGGGAAGGCATACACGAACTATAGCATGAGTTTACTA
ATTGGAGATTTTGGAGCAGTCGACGAAGCCCTTGGAGGCAGACCTTGACC
CGCCACAAGGAGGGCGCCACGACCCGAAGATTGCGAGTTGGGCATCACCT
CGTTACGAGCCGCATTGGGCGAGAATGTGGGAAAGCCTAGACCACTGCGC
GAGAGATTGACAGAAGTGCTCCAAAAGATCTTGGTTGGCTGACCGCATCA
CTATATTCCTCGCCTTCTTCCTCCTCCACCACCACAACTACCATTACCAC
CACCATCACCACCGTGTCACTGTGTCTTTTCGGAGCCGCTTTGTTACCCT
TCATTTTGCTCGCACTTTTCTCATCGTTTGTGCGATGGGGACTGAGTTGG
AGTAACGGGCGAGTTTCATTCGATTTGGAGATAGAAACAGATCGAGACAG
AGAGAGATTGCGTCCATATAAGGGGGAAAAGAAGAGCAAAGACAAGGCGA
AGACGAGCAACCGCAGATTCAACGTAACAATTTGCCTGCCCCATCCTCAG
GCCCAAGCCACAGTTGCTGTTTAGGCGTTCAAACTCTTCCTCCCTCCTTT
CACCCCCTCCTCTTACAGCAATGCCATCCTCCTCCGCCAGCGCCCGCCTC
CGCCGCCTCCTCTCCTCCTCCCTCTCTACCCCCTATCCACGAAGCCTGGC
CATGCCCGGTGCGTTCAATGGTCTCGTTGCACGTGCAGTCGCACATGCAG
GCTTTGAAGCTACCTATGTGTCAGGCGCGGGCGTTGCTGCAGGAATGGGG
TTGCCTGACATTGGACTGGCAGGTAAGCAGAATGAGAGGTTGAAAGGCTT
TGTGGGCGCAGACTCTGCCTTAGCTCCTTTCTTTCCCTCTTGATTTTAGT
TCCTTCCATTTCTCTTTTATACTCTCTTGCAGCTCCCTGCTTCTCAGACG
CCCAATCCCTTCTTCGCTCCCTTCCTCCCTAGGCCTAGGAGTTTTTGTTC
GCATAACCAAAGACATGTTATCTTGCTCCAGACTCCCCCCCACCCCATCG
ACCTTCTCTCTCTCTCTGTCCCTCCCTCCTCTTCTTTCCCTTCCTACATT
GTTCACCTTCGGCAAATTTGCAACCCCTCATTTTCATCTTTCCCTCCCTC
ACTCCCTCCCTCTTTCTCCCAAGGCATCGAGGATTTCACACGCGTCGTTC
GCGACGTGTCCACCTGCTCCGGTCTCCCCTTAATCGCCGACGCCGATACC
GGAGGAGAGGGCGGGAGGGAGGGCGTG

protein sequence of jgi.p|Nanoce1779_2|634393

>mRNA_10693-protein ID=mRNA_10693-protein|Name=jgi.p|Nanoce1779_2|634393|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MSCTAAASMPPLPANLVLGATGMLGPAIHQALRMSRVSQATQGGLVPCDV
TNETSLRAFLASQAPQAVINCVAKRWPDVVGKEPAKAQVLHIRLVKILAE
ESARLRFCQVHTFTYYAFDSTKPQFKSYDPPHPLNVYKEHKLRRRC*

mRNA from alignment at scaffold_76:54968..57814+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10693 ID=mRNA_10693|Name=jgi.p|Nanoce1779_2|634393|organism=Nannochloropsis oceanica|type=mRNA|length=2847bp|location=Sequence derived from alignment at scaffold_76:54968..57814+ (Nannochloropsis oceanica)
CGTGATAAGGAAGCCTCGCTATCTATCGTGTGTCCGACGTTCTTTTTTTC
TCTCCACCATGCTGCCATACGCTAGATTGAGAATACATAGTCCCTTGCTG
ACGCCTTTCCCCACATCGTATCCCAAAGTGCCGGGCGTGTGCCTCGGGCA
GAGCTAGTCGAAACGCGCCACAAGAATCATCGCCGCCCCACTTCAACACT
GCTTGTGACGTCTGACCCCTCGCGTTCACTTCGTCATGAAGGTGCGCCGT
CTATCCCCTCGTCATGAGCTGTACTGCCGCTGCATCAATGCCTCCCCTGC
CTGCCAACCTTGTGCTGGGTGCTACAGGCATGCTGGGGCCGGCTATCCAC
CAAGCCTTGCGGATGTCACGTGTAAGCCAAGCGTAAGTGGTCCGCTCTGC
GCATTCCAGGACGCAAGGAGGTTTGGTCCCCTGCGATGTAACGAATGAGA
CGAGCCTGCGTGCATTCCTAGCGTCTCAAGCCCCACAAGCTGTCATCAAT
TGTGTGGCGAAACGATGGCCGGACGTGGTGGGGAAAGAGCCGGCGAAAGC
TCAGGTACTTCATATTCGCTTAGTTAAAATTTTGGCGGAAGAAAGTGCCC
GCCTACGTTTTTGTCAGGTGCATACGTTCACATATTACGCGTTTGATAGC
ACGAAGCCACAGTTCAAATCCTACGATCCGCCGCACCCGCTCAATGTCTA
TAAAGAGCACAAGCTGCGGAGAAGGTGTTGAGACAGGGGCATGGGGGGTG
CAGGTATGTCGGTGCGATAGGAGGGAGGGGGAGGCGAGGACATGGTATCA
AATGCATGTAGACGACAATGAAATACTTGCATAGATAAGCGGCTTTCAAA
GCTGCGTCGCGGAAACCGGACAAATTTGTCACCGGCATATCCACCTCTCC
ATCAACTTCCGGCTGAAGCCCCTTCATTTCCGTCGAGCCAAGTCAAGCCA
AGATGATTTCTTTTTCCTTGATCGATACCAACGGGGGCTAAGCCGTTGCT
GGATTGAAGAGTCTTACTCGTCAAATCATACTTTCCCTCTATTCCGTCTC
CCTTCCCCCCCTCACGAACTATGTGATCCTCCGCGTCCGCGTCTTGTATG
GAGACAGCGTAGACCTGGCCGAATCCTCTATCACCCTTCCTCCTCACGGC
GTTTTCCCCTTTTCCTCTTTCTCTGAAAAGAGGGATAAGGCCAAAATTGG
CAGGATAAAAATGGGCTGCGCGCTATGCGACCCACACTGAAGACGTCGCT
CGCGTGCTTGCTGTCATGGTCGGCAAGTCCCTGCAGCAGCAGCACCACCA
CCACCACCACCATTACCAGCACCAACAGCAGCAGTAAAAGATGGAAGGAG
TGCTGTAGGTTATTTTTCACTTAAGTAGTAACGAGAAATGAAGCGAAAGA
GAGGCGTATGAGAAGGGAGGGAAGGCATACACGAACTATAGCATGAGTTT
ACTAATTGGAGATTTTGGAGCAGTCGACGAAGCCCTTGGAGGCAGACCTT
GACCCGCCACAAGGAGGGCGCCACGACCCGAAGATTGTAAGTGGTGCGAG
GAAGAAGGGGGGAAGAGGAGAAGGAGGACGAGAAAAAGAAGAATAGAATG
GACGGAAAAAGGAGGGGTGAGATACGTAGGTTCGTCCTTTCGCTGGTTCA
CACCTCTCGTTGACCTCCCGTCCGCTCCTTTTGTTACCATGCATCATGAC
AGGCGAGTTGGGCATCACCTCGTTACGAGCCGCATTGGGCGAGAATGTGG
GAAAGCCTAGACCACTGCGCGAGAGATTGACAGAAGTGCTCCAAAAGATC
TTGGTTGGCTGACCGCATCACTATATTCCTCGCCTTCTTCCTCCTCCACC
ACCACAACTACCATTACCACCACCATCACCACCGTGTCACTGTGTCTTTT
CGGAGCCGCTTTGTTACCCTTCATTTTGCTCGCACTTTTCTCATCGTTTG
TGCGATGGGGACTGAGTTGGAGTAACGGGCGAGTTTCATTCGATTTGGAG
ATAGAAACAGATCGAGACAGAGAGAGATTGCGTCCATATAAGGGGGAAAA
GAAGAGCAAAGACAAGGCGAAGACGAGCAACCGCAGATTCAACGTAACAA
TTTGCCTGCCCCATCCTCAGGCCCAAGCCACAGTTGCTGTTTAGGCGTTC
AAACTCTTCCTCCCTCCTTTCACCCCCTCCTCTTACAGCAATGCCATCCT
CCTCCGCCAGCGCCCGCCTCCGCCGCCTCCTCTCCTCCTCCCTCTCTACC
CCCTATCCACGAAGCCTGGCCATGCCCGGTGCGTTCAATGGTCTCGTTGC
ACGTGCAGTCGCACATGCAGGCTTTGAAGCTACCTATGTGTCAGGCGCGG
GCGTTGCTGCAGGAATGGGGTTGCCTGACATTGGACTGGCAGGTAAGCAG
AATGAGAGGTTGAAAGGCTTTGTGGGCGCAGACTCTGCCTTAGCTCCTTT
CTTTCCCTCTTGATTTTAGTTCCTTCCATTTCTCTTTTATACTCTCTTGC
AGCTCCCTGCTTCTCAGACGCCCAATCCCTTCTTCGCTCCCTTCCTCCCT
AGGCCTAGGAGTTTTTGTTCGCATAACCAAAGACATGTTATCTTGCTCCA
GACTCCCCCCCACCCCATCGACCTTCTCTCTCTCTCTGTCCCTCCCTCCT
CTTCTTTCCCTTCCTACATTGTTCACCTTCGGCAAATTTGCAACCCCTCA
TTTTCATCTTTCCCTCCCTCACTCCCTCCCTCTTTCTCCCAAGGCATCGA
GGATTTCACACGCGTCGTTCGCGACGTGTCCACCTGCTCCGGTCTCCCCT
TAATCGCCGACGCCGATACCGGAGGAGAGGGCGGGAGGGAGGGCGTG

Coding sequence (CDS) from alignment at scaffold_76:54968..57814+

>mRNA_10693 ID=mRNA_10693|Name=jgi.p|Nanoce1779_2|634393|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_76:54968..57814+ (Nannochloropsis oceanica)
ATGAGCTGTACTGCCGCTGCATCAATGCCTCCCCTGCCTGCCAACCTTGT
GCTGGGTGCTACAGGCATGCTGGGGCCGGCTATCCACCAAGCCTTGCGGA
TGTCACGTGTAAGCCAAGCGACGCAAGGAGGTTTGGTCCCCTGCGATGTA
ACGAATGAGACGAGCCTGCGTGCATTCCTAGCGTCTCAAGCCCCACAAGC
TGTCATCAATTGTGTGGCGAAACGATGGCCGGACGTGGTGGGGAAAGAGC
CGGCGAAAGCTCAGGTACTTCATATTCGCTTAGTTAAAATTTTGGCGGAA
GAAAGTGCCCGCCTACGTTTTTGTCAGGTGCATACGTTCACATATTACGC
GTTTGATAGCACGAAGCCACAGTTCAAATCCTACGATCCGCCGCACCCGC
TCAATGTCTATAAAGAGCACAAGCTGCGGAGAAGGTGTTGAATGAGCTGT
ACTGCCGCTGCATCAATGCCTCCCCTGCCTGCCAACCTTGTGCTGGGTGC
TACAGGCATGCTGGGGCCGGCTATCCACCAAGCCTTGCGGATGTCACGTG
TAAGCCAAGCGACGCAAGGAGGTTTGGTCCCCTGCGATGTAACGAATGAG
ACGAGCCTGCGTGCATTCCTAGCGTCTCAAGCCCCACAAGCTGTCATCAA
TTGTGTGGCGAAACGATGGCCGGACGTGGTGGGGAAAGAGCCGGCGAAAG
CTCAGGTACTTCATATTCGCTTAGTTAAAATTTTGGCGGAAGAAAGTGCC
CGCCTACGTTTTTGTCAGGTGCATACGTTCACATATTACGCGTTTGATAG
CACGAAGCCACAGTTCAAATCCTACGATCCGCCGCACCCGCTCAATGTCT
ATAAAGAGCACAAGCTGCGGAGAAGGTGTTGA

Synonyms

Publications