jgi.p|Nanoce1779_2|534296, mRNA_10689 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|534296
Unique Name	mRNA_10689
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1119
Alignment location	scaffold_76:43046..44215 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	534382
Track	FilteredModels2
ProteinId	534296

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_76	supercontig	scaffold_76:43046..44215 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|534296	gene_10689	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|534296	mRNA_10689-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10689	CDS_10689	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_76:43046..44215+
coding sequence from alignment at scaffold_76:43046..44215+

mRNA sequence

>mRNA_10689 ID=mRNA_10689|Name=jgi.p|Nanoce1779_2|534296|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp
ATGCATCAGCACGTGCCCATTGAAGAGAACCAGCCTTGGCACCAGTCCCA
GTACCAGCAGCAGTCACGACAAACGCAGCAACACCAGGCGTACAACCCTG
CCCAGAATGGGGTGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAA
CAACAACAACAATACCAGCCCCACCAACAACTGCAGCCAGGCGTGAATGT
CTTCAACCCTGGGGCCTACAAGCAGCAGCAGCAGCAGCAACAGCATCTAC
AGCAGCAACAACCACAACAGCAGCAACAGCAGGCGCCCTATGGAGGAGGG
CCGCCGTCGACGTTTGGGAGACATCCGGGCGGGCAGCAAAACATGGACTT
TGGCCTGGACGCTATCACTGCCGCGGCCAACAGCCAAGCGTTTAGCATGG
GAGTGGGAATGGGGCAAGATTACCTGAATGCGAGTGTGAATCGGTACATT
CCTTGGTTTACCTCTGTGTGGCAGGGCCTCAAATATTACTTTGCCGTAAA
TCACCACTATGTGAAACGTAAGCTTTTCACTTTGGTCTTCCCCTTCCGCA
AGCGGCACTGGAGAAGAGAGGCCAAGGACGATGTGGGGGGAGGAAGGCCG
CATTATCAGGTGCCGATGCTGGATGAGAATGCGCCCGACCTCTACATTCC
GCTGATGGCCTTCGTGACGTATGTGCTGGTGACGGGCTATGCGAAGGGGA
CAAAGAACTCGTTCACACCTGAGGTGTTGGTGGAGGTGACATCGTCGTGC
TTGGTGATGCAGCTGTTGGAGATAGCAGTTATCCGTCTGGGTCTTTACTT
ACTCCAAGCCCCCGCCTCCCTCCTTGACCTTCTGGCCGTTACGGGTTACA
AATACGTCGCTCTAAACATCAACATGCTCCTTGGCCTTAACCTCGGGTCG
CGCATTTATCTCGCTGTCATGATTTATACGGGGCTAGCCATGGCTTACTT
TTCTCTCAAGACCTTTGCGCAAGCTGTGCGCCTGGCAGGGCCGCGGGACC
TAGCCTCGGCCCCTGTCCGGGTTGAGCTGATGGTGTTGGGGTTTGCTTTG
CTTCAATTTTTTTCCGTGTGGTGGTTAGGATATTCTGGGGATTTAAAGAC
GATGCCGACTAATGTATAA

protein sequence of jgi.p|Nanoce1779_2|534296

>mRNA_10689-protein ID=mRNA_10689-protein|Name=jgi.p|Nanoce1779_2|534296|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MHQHVPIEENQPWHQSQYQQQSRQTQQHQAYNPAQNGVPQQQQQQQQQQQ
QQQQYQPHQQLQPGVNVFNPGAYKQQQQQQQHLQQQQPQQQQQQAPYGGG
PPSTFGRHPGGQQNMDFGLDAITAAANSQAFSMGVGMGQDYLNASVNRYI
PWFTSVWQGLKYYFAVNHHYVKRKLFTLVFPFRKRHWRREAKDDVGGGRP
HYQVPMLDENAPDLYIPLMAFVTYVLVTGYAKGTKNSFTPEVLVEVTSSC
LVMQLLEIAVIRLGLYLLQAPASLLDLLAVTGYKYVALNINMLLGLNLGS
RIYLAVMIYTGLAMAYFSLKTFAQAVRLAGPRDLASAPVRVELMVLGFAL
LQFFSVWWLGYSGDLKTMPTNV*

mRNA from alignment at scaffold_76:43046..44215+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10689 ID=mRNA_10689|Name=jgi.p|Nanoce1779_2|534296|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp|location=Sequence derived from alignment at scaffold_76:43046..44215+ (Nannochloropsis oceanica)
ATGCATCAGCACGTGCCCATTGAAGAGAACCAGCCTTGGCACCAGTCCCA
GTACCAGCAGCAGTCACGACAAACGCAGCAACACCAGGCGTACAACCCTG
CCCAGAATGGGGTGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAA
CAACAACAACAATACCAGCCCCACCAACAACTGCAGCCAGGCGTGAATGT
CTTCAACCCTGGGGCCTACAAGCAGCAGCAGCAGCAGCAACAGCATCTAC
AGCAGCAACAACCACAACAGCAGCAACAGCAGGCGCCCTATGGAGGAGGG
CCGCCGTCGACGTTTGGGAGACATCCGGGCGGGCAGCAAAACATGGACTT
TGGCCTGGACGCTATCACTGCCGCGGCCAACAGCCAAGCGTTTAGCATGG
GAGTGGGAATGGGGCAAGATTACCTGAATGCGAGTGTGAATCGGTACATT
CCTTGGTTTACCTCTGTGTGGCAGGGCCTCAAATATTACTTTGCCGTAAA
TCACCACTATGTGAAACGTAAGCTTTTCACTTTGGTCTTCCCCTTCCGCA
AGCGGCACTGGAGAAGAGAGGCCAAGGACGATGGTGACGTGGGAGTAGGG
GGTGGAGGGCAGATAGGGAGTTCGAGTGGAGGAGTGGGGGGAGGAAGGCC
GCATTATCAGGTGCCGATGCTGGATGAGAATGCGCCCGACCTCTACATTC
CGCTGATGGCCTTCGTGACGTATGTGCTGGTGACGGGCTATGCGAAGGGG
ACAAAGAACTCGTTCACACCTGAGGTGTTGGTGGAGGTGACATCGTCGTG
CTTGGTGATGCAGCTGTTGGAGATAGCAGTTATCCGTCTGGGTCTTTACT
TACTCCAAGCCCCCGCCTCCCTCCTTGACCTTCTGGCCGTTACGGGTTAC
AAATACGTCGCTCTAAACATCAACATGCTCCTTGGCCTTAACCTCGGGTC
GCGCATTTATCTCGCTGTCATGATTTATACGGGGCTAGCCATGGCTTACT
TTTCTCTCAAGACCTTTGCGCAAGCTGTGCGCCTGGCAGGGCCGCGGGAC
CTAGCCTCGGCCCCTGTCCGGGTTGAGCTGATGGTGTTGGGGTTTGCTTT
GCTTCAATTTTTTTCCGTGTGGTGGTTAGGATATTCTGGGGATTTAAAGA
CGATGCCGACTAATGTATAA

Coding sequence (CDS) from alignment at scaffold_76:43046..44215+

>mRNA_10689 ID=mRNA_10689|Name=jgi.p|Nanoce1779_2|534296|organism=Nannochloropsis oceanica|type=CDS|length=2238bp|location=Sequence derived from alignment at scaffold_76:43046..44215+ (Nannochloropsis oceanica)
ATGCATCAGCACGTGCCCATTGAAGAGAACCAGCCTTGGCACCAGTCCCA
GTACCAGCAGCAGTCACGACAAACGCAGCAACACCAGGCGTACAACCCTG
CCCAGAATGGGGTGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAA
CAACAACAACAATACCAGCCCCACCAACAACTGCAGCCAGGCGTGAATGT
CTTCAACCCTGGGGCCTACAAGCAGCAGCAGCAGCAGCAACAGCATCTAC
AGCAGCAACAACCACAACAGCAGCAACAGCAGGCGCCCTATGGAGGAGGG
CCGCCGTCGACGTTTGGGAGACATCCGGGCGGGCAGCAAAACATGGACTT
TGGCCTGGACGCTATCACTGCCGCGGCCAACAGCCAAGCGTTTAGCATGG
GAGTGGGAATGGGGCAAGATTACCTGAATGCGAGTGTGAATCGGTACATT
CCTTGGTTTACCTCTGTGTGGCAGGGCCTCAAATATTACTTTGCCGTAAA
TCACCACTATGTGAAACGTAAGCTTTTCACTTTGGTCTTCCCCTTCCGCA
AGCGGCACTGGAGAAGAGAGGCCAAGGACGATGTGGGGGGAGGAAGGCCG
CATTATCAGGTGCCGATGCTGGATGAGAATGCGCCCGACCTCTACATTCC
GCTGATGGCCTTCGTGACGTATGTGCTGGTGACGGGCTATGCGAAGGGGA
CAAAGAACTCGTTCACACCTGAGGTGTTGGTGGAGGTGACATCGTCGTGC
TTGGTGATGCAGCTGTTGGAGATAGCAGTTATCCGTCTGGGTCTTTACTT
ACTCCAAGCCCCCGCCTCCCTCCTTGACCTTCTGGCCGTTACGGGTTACA
AATACGTCGCTCTAAACATCAACATGCTCCTTGGCCTTAACCTCGGGTCG
CGCATTTATCTCGCTGTCATGATTTATACGGGGCTAGCCATGGCTTACTT
TTCTCTCAAGACCTTTGCGCAAGCTGTGCGCCTGGCAGGGCCGCGGGACC
TAGCCTCGGCCCCTGTCCGGGTTGAGCTGATGGTGTTGGGGTTTGCTTTG
CTTCAATTTTTTTCCGTGTGGTGGTTAGGATATTCTGGGGATTTAAAGAC
GATGCCGACTAATGTATAAATGCATCAGCACGTGCCCATTGAAGAGAACC
AGCCTTGGCACCAGTCCCAGTACCAGCAGCAGTCACGACAAACGCAGCAA
CACCAGGCGTACAACCCTGCCCAGAATGGGGTGCCCCAGCAGCAGCAGCA
GCAGCAGCAGCAACAACAACAACAACAACAATACCAGCCCCACCAACAAC
TGCAGCCAGGCGTGAATGTCTTCAACCCTGGGGCCTACAAGCAGCAGCAG
CAGCAGCAACAGCATCTACAGCAGCAACAACCACAACAGCAGCAACAGCA
GGCGCCCTATGGAGGAGGGCCGCCGTCGACGTTTGGGAGACATCCGGGCG
GGCAGCAAAACATGGACTTTGGCCTGGACGCTATCACTGCCGCGGCCAAC
AGCCAAGCGTTTAGCATGGGAGTGGGAATGGGGCAAGATTACCTGAATGC
GAGTGTGAATCGGTACATTCCTTGGTTTACCTCTGTGTGGCAGGGCCTCA
AATATTACTTTGCCGTAAATCACCACTATGTGAAACGTAAGCTTTTCACT
TTGGTCTTCCCCTTCCGCAAGCGGCACTGGAGAAGAGAGGCCAAGGACGA
TGTGGGGGGAGGAAGGCCGCATTATCAGGTGCCGATGCTGGATGAGAATG
CGCCCGACCTCTACATTCCGCTGATGGCCTTCGTGACGTATGTGCTGGTG
ACGGGCTATGCGAAGGGGACAAAGAACTCGTTCACACCTGAGGTGTTGGT
GGAGGTGACATCGTCGTGCTTGGTGATGCAGCTGTTGGAGATAGCAGTTA
TCCGTCTGGGTCTTTACTTACTCCAAGCCCCCGCCTCCCTCCTTGACCTT
CTGGCCGTTACGGGTTACAAATACGTCGCTCTAAACATCAACATGCTCCT
TGGCCTTAACCTCGGGTCGCGCATTTATCTCGCTGTCATGATTTATACGG
GGCTAGCCATGGCTTACTTTTCTCTCAAGACCTTTGCGCAAGCTGTGCGC
CTGGCAGGGCCGCGGGACCTAGCCTCGGCCCCTGTCCGGGTTGAGCTGAT
GGTGTTGGGGTTTGCTTTGCTTCAATTTTTTTCCGTGTGGTGGTTAGGAT
ATTCTGGGGATTTAAAGACGATGCCGACTAATGTATAA

Synonyms

Publications