jgi.p|Nanoce1779_2|613554, mRNA_10673 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613554
Unique NamemRNA_10673
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length592
Alignment locationscaffold_76:9438..10029 +

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Properties
Property NameValue
TranscriptId613640
TrackFilteredModels2
ProteinId613554
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:9438..10029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613554gene_10673Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613554mRNA_10673-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10673CDS_10673Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10673 ID=mRNA_10673|Name=jgi.p|Nanoce1779_2|613554|organism=Nannochloropsis oceanica|type=mRNA|length=592bp
GAAAAATGAATTCGGACGCTGTTGCTGTTGTTGCTGCTGTTGTTGTTGCT
GCTGTTGCTGCTGTTGCTCCTGTTGCTCCTGTTGTTGTTGCTCATGTTGT
TGTTGCTGCTGCTGCTGCTGCTGCTCCTGGTAGTGGTGCTGCTGCCCTCC
ACTCTCTCCCCTGTCCACCACCATCGCTTCAAGGTCGGATCGATGATGTT
GCCACTCCCCATTACTTGACTCATCGCCATAATTATCACCATTACCACCA
TCATTTTTGTTTGCCCCTCGCAACAAAACAGTTGATTTCGAGAATGAAAA
AGGGTGATTGTCAACAGTTGGAGAACCATAGGTCGGGTTTAATTGCCGCG
AAGCCTGATTGGTGCTTTTACAAAGAGGAGGGTAATGCCCTCCTCCTCTT
CCTCCTTCTCCTCTTTCTTCTTCTTCCATCTCTCCCCATCTCTCGTCATC
TCTCCCACCACCATCCAAGGCTGGGGAGGCAGTGACAAGGAGGGGAGTGA
GAGGCTCGTACTGCAGAGGGAAGTCAGACGGACGGATGGACGAGAACGCA
TGTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
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protein sequence of jgi.p|Nanoce1779_2|613554

>mRNA_10673-protein ID=mRNA_10673-protein|Name=jgi.p|Nanoce1779_2|613554|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MNSDAVAVVAAVVVAAVAAVAPVAPVVVAHVVVAAAAAAAPGSGAAALHS
LPCPPPSLQGRIDDVATPHYLTHRHNYHHYHHHFCLPLATKQLISRMKKG
DCQQLENHRSGLIAAKPDWCFYKEEGNALLLFLLLLFLLLPSLPISRHLS
HHHPRLGRQ*
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mRNA from alignment at scaffold_76:9438..10029+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10673 ID=mRNA_10673|Name=jgi.p|Nanoce1779_2|613554|organism=Nannochloropsis oceanica|type=mRNA|length=592bp|location=Sequence derived from alignment at scaffold_76:9438..10029+ (Nannochloropsis oceanica)
GAAAAATGAATTCGGACGCTGTTGCTGTTGTTGCTGCTGTTGTTGTTGCT
GCTGTTGCTGCTGTTGCTCCTGTTGCTCCTGTTGTTGTTGCTCATGTTGT
TGTTGCTGCTGCTGCTGCTGCTGCTCCTGGTAGTGGTGCTGCTGCCCTCC
ACTCTCTCCCCTGTCCACCACCATCGCTTCAAGGTCGGATCGATGATGTT
GCCACTCCCCATTACTTGACTCATCGCCATAATTATCACCATTACCACCA
TCATTTTTGTTTGCCCCTCGCAACAAAACAGTTGATTTCGAGAATGAAAA
AGGGTGATTGTCAACAGTTGGAGAACCATAGGTCGGGTTTAATTGCCGCG
AAGCCTGATTGGTGCTTTTACAAAGAGGAGGGTAATGCCCTCCTCCTCTT
CCTCCTTCTCCTCTTTCTTCTTCTTCCATCTCTCCCCATCTCTCGTCATC
TCTCCCACCACCATCCAAGGCTGGGGAGGCAGTGACAAGGAGGGGAGTGA
GAGGCTCGTACTGCAGAGGGAAGTCAGACGGACGGATGGACGAGAACGCA
TGTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
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Coding sequence (CDS) from alignment at scaffold_76:9438..10029+

>mRNA_10673 ID=mRNA_10673|Name=jgi.p|Nanoce1779_2|613554|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_76:9438..10029+ (Nannochloropsis oceanica)
ATGAATTCGGACGCTGTTGCTGTTGTTGCTGCTGTTGTTGTTGCTGCTGT
TGCTGCTGTTGCTCCTGTTGCTCCTGTTGTTGTTGCTCATGTTGTTGTTG
CTGCTGCTGCTGCTGCTGCTCCTGGTAGTGGTGCTGCTGCCCTCCACTCT
CTCCCCTGTCCACCACCATCGCTTCAAGGTCGGATCGATGATGTTGCCAC
TCCCCATTACTTGACTCATCGCCATAATTATCACCATTACCACCATCATT
TTTGTTTGCCCCTCGCAACAAAACAGTTGATTTCGAGAATGAAAAAGGGT
GATTGTCAACAGTTGGAGAACCATAGGTCGGGTTTAATTGCCGCGAAGCC
TGATTGGTGCTTTTACAAAGAGGAGGGTAATGCCCTCCTCCTCTTCCTCC
TTCTCCTCTTTCTTCTTCTTCCATCTCTCCCCATCTCTCGTCATCTCTCC
CACCACCATCCAAGGCTGGGGAGGCAGTGA
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Synonyms
Publications