jgi.p|Nanoce1779_2|561202, mRNA_10688 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|561202
Unique Name	mRNA_10688
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3259
Alignment location	scaffold_76:39902..43160 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	561288
Track	FilteredModels2
ProteinId	561202

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_76	supercontig	scaffold_76:39902..43160 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|561202	gene_10688	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|561202	mRNA_10688-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10688	CDS_10688	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_76:39902..43160-
coding sequence from alignment at scaffold_76:39902..43160-

mRNA sequence

>mRNA_10688 ID=mRNA_10688|Name=jgi.p|Nanoce1779_2|561202|organism=Nannochloropsis oceanica|type=mRNA|length=3259bp
GCACCCCATTCTGGGCAGGGTTGTACGCCTGGTGTTGCTGCGTTTGTCGT
GACTGCTGCTGGTACTGGGACTGGTGCCAAGGCTGGTTCTCTTCAATGGG
CACGTGCTGATGCATTGCTGGGCGGGGTTTGATGGCGCACTGTGGGTGTG
GGGATAACGAAGGCGTGTTCAAATATGGTGATGATGCGGGCAGTGTGGAG
CAGACCATTTCAGGCCTGCTAGCAAGAGCACAGTGCGCTTTGATATCACG
GTCAGGTTAATAACGAGGGAATGGCCTGTGCGTGTGGGGTGCTAATTGGC
GCTCTAGTGCTGGGGTATAGCCGAAAGGAAGTGATGCCCCCCGCGAAAAC
CATGCATGTCATTCTTCTATGGCGCCTTGCGCCTACTTTCTCCCTTCTTA
ATTTTAATTTTCAAAGCATTTCATTTCATCTGTACACCACACAGGAGCGC
CCCACACATGTTACTCACTAGCATGACCCTCATCTCATCGTTATCTCCTT
TCCACACCTAGCGAAAAACAACAGACGTCACGCCAAAGCCTGCAATCCCT
CACATCACCCCCTCCCTCTTTCCCCGCCTAAAACGCCATCATCCCTCGCA
CCACGACCAACAATGTCCACGAGCGGCGACGCCCCTGCGATATGCCCCTA
CGCCGGTACGAAACGCAAGCCCTCTGCAGCGGCCGCAGCCGCTGCTGATG
GAGCTACCTACCGTCAAGGTCGGACCGACGGGCCTGTTAAATGCACCTGG
ACCCCCAACACTACGGAGGCCTCCCCGCACCTGCACGAAACTCACCAGCC
CAAGCCGAAAATCCTCAATACGATTCTCGATCATATTGGTGATACTCCGC
TGGTGCGCATCAACAAAATCACGGAGGCCGAAGGGATCAAGTGTGAGGTT
CTGGCCAAGTGTGAGTTTTTCAATTCGGGCGGCTCCGTGAAGGACAGAAT
TGGAAAGCGGATGATTGAGGACGCGGAGCGTTCGGGGAGGATAAAGCCGG
GGGACACGTTGATTGAGCCCACCTCAGGGAATACAGGGATTGGCCTTGCC
TTGGCTGCCGCGATTAAAGGGTACCGAATGATCATTACCTTGCCCGAGAA
AATGTCGCGGGAAAAAGTCGATATCCTCAAGGCGTTGGGCGCGGAGATCA
TCAGAACACCTACGGAAGCTGCGTATGACTCTCCTGACTCTCATATTGGC
GTGGCGAAGCGCTTGCAGTCTGAGATTCCGAACAGTCACATTTTGGATCA
GTACTCGAACGCGTCTAATCCCATTGCGCATTATGACCACACCGCGGAGG
AGCTCCTCGAGCAGACGGGGGGACAGATTGACGTTCTTGTGATTTCGGCA
GGAACCGGGGGCACCTTAACAGGGATAGGGAGAAAGTTGAAGGAGCGATT
GCCGCATTTGACGATTGTGGGGGTGGATCCCGTTGGGTCTATTTTAGCGG
AGCCGGATAGTTTGAATGACCGAGATAGGCTGACCAGTTATAAGGTGGAG
GGCATTGGCTATGACTTCGTTCCCACAGTCTTGGATCGGGCATTGGTTGA
TGAGTGGTTAAAGACGGATGATAGGGAGTCGTTGTTGATGGCCCGAAGGC
TGATCAGAGACGAAGGCCTGTTGTGTGGCGGGTCATGTGGGTCGGCAATG
GCAGCAGCAGTGAGGGTGGCGAAAAGTCTGCCGGCGGGGAAGAGGGTGGT
GGTGCTGTTGCCGGATTCAAGTCGAAATTACATGACAAAGCTGGTGTCGG
ACCAGTGGATGATTGAAGCGGGTTTCGCTGACGGTAATCTCATCGACCGC
CCGCAGTACAAAACCTGGTGGGCCAAGAAACGCGTGCAAGACCTTCACCT
CCAAACCCCCATAACCATCGCCCCCGGCGTCACCTGCAAGGAAGCAATCG
GTCTCCTCTCAGCACAGGGGTTTGATACGTTGCCCGTGATTTCGGTGGAT
GGGCAGATCCTGGGGGTGGTGACCGAAGGGAACTTGACCGCTAAGCTTGT
CTCCAACAGGGTCCAGCCGGATGATGACATTACATGTGCGTTGTACCCGC
AGTTCCGCAAGGTAAACATGGGGGACACACTCGGGGACTTGGCCAACATT
TTCGACAGGGACCACTATGCTTTGGTGGTGGCGGAGCAATTGCAGTACAC
GGGGGGAAAGAGTATGATGATGAAAGGTGGGGGAGGAGGGGAGGGAGGGG
GGGAGAAGAGGGTGTTGCCGAGTGCAACGAGGTCGGTGGTGACGGGCGTG
GCGACGCGGATCGATTTATTGAATTATATTTCAAGTAAACCCGTGGAAGA
AGTGGGATATGGGGGTGTCTGAGAGGAATGTTAGAGGGAAGGAAGGATGG
ATGGAGGGAGGGACGGAAGGGCTTGAGAGTGATGGGTGGGGATGTAGAAT
GTTTTTTCTGGGTTGCCTTCAATTTTTCTCCGTCGGAGTGATGAAAGAGG
AAAGCGAAAATTTGGGCATTTATGTGCATAGAGTGTGCCTGTCACATAGA
ACATGTGTGTTTTCTCATTCAATAATTGTTAATTCGAGGGATAGAATATT
GTTAGTGCGCTGCAATGTAAACTCTTGCTATAATTTATGGAGCGGGAGAC
GCACACGTCTGCAACAACAGCAAGGGAAGAGACATGACAGCGACTGGTAA
GAGCAGTACGAGGAAGAAGAGCAAGAGCAGCATCAGCACTGGCGGCAGCA
GTATAAGCAGAAAGAGCTGCAGTAGCATATCTTAGACAAAGCAAAAAAAT
GTCGACAGATAGGGAGATAAAAAGAAGGACAGCTGCACTTTAAATAAGCA
AAAGAGGGAAGAAGTATAACGGATAGGGGGGTTGGGGACGTGGCAATACT
GGCGTGTGTCACAGCCTATGTACATTTTGACATGTCCGATGGCTGACTGG
CATTTGAGCAGCACCCCCCCCCCGCTCCCCGAGTTAATGCTTAGTTGCAA
CCCCTTAATGGAAATAAATATGAAGAGAGGCAGGAGAAGAAGGATGCACC
AGTAGCGAATAAGCAAGTTGTTTTTATCTACGTCGGGCGGTCTGTCGTAT
AGCGAAACAATGCGGAAAGATGAAAGAGAACACAGAGGAGAAAATGTTTT
GGAGATGGATGATATCCAACCGACCAGAAAAAGAAAGGGCAAGAAAAAAG
GTAGATGCCGAAAGATGTTGATAGCTAGCTTCCTTTGATGAGACGTGAGT
ACGCAGCCGGTCGAAAAGATGAAAAAATTGGAGGGGAAAATAAACGTACG
AGTCAGCCC

protein sequence of jgi.p|Nanoce1779_2|561202

>mRNA_10688-protein ID=mRNA_10688-protein|Name=jgi.p|Nanoce1779_2|561202|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MSTSGDAPAICPYAGTKRKPSAAAAAAADGATYRQGRTDGPVKCTWTPNT
TEASPHLHETHQPKPKILNTILDHIGDTPLVRINKITEAEGIKCEVLAKC
EFFNSGGSVKDRIGKRMIEDAERSGRIKPGDTLIEPTSGNTGIGLALAAA
IKGYRMIITLPEKMSREKVDILKALGAEIIRTPTEAAYDSPDSHIGVAKR
LQSEIPNSHILDQYSNASNPIAHYDHTAEELLEQTGGQIDVLVISAGTGG
TLTGIGRKLKERLPHLTIVGVDPVGSILAEPDSLNDRDRLTSYKVEGIGY
DFVPTVLDRALVDEWLKTDDRESLLMARRLIRDEGLLCGGSCGSAMAAAV
RVAKSLPAGKRVVVLLPDSSRNYMTKLVSDQWMIEAGFADGNLIDRPQYK
TWWAKKRVQDLHLQTPITIAPGVTCKEAIGLLSAQGFDTLPVISVDGQIL
GVVTEGNLTAKLVSNRVQPDDDITCALYPQFRKVNMGDTLGDLANIFDRD
HYALVVAEQLQYTGGKSMMMKGGGGGEGGGEKRVLPSATRSVVTGVATRI
DLLNYISSKPVEEVGYGGV*

mRNA from alignment at scaffold_76:39902..43160-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10688 ID=mRNA_10688|Name=jgi.p|Nanoce1779_2|561202|organism=Nannochloropsis oceanica|type=mRNA|length=3259bp|location=Sequence derived from alignment at scaffold_76:39902..43160- (Nannochloropsis oceanica)
GCACCCCATTCTGGGCAGGGTTGTACGCCTGGTGTTGCTGCGTTTGTCGT
GACTGCTGCTGGTACTGGGACTGGTGCCAAGGCTGGTTCTCTTCAATGGG
CACGTGCTGATGCATTGCTGGGCGGGGTTTGATGGCGCACTGTGGGTGTG
GGGATAACGAAGGCGTGTTCAAATATGGTGATGATGCGGGCAGTGTGGAG
CAGACCATTTCAGGCCTGCTAGCAAGAGCACAGTGCGCTTTGATATCACG
GTCAGGTTAATAACGAGGGAATGGCCTGTGCGTGTGGGGTGCTAATTGGC
GCTCTAGTGCTGGGGTATAGCCGAAAGGAAGTGATGCCCCCCGCGAAAAC
CATGCATGTCATTCTTCTATGGCGCCTTGCGCCTACTTTCTCCCTTCTTA
ATTTTAATTTTCAAAGCATTTCATTTCATCTGTACACCACACAGGAGCGC
CCCACACATGTTACTCACTAGCATGACCCTCATCTCATCGTTATCTCCTT
TCCACACCTAGCGAAAAACAACAGACGTCACGCCAAAGCCTGCAATCCCT
CACATCACCCCCTCCCTCTTTCCCCGCCTAAAACGCCATCATCCCTCGCA
CCACGACCAACAATGTCCACGAGCGGCGACGCCCCTGCGATATGCCCCTA
CGCCGGTACGAAACGCAAGCCCTCTGCAGCGGCCGCAGCCGCTGCTGATG
GAGCTACCTACCGTCAAGGTCGGACCGACGGGCCTGTTAAATGCACCTGG
ACCCCCAACACTACGGAGGCCTCCCCGCACCTGCACGAAACTCACCAGCC
CAAGCCGAAAATCCTCAATACGATTCTCGATCATATTGGTGATACTCCGC
TGGTGCGCATCAACAAAATCACGGAGGCCGAAGGGATCAAGTGTGAGGTT
CTGGCCAAGTGTGAGTTTTTCAATTCGGGCGGCTCCGTGAAGGACAGAAT
TGGAAAGCGGATGATTGAGGACGCGGAGCGTTCGGGGAGGATAAAGCCGG
GGGACACGTTGATTGAGCCCACCTCAGGGAATACAGGGATTGGCCTTGCC
TTGGCTGCCGCGATTAAAGGGTACCGAATGATCATTACCTTGCCCGAGAA
AATGTCGCGGGAAAAAGTCGATATCCTCAAGGCGTTGGGCGCGGAGATCA
TCAGAACACCTACGGAAGCTGCGTATGACTCTCCTGACTCTCATATTGGC
GTGGCGAAGCGCTTGCAGTCTGAGATTCCGAACAGTCACATTTTGGATCA
GTACTCGAACGCGTCTAATCCCATTGCGCATTATGACCACACCGCGGAGG
AGCTCCTCGAGCAGACGGGGGGACAGATTGACGTTCTTGTGATTTCGGCA
GGAACCGGGGGCACCTTAACAGGGATAGGGAGAAAGTTGAAGGAGCGATT
GCCGCATTTGACGATTGTGGGGGTGGATCCCGTTGGGTCTATTTTAGCGG
AGCCGGATAGTTTGAATGACCGAGATAGGCTGACCAGTTATAAGGTGGAG
GGCATTGGCTATGACTTCGTTCCCACAGTCTTGGATCGGGCATTGGTTGA
TGAGTGGTTAAAGACGGATGATAGGGAGTCGTTGTTGATGGCCCGAAGGC
TGATCAGAGACGAAGGCCTGTTGTGTGGCGGGTCATGTGGGTCGGCAATG
GCAGCAGCAGTGAGGGTGGCGAAAAGTCTGCCGGCGGGGAAGAGGGTGGT
GGTGCTGTTGCCGGATTCAAGTCGAAATTACATGACAAAGCTGGTGTCGG
ACCAGTGGATGATTGAAGCGGGTTTCGCTGACGGTAATCTCATCGACCGC
CCGCAGTACAAAACCTGGTGGGCCAAGAAACGCGTGCAAGACCTTCACCT
CCAAACCCCCATAACCATCGCCCCCGGCGTCACCTGCAAGGAAGCAATCG
GTCTCCTCTCAGCACAGGGGTTTGATACGTTGCCCGTGATTTCGGTGGAT
GGGCAGATCCTGGGGGTGGTGACCGAAGGGAACTTGACCGCTAAGCTTGT
CTCCAACAGGGTCCAGCCGGATGATGACATTACATGTGCGTTGTACCCGC
AGTTCCGCAAGGTAAACATGGGGGACACACTCGGGGACTTGGCCAACATT
TTCGACAGGGACCACTATGCTTTGGTGGTGGCGGAGCAATTGCAGTACAC
GGGGGGAAAGAGTATGATGATGAAAGGTGGGGGAGGAGGGGAGGGAGGGG
GGGAGAAGAGGGTGTTGCCGAGTGCAACGAGGTCGGTGGTGACGGGCGTG
GCGACGCGGATCGATTTATTGAATTATATTTCAAGTAAACCCGTGGAAGA
AGTGGGATATGGGGGTGTCTGAGAGGAATGTTAGAGGGAAGGAAGGATGG
ATGGAGGGAGGGACGGAAGGGCTTGAGAGTGATGGGTGGGGATGTAGAAT
GTTTTTTCTGGGTTGCCTTCAATTTTTCTCCGTCGGAGTGATGAAAGAGG
AAAGCGAAAATTTGGGCATTTATGTGCATAGAGTGTGCCTGTCACATAGA
ACATGTGTGTTTTCTCATTCAATAATTGTTAATTCGAGGGATAGAATATT
GTTAGTGCGCTGCAATGTAAACTCTTGCTATAATTTATGGAGCGGGAGAC
GCACACGTCTGCAACAACAGCAAGGGAAGAGACATGACAGCGACTGGTAA
GAGCAGTACGAGGAAGAAGAGCAAGAGCAGCATCAGCACTGGCGGCAGCA
GTATAAGCAGAAAGAGCTGCAGTAGCATATCTTAGACAAAGCAAAAAAAT
GTCGACAGATAGGGAGATAAAAAGAAGGACAGCTGCACTTTAAATAAGCA
AAAGAGGGAAGAAGTATAACGGATAGGGGGGTTGGGGACGTGGCAATACT
GGCGTGTGTCACAGCCTATGTACATTTTGACATGTCCGATGGCTGACTGG
CATTTGAGCAGCACCCCCCCCCCGCTCCCCGAGTTAATGCTTAGTTGCAA
CCCCTTAATGGAAATAAATATGAAGAGAGGCAGGAGAAGAAGGATGCACC
AGTAGCGAATAAGCAAGTTGTTTTTATCTACGTCGGGCGGTCTGTCGTAT
AGCGAAACAATGCGGAAAGATGAAAGAGAACACAGAGGAGAAAATGTTTT
GGAGATGGATGATATCCAACCGACCAGAAAAAGAAAGGGCAAGAAAAAAG
GTAGATGCCGAAAGATGTTGATAGCTAGCTTCCTTTGATGAGACGTGAGT
ACGCAGCCGGTCGAAAAGATGAAAAAATTGGAGGGGAAAATAAACGTACG
AGTCAGCCC

Coding sequence (CDS) from alignment at scaffold_76:39902..43160-

>mRNA_10688 ID=mRNA_10688|Name=jgi.p|Nanoce1779_2|561202|organism=Nannochloropsis oceanica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_76:39902..43160- (Nannochloropsis oceanica)
ATGTCCACGAGCGGCGACGCCCCTGCGATATGCCCCTACGCCGGTACGAA
ACGCAAGCCCTCTGCAGCGGCCGCAGCCGCTGCTGATGGAGCTACCTACC
GTCAAGGTCGGACCGACGGGCCTGTTAAATGCACCTGGACCCCCAACACT
ACGGAGGCCTCCCCGCACCTGCACGAAACTCACCAGCCCAAGCCGAAAAT
CCTCAATACGATTCTCGATCATATTGGTGATACTCCGCTGGTGCGCATCA
ACAAAATCACGGAGGCCGAAGGGATCAAGTGTGAGGTTCTGGCCAAGTGT
GAGTTTTTCAATTCGGGCGGCTCCGTGAAGGACAGAATTGGAAAGCGGAT
GATTGAGGACGCGGAGCGTTCGGGGAGGATAAAGCCGGGGGACACGTTGA
TTGAGCCCACCTCAGGGAATACAGGGATTGGCCTTGCCTTGGCTGCCGCG
ATTAAAGGGTACCGAATGATCATTACCTTGCCCGAGAAAATGTCGCGGGA
AAAAGTCGATATCCTCAAGGCGTTGGGCGCGGAGATCATCAGAACACCTA
CGGAAGCTGCGTATGACTCTCCTGACTCTCATATTGGCGTGGCGAAGCGC
TTGCAGTCTGAGATTCCGAACAGTCACATTTTGGATCAGTACTCGAACGC
GTCTAATCCCATTGCGCATTATGACCACACCGCGGAGGAGCTCCTCGAGC
AGACGGGGGGACAGATTGACGTTCTTGTGATTTCGGCAGGAACCGGGGGC
ACCTTAACAGGGATAGGGAGAAAGTTGAAGGAGCGATTGCCGCATTTGAC
GATTGTGGGGGTGGATCCCGTTGGGTCTATTTTAGCGGAGCCGGATAGTT
TGAATGACCGAGATAGGCTGACCAGTTATAAGGTGGAGGGCATTGGCTAT
GACTTCGTTCCCACAGTCTTGGATCGGGCATTGGTTGATGAGTGGTTAAA
GACGGATGATAGGGAGTCGTTGTTGATGGCCCGAAGGCTGATCAGAGACG
AAGGCCTGTTGTGTGGCGGGTCATGTGGGTCGGCAATGGCAGCAGCAGTG
AGGGTGGCGAAAAGTCTGCCGGCGGGGAAGAGGGTGGTGGTGCTGTTGCC
GGATTCAAGTCGAAATTACATGACAAAGCTGGTGTCGGACCAGTGGATGA
TTGAAGCGGGTTTCGCTGACGGTAATCTCATCGACCGCCCGCAGTACAAA
ACCTGGTGGGCCAAGAAACGCGTGCAAGACCTTCACCTCCAAACCCCCAT
AACCATCGCCCCCGGCGTCACCTGCAAGGAAGCAATCGGTCTCCTCTCAG
CACAGGGGTTTGATACGTTGCCCGTGATTTCGGTGGATGGGCAGATCCTG
GGGGTGGTGACCGAAGGGAACTTGACCGCTAAGCTTGTCTCCAACAGGGT
CCAGCCGGATGATGACATTACATGTGCGTTGTACCCGCAGTTCCGCAAGG
TAAACATGGGGGACACACTCGGGGACTTGGCCAACATTTTCGACAGGGAC
CACTATGCTTTGGTGGTGGCGGAGCAATTGCAGTACACGGGGGGAAAGAG
TATGATGATGAAAGGTGGGGGAGGAGGGGAGGGAGGGGGGGAGAAGAGGG
TGTTGCCGAGTGCAACGAGGTCGGTGGTGACGGGCGTGGCGACGCGGATC
GATTTATTGAATTATATTTCAAGTAAACCCGTGGAAGAAGTGGGATATGG
GGGTGTCTGA

Synonyms

Publications