jgi.p|Nanoce1779_2|534288, mRNA_10695 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|534288
Unique Name	mRNA_10695
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1677
Alignment location	scaffold_76:64410..66086 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	534374
Track	FilteredModels2
ProteinId	534288

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_76	supercontig	scaffold_76:64410..66086 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|534288	gene_10695	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|534288	mRNA_10695-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10695	CDS_10695	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_76:64410..66086+
coding sequence from alignment at scaffold_76:64410..66086+

mRNA sequence

>mRNA_10695 ID=mRNA_10695|Name=jgi.p|Nanoce1779_2|534288|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp
ATGAACCGGTACAGCCGCACGATCACGCAGCCAAAGAGCCAGGGAGCGTC
GCAGGCCATGCTTTACGCCACGGGGCTGGAGCCTGAGGACATGAACAAGG
CGCAGGTAGGGATTTCGAGCATGTGGTTCGAGGGCAACCCGTGCAACATG
CATTTGCTGGACTTGGCCGCACATGTCAAGAAGGGCGTGGAGGCCTCAGG
GATGGTGGGCTACCGTTTCAATACTATTGGTGTGAGTGATGGAATCAGCA
TGGGCACGTCGGGCATGTCCTTTTCGTTGCAATCCCGCGATGTTATTGCG
GATTCCATTGAGACACTGATGAGCGCCCAATGGTATGACGGAAACATTGC
CCTGCCCGGGTGCGATAAAAATATGCCGGGTTGTCTCATTGCAATGGGTC
GATTGAACCGTCCTGCTTTGATGGTGTACGGAGGAACGATCCGGGCTGGT
TGCTCCCCAGGACATGAGCAGCTGGATATCGTCTCGGCTTTTCAGGCGTA
TGGTGAATTCCAATATGACCGCATTGACGAGAAGGAACGCTCAGAGATCA
TCCAGAATGCTTGCCCGGGCCCCGGAGCATGTGGAGGGATGTATACAGCT
AATACGATGGCAACTGCGGCTGAAGCGCTGGGTATGACCTTGCCTTACTC
GTCCTCTACCCCCGCGGACGATCCTCTCAAGTTGCAGGAATGCGAGCGGG
CAGGGGTGGCGATTCGGAATTTGCTGGAAAATGATATCAAGCCTAGGGAT
ATCATGACGCGAAAGGCGTTCGAGAACGCAATGGTAACGGTCATGGCTTT
GGGGGGGTCTACTAACGCGGTGCTCCACCTCATCGCCATGGCGCGGAGTG
TGGGTGTGCCGCTGACCCTAGACGACTTCCAAGCCTGCTCTGACCGTGTC
CCCTTCATTGCCGATCTCAAACCCAGCGGAAAATATGTAATGGAGGACGT
GCAGAAGATCGGAGGCACCCCAGCAGTCATGAAGTACTTGATGGATAAGG
GGTATATTGACGGGTCGTGCATGACGGTCACGGGCAAGACCATCGCTGAA
AACCTAAAGGATCTACCTGGCCTGAGCCCCGGACAAGAGATCATTCTGCC
GGTTGAGGCTCCTATCAAGGCCACGGGCCACTTGCAGATTTTGTACGGGA
ATCTGGCGCCGGAGGGGAGTGTGGCCAAGATCACAGGGAAGGAGGGAGAG
AGGTTTTCAGGGGTGGCGGCTGTTTATGACTCCGAGGAGGATATGCTGGC
GGCTTTGGAACGAAAGGAGATCAAGGCCGGGATGGTGATTGTGATTAGAT
ATGAGGGGCCCAAGGGAGGACCCGGGATGCCTGAGATGCTGACGCCGACG
AGTGCGATTATGGGGGCGGGGTTGGGGAAGGACGTGGCCTTGATAACCGA
TGGGCGGTTCTCCGGGGGTTCGCACGGGTTTGTGATCGGGCATGTCAGCC
CGGAGGCGCAAGAAGGGGGGCCGATAGCGTTGGTTCAAAATGGGGACCCT
ATTGTGATTGATGCTTCGAAGGAGACAAGGCGGATGGATATCTTGATTTC
GGAGGAGGAGATGGCCAAGAGGCAGGCGGCTTGGCAGCGACGACCGTACC
CGGCCACCCGTGGTACGCTCTATAAGTATATTAAGAATGTGGCCTCGGCC
TCAGAGGGGTGTGTGACGGATGAGTGA

protein sequence of jgi.p|Nanoce1779_2|534288

>mRNA_10695-protein ID=mRNA_10695-protein|Name=jgi.p|Nanoce1779_2|534288|organism=Nannochloropsis oceanica|type=polypeptide|length=559bp
MNRYSRTITQPKSQGASQAMLYATGLEPEDMNKAQVGISSMWFEGNPCNM
HLLDLAAHVKKGVEASGMVGYRFNTIGVSDGISMGTSGMSFSLQSRDVIA
DSIETLMSAQWYDGNIALPGCDKNMPGCLIAMGRLNRPALMVYGGTIRAG
CSPGHEQLDIVSAFQAYGEFQYDRIDEKERSEIIQNACPGPGACGGMYTA
NTMATAAEALGMTLPYSSSTPADDPLKLQECERAGVAIRNLLENDIKPRD
IMTRKAFENAMVTVMALGGSTNAVLHLIAMARSVGVPLTLDDFQACSDRV
PFIADLKPSGKYVMEDVQKIGGTPAVMKYLMDKGYIDGSCMTVTGKTIAE
NLKDLPGLSPGQEIILPVEAPIKATGHLQILYGNLAPEGSVAKITGKEGE
RFSGVAAVYDSEEDMLAALERKEIKAGMVIVIRYEGPKGGPGMPEMLTPT
SAIMGAGLGKDVALITDGRFSGGSHGFVIGHVSPEAQEGGPIALVQNGDP
IVIDASKETRRMDILISEEEMAKRQAAWQRRPYPATRGTLYKYIKNVASA
SEGCVTDE*

mRNA from alignment at scaffold_76:64410..66086+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10695 ID=mRNA_10695|Name=jgi.p|Nanoce1779_2|534288|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp|location=Sequence derived from alignment at scaffold_76:64410..66086+ (Nannochloropsis oceanica)
ATGAACCGGTACAGCCGCACGATCACGCAGCCAAAGAGCCAGGGAGCGTC
GCAGGCCATGCTTTACGCCACGGGGCTGGAGCCTGAGGACATGAACAAGG
CGCAGGTAGGGATTTCGAGCATGTGGTTCGAGGGCAACCCGTGCAACATG
CATTTGCTGGACTTGGCCGCACATGTCAAGAAGGGCGTGGAGGCCTCAGG
GATGGTGGGCTACCGTTTCAATACTATTGGTGTGAGTGATGGAATCAGCA
TGGGCACGTCGGGCATGTCCTTTTCGTTGCAATCCCGCGATGTTATTGCG
GATTCCATTGAGACACTGATGAGCGCCCAATGGTATGACGGAAACATTGC
CCTGCCCGGGTGCGATAAAAATATGCCGGGTTGTCTCATTGCAATGGGTC
GATTGAACCGTCCTGCTTTGATGGTGTACGGAGGAACGATCCGGGCTGGT
TGCTCCCCAGGACATGAGCAGCTGGATATCGTCTCGGCTTTTCAGGCGTA
TGGTGAATTCCAATATGACCGCATTGACGAGAAGGAACGCTCAGAGATCA
TCCAGAATGCTTGCCCGGGCCCCGGAGCATGTGGAGGGATGTATACAGCT
AATACGATGGCAACTGCGGCTGAAGCGCTGGGTATGACCTTGCCTTACTC
GTCCTCTACCCCCGCGGACGATCCTCTCAAGTTGCAGGAATGCGAGCGGG
CAGGGGTGGCGATTCGGAATTTGCTGGAAAATGATATCAAGCCTAGGGAT
ATCATGACGCGAAAGGCGTTCGAGAACGCAATGGTAACGGTCATGGCTTT
GGGGGGGTCTACTAACGCGGTGCTCCACCTCATCGCCATGGCGCGGAGTG
TGGGTGTGCCGCTGACCCTAGACGACTTCCAAGCCTGCTCTGACCGTGTC
CCCTTCATTGCCGATCTCAAACCCAGCGGAAAATATGTAATGGAGGACGT
GCAGAAGATCGGAGGCACCCCAGCAGTCATGAAGTACTTGATGGATAAGG
GGTATATTGACGGGTCGTGCATGACGGTCACGGGCAAGACCATCGCTGAA
AACCTAAAGGATCTACCTGGCCTGAGCCCCGGACAAGAGATCATTCTGCC
GGTTGAGGCTCCTATCAAGGCCACGGGCCACTTGCAGATTTTGTACGGGA
ATCTGGCGCCGGAGGGGAGTGTGGCCAAGATCACAGGGAAGGAGGGAGAG
AGGTTTTCAGGGGTGGCGGCTGTTTATGACTCCGAGGAGGATATGCTGGC
GGCTTTGGAACGAAAGGAGATCAAGGCCGGGATGGTGATTGTGATTAGAT
ATGAGGGGCCCAAGGGAGGACCCGGGATGCCTGAGATGCTGACGCCGACG
AGTGCGATTATGGGGGCGGGGTTGGGGAAGGACGTGGCCTTGATAACCGA
TGGGCGGTTCTCCGGGGGTTCGCACGGGTTTGTGATCGGGCATGTCAGCC
CGGAGGCGCAAGAAGGGGGGCCGATAGCGTTGGTTCAAAATGGGGACCCT
ATTGTGATTGATGCTTCGAAGGAGACAAGGCGGATGGATATCTTGATTTC
GGAGGAGGAGATGGCCAAGAGGCAGGCGGCTTGGCAGCGACGACCGTACC
CGGCCACCCGTGGTACGCTCTATAAGTATATTAAGAATGTGGCCTCGGCC
TCAGAGGGGTGTGTGACGGATGAGTGA

Coding sequence (CDS) from alignment at scaffold_76:64410..66086+

>mRNA_10695 ID=mRNA_10695|Name=jgi.p|Nanoce1779_2|534288|organism=Nannochloropsis oceanica|type=CDS|length=1677bp|location=Sequence derived from alignment at scaffold_76:64410..66086+ (Nannochloropsis oceanica)
ATGAACCGGTACAGCCGCACGATCACGCAGCCAAAGAGCCAGGGAGCGTC
GCAGGCCATGCTTTACGCCACGGGGCTGGAGCCTGAGGACATGAACAAGG
CGCAGGTAGGGATTTCGAGCATGTGGTTCGAGGGCAACCCGTGCAACATG
CATTTGCTGGACTTGGCCGCACATGTCAAGAAGGGCGTGGAGGCCTCAGG
GATGGTGGGCTACCGTTTCAATACTATTGGTGTGAGTGATGGAATCAGCA
TGGGCACGTCGGGCATGTCCTTTTCGTTGCAATCCCGCGATGTTATTGCG
GATTCCATTGAGACACTGATGAGCGCCCAATGGTATGACGGAAACATTGC
CCTGCCCGGGTGCGATAAAAATATGCCGGGTTGTCTCATTGCAATGGGTC
GATTGAACCGTCCTGCTTTGATGGTGTACGGAGGAACGATCCGGGCTGGT
TGCTCCCCAGGACATGAGCAGCTGGATATCGTCTCGGCTTTTCAGGCGTA
TGGTGAATTCCAATATGACCGCATTGACGAGAAGGAACGCTCAGAGATCA
TCCAGAATGCTTGCCCGGGCCCCGGAGCATGTGGAGGGATGTATACAGCT
AATACGATGGCAACTGCGGCTGAAGCGCTGGGTATGACCTTGCCTTACTC
GTCCTCTACCCCCGCGGACGATCCTCTCAAGTTGCAGGAATGCGAGCGGG
CAGGGGTGGCGATTCGGAATTTGCTGGAAAATGATATCAAGCCTAGGGAT
ATCATGACGCGAAAGGCGTTCGAGAACGCAATGGTAACGGTCATGGCTTT
GGGGGGGTCTACTAACGCGGTGCTCCACCTCATCGCCATGGCGCGGAGTG
TGGGTGTGCCGCTGACCCTAGACGACTTCCAAGCCTGCTCTGACCGTGTC
CCCTTCATTGCCGATCTCAAACCCAGCGGAAAATATGTAATGGAGGACGT
GCAGAAGATCGGAGGCACCCCAGCAGTCATGAAGTACTTGATGGATAAGG
GGTATATTGACGGGTCGTGCATGACGGTCACGGGCAAGACCATCGCTGAA
AACCTAAAGGATCTACCTGGCCTGAGCCCCGGACAAGAGATCATTCTGCC
GGTTGAGGCTCCTATCAAGGCCACGGGCCACTTGCAGATTTTGTACGGGA
ATCTGGCGCCGGAGGGGAGTGTGGCCAAGATCACAGGGAAGGAGGGAGAG
AGGTTTTCAGGGGTGGCGGCTGTTTATGACTCCGAGGAGGATATGCTGGC
GGCTTTGGAACGAAAGGAGATCAAGGCCGGGATGGTGATTGTGATTAGAT
ATGAGGGGCCCAAGGGAGGACCCGGGATGCCTGAGATGCTGACGCCGACG
AGTGCGATTATGGGGGCGGGGTTGGGGAAGGACGTGGCCTTGATAACCGA
TGGGCGGTTCTCCGGGGGTTCGCACGGGTTTGTGATCGGGCATGTCAGCC
CGGAGGCGCAAGAAGGGGGGCCGATAGCGTTGGTTCAAAATGGGGACCCT
ATTGTGATTGATGCTTCGAAGGAGACAAGGCGGATGGATATCTTGATTTC
GGAGGAGGAGATGGCCAAGAGGCAGGCGGCTTGGCAGCGACGACCGTACC
CGGCCACCCGTGGTACGCTCTATAAGTATATTAAGAATGTGGCCTCGGCC
TCAGAGGGGTGTGTGACGGATGAGTGA

Synonyms

Publications