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Properties
| Property Name | Value |
|---|
| TranscriptId | 534353 |
| Track | FilteredModels2 |
| ProteinId | 534267 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:17127..18977 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10677 ID=mRNA_10677|Name=jgi.p|Nanoce1779_2|534267|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp
ATGATGCAAAGGCGGAGGGGGGCTTTAGCGAGGAGCGAAGACCCAGGTGG
GCTGGTGAGGTCATTGCTTGGGATGAGTGTGGCGCAGCAGCCATCAATGT
GGGAGTGGGTCAGAGCTGGGACACTGCCAACGCTGGTGGTGTATGGTGTG
AATGATCAGAAATATTCAGGGTTGGCGGAGGAATTGAGGGGTGGATTGTT
GGGGGATGGAGGGAGGGAAGGAGGTAGGGAGGGACTTGGGGGTGGTGGCA
TGGGGAGAGTGGTGGAGGTGAAAGGTATTAATGATTCGGGGCATGCGGTT
TTGGTAGAGAAGGAGGGAGAGATGCTGAGGGAGACGACGGCGTTTCTCAG
GAGGCATTTCGAGGATCCTCAGGGAGGGGAGAGAGTGAAGGGCACGGGCA
CTGGAGGAGGAGGAGGAGGGGGTAAGACAAAAGGAGGAGCTTCGGTGTCC
GTGGTATCTTTGGCGGTTGCCTCTTCGTCGTCATCGTTGCAGCAGCAGCA
TGTGTTGCGGGTGGCGAGCTTGAGATGGACGGCTTTTGCCCTACCGCTGA
AGAAGCCCTTGGTATTATCTTCTGGGCCTCCGTTGACGCATCGTCGGGGA
CTGCTGCTGGCATTGGAGGCAGATTCGGGGGTGATAGGAGTGGGGGAGGT
TAATCCTCTACCGGGGTTCAGTAAGGAGACCCTCCCTCAGGCTGAACGAC
AGTTGAAGGCATTAGCTTCATCTTTGCGTGGACGGGCCTTGCCGAAGGTG
GGGGGAAGCAGGGGATTGGCGGCGTGGATGGAGTGGTTGCAGCAGCAGGG
ACAAGGGGATGGGTTATTGCCGTCGGTGAGGGCGGGTGTGGAGATGGCGC
TGGTCCATGTGTTGGCACAAGAGTACAGAGTGGGCCTGCCTGCAGTATTA
ACGGCAGGAAATCCTTTTCATCTCTTGCATACTGGCCAGGTATTCATGAA
CGGTTTGGTGTTACGCAGCAGCAGCAGTTTTAACAGCAGTGGTGGTGGTA
GTCGCAAGGTCAAGGTGGGTGGCAGACCCGTCTCGGAGGACATCGAGCGA
GTCGACATAATGACAGCGGCACTCGCCTCTGGGCATCGATTGCGCCTGGA
TGCTAACCGATCGTGGTCTCTTGAAGAAGCTACCGCCTTCATTCGCGGGC
TGGCTCAACCGGAGCGGGTAGAATACCTGGAAGAGCCGTGCCGGGACCCC
TTGATCATTCCCGAGCTCTACCACCTGACTGAGCAACGAATCAAATTTGC
CTTAGATGAAACCCTGGCCTCTCCTCCTCGTCCTTTGTCCGACTTGGTGG
GTTTGGCGGGACTGGTGGCCTTGGTGCTCAAGCCGACGGTGTTGGGGGGG
TTGAAGGTGTGTTTGGATTTGCATGCATTAGGGAGTGCCAAGGGTCTGCT
GAGCGTGGTGAGTTCATCCTTTGAGTCCAGCGTCGGTCTCGCACATTTGA
CGGTTCTAGCTTCGGTGCTCAATTCGGGTGTGGGCACTTCAAGACAGAAT
AAGACCGGCGGGGTTCACACATTGCATGGGTTGTCGACGTATGATGTGTT
TGCACGGGAGGAGGGGGAGGAGGAGGAAGAGGGAAGGGAGATTGGGCGGG
ATGGTTATGGTCGGTTGGTCATTTGTGGGAGTCGAAGCATGCTGGTGGAT
GTGCTAGGCTGCAATGAGTTTTTGGATGGGTGCATGAAAAAGATGAAGCA
CGATGGTCGGTGGTGTGATGATAGGAGAAGTGTGGGGAAGGAGGAGGAGA
ACGCAGCACCTGAGCGGGCGGGTCGTGAGATCAGCAACGGGAAACGAAAT
GACCCCCCTTGA back to topprotein sequence of jgi.p|Nanoce1779_2|534267 >mRNA_10677-protein ID=mRNA_10677-protein|Name=jgi.p|Nanoce1779_2|534267|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MMQRRRGALARSEDPGGLVRSLLGMSVAQQPSMWEWVRAGTLPTLVVYGV
NDQKYSGLAEELRGGLLGDGGREGGREGLGGGGMGRVVEVKGINDSGHAV
LVEKEGEMLRETTAFLRRHFEDPQGGERVKGTGTGGGGGGGKTKGGASVS
VVSLAVASSSSSLQQQHVLRVASLRWTAFALPLKKPLVLSSGPPLTHRRG
LLLALEADSGVIGVGEVNPLPGFSKETLPQAERQLKALASSLRGRALPKV
GGSRGLAAWMEWLQQQGQGDGLLPSVRAGVEMALVHVLAQEYRVGLPAVL
TAGNPFHLLHTGQVFMNGLVLRSSSSFNSSGGGSRKVKVGGRPVSEDIER
VDIMTAALASGHRLRLDANRSWSLEEATAFIRGLAQPERVEYLEEPCRDP
LIIPELYHLTEQRIKFALDETLASPPRPLSDLVGLAGLVALVLKPTVLGG
LKVCLDLHALGSAKGLLSVVSSSFESSVGLAHLTVLASVLNSGVGTSRQN
KTGGVHTLHGLSTYDVFAREEGEEEEEGREIGRDGYGRLVICGSRSMLVD
VLGCNEFLDGCMKKMKHDGRWCDDRRSVGKEEENAAPERAGREISNGKRN
DPP* back to topmRNA from alignment at scaffold_76:17127..18977- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10677 ID=mRNA_10677|Name=jgi.p|Nanoce1779_2|534267|organism=Nannochloropsis oceanica|type=mRNA|length=1851bp|location=Sequence derived from alignment at scaffold_76:17127..18977- (Nannochloropsis oceanica)
ATGATGCAAAGGCGGAGGGGGGCTTTAGCGAGGAGCGAAGACCCAGGTGG
GCTGGTGAGGTCATTGCTTGGGATGAGTGTGGCGCAGCAGCCATCAATGT
GGGAGTGGGTCAGAGCTGGGACACTGCCAACGCTGGTGGTGTATGGTGTG
AATGATCAGAAATATTCAGGGTTGGCGGAGGAATTGAGGGGTGGATTGTT
GGGGGATGGAGGGAGGGAAGGAGGTAGGGAGGGACTTGGGGGTGGTGGCA
TGGGGAGAGTGGTGGAGGTGAAAGGTATTAATGATTCGGGGCATGCGGTT
TTGGTAGAGAAGGAGGGAGAGATGCTGAGGGAGACGACGGCGTTTCTCAG
GAGGCATTTCGAGGATCCTCAGGGAGGGGAGAGAGTGAAGGGCACGGGCA
CTGGAGGAGGAGGAGGAGGGGGTAAGACAAAAGGAGGAGCTTCGGTGTCC
GTGGTATCTTTGGCGGTTGCCTCTTCGTCGTCATCGTTGCAGCAGCAGCA
TGTGTTGCGGGTGGCGAGCTTGAGATGGACGGCTTTTGCCCTACCGCTGA
AGAAGCCCTTGGTATTATCTTCTGGGCCTCCGTTGACGCATCGTCGGGGA
CTGCTGCTGGCATTGGAGGCAGATTCGGGGGTGATAGGAGTGGGGGAGGT
TAATCCTCTACCGGGGTTCAGTAAGGAGACCCTCCCTCAGGCTGAACGAC
AGTTGAAGGCATTAGCTTCATCTTTGCGTGGACGGGCCTTGCCGAAGGTG
GGGGGAAGCAGGGGATTGGCGGCGTGGATGGAGTGGTTGCAGCAGCAGGG
ACAAGTACAGCAGCAGCAGCAGCAGGGCGGAAATGACCGGAAGGGGGATG
GGTTATTGCCGTCGGTGAGGGCGGGTGTGGAGATGGCGCTGGTCCATGTG
TTGGCACAAGAGTACAGAGTGGGCCTGCCTGCAGTATTAACGGCAGGAAA
TCCTTTTCATCTCTTGCATACTGGCCAGGTATTCATGAACGGTTTGGTGT
TACGCAGCAGCAGCAGTTTTAACAGCAGTGGTGGTGGTAGTCGCAAGGTC
AAGGTGGGTGGCAGACCCGTCTCGGAGGACATCGAGCGAGTCGACATAAT
GACAGCGGCACTCGCCTCTGGGCATCGATTGCGCCTGGATGCTAACCGAT
CGTGGTCTCTTGAAGAAGCTACCGCCTTCATTCGCGGGCTGGCTCAACCG
GAGCGGGTAGAATACCTGGAAGAGCCGTGCCGGGACCCCTTGATCATTCC
CGAGCTCTACCACCTGACTGAGCAACGAATCAAATTTGCCTTAGATGAAA
CCCTGGCCTCTCCTCCTCGTCCTTTGTCCGACTTGGTGGGTTTGGCGGGA
CTGGTGGCCTTGGTGCTCAAGCCGACGGTGTTGGGGGGGTTGAAGGTGTG
TTTGGATTTGCATGCATTAGGGAGTGCCAAGGGTCTGCTGAGCGTGGTGA
GTTCATCCTTTGAGTCCAGCGTCGGTCTCGCACATTTGACGGTTCTAGCT
TCGGTGCTCAATTCGGGTGTGGGCACTTCAAGACAGAATAAGACCGGCGG
GGTTCACACATTGCATGGGTTGTCGACGTATGATGTGTTTGCACGGGAGG
AGGGGGAGGAGGAGGAAGAGGGAAGGGAGATTGGGCGGGATGGTTATGGT
CGGTTGGTCATTTGTGGGAGTCGAAGCATGCTGGTGGATGTGCTAGGCTG
CAATGAGTTTTTGGATGGGTGCATGAAAAAGATGAAGCACGATGGTCGGT
GGTGTGATGATAGGAGAAGTGTGGGGAAGGAGGAGGAGAACGCAGCACCT
GAGCGGGCGGGTCGTGAGATCAGCAACGGGAAACGAAATGACCCCCCTTG
A back to topCoding sequence (CDS) from alignment at scaffold_76:17127..18977- >mRNA_10677 ID=mRNA_10677|Name=jgi.p|Nanoce1779_2|534267|organism=Nannochloropsis oceanica|type=CDS|length=3624bp|location=Sequence derived from alignment at scaffold_76:17127..18977- (Nannochloropsis oceanica)
GGGGATGGGTTATTGCCGTCGGTGAGGGCGGGTGTGGAGATGGCGCTGGT
CCATGTGTTGGCACAAGAGTACAGAGTGGGCCTGCCTGCAGTATTAACGG
CAGGAAATCCTTTTCATCTCTTGCATACTGGCCAGGTATTCATGAACGGT
TTGGTGTTACGCAGCAGCAGCAGTTTTAACAGCAGTGGTGGTGGTAGTCG
CAAGGTCAAGGTGGGTGGCAGACCCGTCTCGGAGGACATCGAGCGAGTCG
ACATAATGACAGCGGCACTCGCCTCTGGGCATCGATTGCGCCTGGATGCT
AACCGATCGTGGTCTCTTGAAGAAGCTACCGCCTTCATTCGCGGGCTGGC
TCAACCGGAGCGGGTAGAATACCTGGAAGAGCCGTGCCGGGACCCCTTGA
TCATTCCCGAGCTCTACCACCTGACTGAGCAACGAATCAAATTTGCCTTA
GATGAAACCCTGGCCTCTCCTCCTCGTCCTTTGTCCGACTTGGTGGGTTT
GGCGGGACTGGTGGCCTTGGTGCTCAAGCCGACGGTGTTGGGGGGGTTGA
AGGTGTGTTTGGATTTGCATGCATTAGGGAGTGCCAAGGGTCTGCTGAGC
GTGGTGAGTTCATCCTTTGAGTCCAGCGTCGGTCTCGCACATTTGACGGT
TCTAGCTTCGGTGCTCAATTCGGGTGTGGGCACTTCAAGACAGAATAAGA
CCGGCGGGGTTCACACATTGCATGGGTTGTCGACGTATGATGTGTTTGCA
CGGGAGGAGGGGGAGGAGGAGGAAGAGGGAAGGGAGATTGGGCGGGATGG
TTATGGTCGGTTGGTCATTTGTGGGAGTCGAAGCATGCTGGTGGATGTGC
TAGGCTGCAATGAGTTTTTGGATGGGTGCATGAAAAAGATGAAGCACGAT
GGTCGGTGGTGTGATGATAGGAGAAGTGTGGGGAAGGAGGAGGAGAACGC
AGCACCTGAGCGGGCGGGTCGTGAGATCAGCAACGGGAAACGAAATGACC
CCCCTTGAATGATGCAAAGGCGGAGGGGGGCTTTAGCGAGGAGCGAAGAC
CCAGGTGGGCTGGTGAGGTCATTGCTTGGGATGAGTGTGGCGCAGCAGCC
ATCAATGTGGGAGTGGGTCAGAGCTGGGACACTGCCAACGCTGGTGGTGT
ATGGTGTGAATGATCAGAAATATTCAGGGTTGGCGGAGGAATTGAGGGGT
GGATTGTTGGGGGATGGAGGGAGGGAAGGAGGTAGGGAGGGACTTGGGGG
TGGTGGCATGGGGAGAGTGGTGGAGGTGAAAGGTATTAATGATTCGGGGC
ATGCGGTTTTGGTAGAGAAGGAGGGAGAGATGCTGAGGGAGACGACGGCG
TTTCTCAGGAGGCATTTCGAGGATCCTCAGGGAGGGGAGAGAGTGAAGGG
CACGGGCACTGGAGGAGGAGGAGGAGGGGGTAAGACAAAAGGAGGAGCTT
CGGTGTCCGTGGTATCTTTGGCGGTTGCCTCTTCGTCGTCATCGTTGCAG
CAGCAGCATGTGTTGCGGGTGGCGAGCTTGAGATGGACGGCTTTTGCCCT
ACCGCTGAAGAAGCCCTTGGTATTATCTTCTGGGCCTCCGTTGACGCATC
GTCGGGGACTGCTGCTGGCATTGGAGGCAGATTCGGGGGTGATAGGAGTG
GGGGAGGTTAATCCTCTACCGGGGTTCAGTAAGGAGACCCTCCCTCAGGC
TGAACGACAGTTGAAGGCATTAGCTTCATCTTTGCGTGGACGGGCCTTGC
CGAAGGTGGGGGGAAGCAGGGGATTGGCGGCGTGGATGGAGTGGTTGCAG
CAGCAGGGACAAGGGGATGGGTTATTGCCGTCGGTGAGGGCGGGTGTGGA
GATGGCGCTGGTCCATGTGTTGGCACAAGAGTACAGAGTGGGCCTGCCTG
CAGTATTAACGGCAGGAAATCCTTTTCATCTCTTGCATACTGGCCAGGTA
TTCATGAACGGTTTGGTGTTACGCAGCAGCAGCAGTTTTAACAGCAGTGG
TGGTGGTAGTCGCAAGGTCAAGGTGGGTGGCAGACCCGTCTCGGAGGACA
TCGAGCGAGTCGACATAATGACAGCGGCACTCGCCTCTGGGCATCGATTG
CGCCTGGATGCTAACCGATCGTGGTCTCTTGAAGAAGCTACCGCCTTCAT
TCGCGGGCTGGCTCAACCGGAGCGGGTAGAATACCTGGAAGAGCCGTGCC
GGGACCCCTTGATCATTCCCGAGCTCTACCACCTGACTGAGCAACGAATC
AAATTTGCCTTAGATGAAACCCTGGCCTCTCCTCCTCGTCCTTTGTCCGA
CTTGGTGGGTTTGGCGGGACTGGTGGCCTTGGTGCTCAAGCCGACGGTGT
TGGGGGGGTTGAAGGTGTGTTTGGATTTGCATGCATTAGGGAGTGCCAAG
GGTCTGCTGAGCGTGGTGAGTTCATCCTTTGAGTCCAGCGTCGGTCTCGC
ACATTTGACGGTTCTAGCTTCGGTGCTCAATTCGGGTGTGGGCACTTCAA
GACAGAATAAGACCGGCGGGGTTCACACATTGCATGGGTTGTCGACGTAT
GATGTGTTTGCACGGGAGGAGGGGGAGGAGGAGGAAGAGGGAAGGGAGAT
TGGGCGGGATGGTTATGGTCGGTTGGTCATTTGTGGGAGTCGAAGCATGC
TGGTGGATGTGCTAGGCTGCAATGAGTTTTTGGATGGGTGCATGAAAAAG
ATGAAGCACGATGGTCGGTGGTGTGATGATAGGAGAAGTGTGGGGAAGGA
GGAGGAGAACGCAGCACCTGAGCGGGCGGGTCGTGAGATCAGCAACGGGA
AACGAAATGACCCCCCTTGAATGATGCAAAGGCGGAGGGGGGCTTTAGCG
AGGAGCGAAGACCCAGGTGGGCTGGTGAGGTCATTGCTTGGGATGAGTGT
GGCGCAGCAGCCATCAATGTGGGAGTGGGTCAGAGCTGGGACACTGCCAA
CGCTGGTGGTGTATGGTGTGAATGATCAGAAATATTCAGGGTTGGCGGAG
GAATTGAGGGGTGGATTGTTGGGGGATGGAGGGAGGGAAGGAGGTAGGGA
GGGACTTGGGGGTGGTGGCATGGGGAGAGTGGTGGAGGTGAAAGGTATTA
ATGATTCGGGGCATGCGGTTTTGGTAGAGAAGGAGGGAGAGATGCTGAGG
GAGACGACGGCGTTTCTCAGGAGGCATTTCGAGGATCCTCAGGGAGGGGA
GAGAGTGAAGGGCACGGGCACTGGAGGAGGAGGAGGAGGGGGTAAGACAA
AAGGAGGAGCTTCGGTGTCCGTGGTATCTTTGGCGGTTGCCTCTTCGTCG
TCATCGTTGCAGCAGCAGCATGTGTTGCGGGTGGCGAGCTTGAGATGGAC
GGCTTTTGCCCTACCGCTGAAGAAGCCCTTGGTATTATCTTCTGGGCCTC
CGTTGACGCATCGTCGGGGACTGCTGCTGGCATTGGAGGCAGATTCGGGG
GTGATAGGAGTGGGGGAGGTTAATCCTCTACCGGGGTTCAGTAAGGAGAC
CCTCCCTCAGGCTGAACGACAGTTGAAGGCATTAGCTTCATCTTTGCGTG
GACGGGCCTTGCCGAAGGTGGGGGGAAGCAGGGGATTGGCGGCGTGGATG
GAGTGGTTGCAGCAGCAGGGACAA back to top
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