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Properties
| Property Name | Value |
|---|
| TranscriptId | 613643 |
| Track | FilteredModels2 |
| ProteinId | 613557 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:11479..13710 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10674 ID=mRNA_10674|Name=jgi.p|Nanoce1779_2|613557|organism=Nannochloropsis oceanica|type=mRNA|length=2075bp
ACAGCGCTCCCACGCACAACGCAAAAGCCATGGTGGACGACGACGCCCCT
CCTTCGGGTCCCTCGACCACCAAGCAGTCTCCCCGGCCCTTGCAAATCAT
CCGTCTGGGTACTGCGGAAGAAAATTATTCCTTTCATCTCGAGCAAGCCA
ACCTGGACAACATCATGGCTCAAGTGCCCAAGCAAATGAAGGTTGCCGTC
GTCTCCGTCGTCGGGGCCTTTCGCACAGGTAAATCATTTTTGTTGACGTT
CTTGCTGCGGTATCTGCGGCATGGCTCGGACCTGGACGAGAGCGAGGACT
GGATGAAGGCCGCAGGCGACTTGCGGGAAGGGAACATTAACGAGAAGGTC
TTGGCGGGGGAGGCGGGGCGGAGCAATGTGGATTCGAGCTTTCAGTGGCG
CGCGGGTAAGGAGCGGACGACGACGGGAATTTGGATGTGGTCGGAGCCGT
TCGTCCGGCGTGTGGCAAATGGGGAGGACGTCGCCGTGTTGTTGATGGAC
ACCCAGGGGATGTTCGATAACGAGACGAGCATGAATCTGACAGCGTGTAT
TTTTGGGTTAAGTACCCTGTTGTCATCGTATCAGATTTATAATGTTCAGA
ACCGGATTCAGGAGGATAATTTGCAGCACTTGGCATTGTTTTCGGAGTAT
GGACGGATCGCTCTGGCGGGGGAAGCGGGAAAGCAGCTGCAGGAGGAGCA
ATCGACAAGTAGGAAGAGTTTGGAGAAGCAGCAGCAAAAGAAGAAGGGAG
ACGAGAAGGAAGACGAGGAGAAAGAGGGGAAGGGAGGGGAGGAGGATGGA
GAAGAAATGATGCTGCCGGACGATGACGAGATTCCCTTTCAACGTGTGGA
ATTTTTGGTGCGGGATTGGATGGACTTTGATGAGGAGCTGCCGTTTTACA
AGCTCAAGGAGGAAATGGATGCCTACCTCCAAGACGTGATCGACAAGGGC
TCCGTCAAAGACCTCCGCCAAACCCGCGAGCAAATCTTGAGTTGCTTCCA
GAAGGTTCGATGTTTCATTCTGCCTCACCCCGGGTTGGAAGTGCCCAAGC
GAGGGTACAGTGGAGAGGTGAGTCTGATTAACCCTTTCTTCCGCCAGCTC
CTCAATCACTATGCCCGGGAGGTGTTCGGCCCTGATTTGGAGCCCAAGCG
GATTCATAAGCGCGATCTGACGGCACCGGAGTTGAGGCAGTATGTTCTGT
CGTACGTCGAGATGTTCAAGAGCGGGACGCGTTTCCCCGAGGCCCAGACG
ATGCTCGAAGCCACCGCATCGGCGAACAATCAAAATGCGCTGCAATTAGC
GTTGAATAAATATAGGGGGGAGATGGATGCTTATTGCGGTCCGCGGACGT
ACGAGTATCGGAAGGTAGATCTGTTTTTAGCGCACCATCGGGCGTGCAAA
GACGCGGCTTTGCGTTTGTTTAACTCCACCGCAACCATTGGTAGGAAAGC
GCAAGTGAAGGAATTTAGGGGGAGGGTGTTGGGGGAGATAGAGGATTTGT
TTCTCCGGTACGAGGAGGCAAATGCCAATCGAAACCCCTTTCGGAATTTT
GAATACTACGCCTTGCCGCTGTTGGTGGCAGCTTTTGCGTTCATTCTGCG
GTGGGTTGCGGATTTGGAGAGCTCTTGTTCGTTGGAAAGAAGGTACTTGT
GTAGAAGTGTCTCCAATGCCATGGGGCATGTGTATGTGTTTTTGGTCACT
TTCGTGCTAATTTTGTCGTTCAATCGGGTGAAGATGTTCGTGGATTATGT
TCGGCAGATCATGCCTGTGTTGCTGGGGATGGATCGCAGTCATATGCATT
TGAAGACGGCGTAAGAGTGAAGGGAGGAGGGAGGTGGAGGGAGGCAGGTG
GTGTGTTGAGATCAGGCTAGCGGGGACAAGAATGGATATGAGTAGAGCAA
GGGAAGGAATGAGAAGAGTTCCTGGAAGAGTGAGAGGGAGGTGGGGGAGA
GAGAAAGGTAATTTAAGTGTGCAGAGGGGAGAGTAGAGAGAAAAAGAGGA
AAATGGCACGCATTCAGGCAGAAGACAATAGAACGAGAAATAAGTAAAGA
AGATACCTACAAACGACTATGTGTC back to topprotein sequence of jgi.p|Nanoce1779_2|613557 >mRNA_10674-protein ID=mRNA_10674-protein|Name=jgi.p|Nanoce1779_2|613557|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MVDDDAPPSGPSTTKQSPRPLQIIRLGTAEENYSFHLEQANLDNIMAQVP
KQMKVAVVSVVGAFRTGKSFLLTFLLRYLRHGSDLDESEDWMKAAGDLRE
GNINEKVLAGEAGRSNVDSSFQWRAGKERTTTGIWMWSEPFVRRVANGED
VAVLLMDTQGMFDNETSMNLTACIFGLSTLLSSYQIYNVQNRIQEDNLQH
LALFSEYGRIALAGEAGKQLQEEQSTSRKSLEKQQQKKKGDEKEDEEKEG
KGGEEDGEEMMLPDDDEIPFQRVEFLVRDWMDFDEELPFYKLKEEMDAYL
QDVIDKGSVKDLRQTREQILSCFQKVRCFILPHPGLEVPKRGYSGEVSLI
NPFFRQLLNHYAREVFGPDLEPKRIHKRDLTAPELRQYVLSYVEMFKSGT
RFPEAQTMLEATASANNQNALQLALNKYRGEMDAYCGPRTYEYRKVDLFL
AHHRACKDAALRLFNSTATIGRKAQVKEFRGRVLGEIEDLFLRYEEANAN
RNPFRNFEYYALPLLVAAFAFILRWVADLESSCSLERRYLCRSVSNAMGH
VYVFLVTFVLILSFNRVKMFVDYVRQIMPVLLGMDRSHMHLKTA* back to topmRNA from alignment at scaffold_76:11479..13710- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10674 ID=mRNA_10674|Name=jgi.p|Nanoce1779_2|613557|organism=Nannochloropsis oceanica|type=mRNA|length=2232bp|location=Sequence derived from alignment at scaffold_76:11479..13710- (Nannochloropsis oceanica)
ACAGCGCTCCCACGCACAACGCAAAAGCCATGGTGGACGACGACGCCCCT
CCTTCGGGTCCCTCGACCACCAAGCAGTCTCCCCGGCCCTTGCAAATCAT
CCGTCTGGGTACTGCGGAAGAAAATTATTCCTTTCATCTCGAGCAAGCCA
ACCTGGACAACATCATGGCTCAAGTGCCCAAGCAAATGAAGGTTGCCGTC
GTCTCCGTCGTCGGGGCCTTTCGCACAGGTAAATCATTTTTGTTGACGTT
CTTGCTGCGGTATCTGCGGCATGGCTCGGACCTGGACGAGAGCGAGGACT
GGATGAAGGCCGCAGGCGACTTGCGGGAAGGGAACATTAACGAGAAGGTC
TTGGCGGGGGAGGCGGGGCGGAGCAATGTGGATTCGAGCTTTCAGTGGCG
CGCGGGTAAGGAGCGGACGACGACGGGAATTTGGATGTGGTCGGAGCCGT
TCGTCCGGCGTGTGGCAAATGGGGAGGACGTCGCCGTGTTGTTGATGGAC
ACCCAGGGGATGTTCGATAACGAGACGAGCATGAATCTGACAGCGTGTAT
TTTTGGGTTAAGTACCCTGTTGTCATCGTATCAGATTTATAATGTTCAGA
ACCGGATTCAGGAGGATAATTTGCAGCACTTGGCATTGTTTTCGGAGTAT
GGACGGATCGCTCTGGCGGGGGAAGCGGGAAAGCAGCTGCAGGAGGAGCA
ATCGACAAGTAGGAAGAGTTTGGAGAAGCAGCAGCAAAAGAAGAAGGGAG
ACGAGAAGGAAGACGAGGAGAAAGAGGGGAAGGGAGGGGAGGAGGATGGA
GAAGAAATGATGCTGCCGGACGATGACGAGATTCCCTTTCAACGTGTGGA
ATTTTTGGTGCGGGATTGGATGGACTTTGATGAGGAGCTGCCGTTTTACA
AGCTCAAGGTATGTAGGTCCTGTCCTCCCGCCCTCTCTCCCACCCTCCAT
TCCATCCCTTTCTCATTACCAAAATTTCTTGATTTTCTGTCATGAGAGTC
CATGTCTTCTTTTCCTTCCCTCCCTCCCTCTCCTCCCTACCCTCCCTCAC
CTCCCTCCTTTTCAGGAGGAAATGGATGCCTACCTCCAAGACGTGATCGA
CAAGGGCTCCGTCAAAGACCTCCGCCAAACCCGCGAGCAAATCTTGAGTT
GCTTCCAGAAGGTTCGATGTTTCATTCTGCCTCACCCCGGGTTGGAAGTG
CCCAAGCGAGGGTACAGTGGAGAGGTGAGTCTGATTAACCCTTTCTTCCG
CCAGCTCCTCAATCACTATGCCCGGGAGGTGTTCGGCCCTGATTTGGAGC
CCAAGCGGATTCATAAGCGCGATCTGACGGCACCGGAGTTGAGGCAGTAT
GTTCTGTCGTACGTCGAGATGTTCAAGAGCGGGACGCGTTTCCCCGAGGC
CCAGACGATGCTCGAAGCCACCGCATCGGCGAACAATCAAAATGCGCTGC
AATTAGCGTTGAATAAATATAGGGGGGAGATGGATGCTTATTGCGGTCCG
CGGACGTACGAGTATCGGAAGGTAGATCTGTTTTTAGCGCACCATCGGGC
GTGCAAAGACGCGGCTTTGCGTTTGTTTAACTCCACCGCAACCATTGGTA
GGAAAGCGCAAGTGAAGGAATTTAGGGGGAGGGTGTTGGGGGAGATAGAG
GATTTGTTTCTCCGGTACGAGGAGGCAAATGCCAATCGAAACCCCTTTCG
GAATTTTGAATACTACGCCTTGCCGCTGTTGGTGGCAGCTTTTGCGTTCA
TTCTGCGGTGGGTTGCGGATTTGGAGAGCTCTTGTTCGTTGGAAAGAAGG
TACTTGTGTAGAAGTGTCTCCAATGCCATGGGGCATGTGTATGTGTTTTT
GGTCACTTTCGTGCTAATTTTGTCGTTCAATCGGGTGAAGATGTTCGTGG
ATTATGTTCGGCAGATCATGCCTGTGTTGCTGGGGATGGATCGCAGTCAT
ATGCATTTGAAGACGGCGTAAGAGTGAAGGGAGGAGGGAGGTGGAGGGAG
GCAGGTGGTGTGTTGAGATCAGGCTAGCGGGGACAAGAATGGATATGAGT
AGAGCAAGGGAAGGAATGAGAAGAGTTCCTGGAAGAGTGAGAGGGAGGTG
GGGGAGAGAGAAAGGTAATTTAAGTGTGCAGAGGGGAGAGTAGAGAGAAA
AAGAGGAAAATGGCACGCATTCAGGCAGAAGACAATAGAACGAGAAATAA
GTAAAGAAGATACCTACAAACGACTATGTGTC back to topCoding sequence (CDS) from alignment at scaffold_76:11479..13710- >mRNA_10674 ID=mRNA_10674|Name=jgi.p|Nanoce1779_2|613557|organism=Nannochloropsis oceanica|type=CDS|length=3570bp|location=Sequence derived from alignment at scaffold_76:11479..13710- (Nannochloropsis oceanica)
GAGGAAATGGATGCCTACCTCCAAGACGTGATCGACAAGGGCTCCGTCAA
AGACCTCCGCCAAACCCGCGAGCAAATCTTGAGTTGCTTCCAGAAGGTTC
GATGTTTCATTCTGCCTCACCCCGGGTTGGAAGTGCCCAAGCGAGGGTAC
AGTGGAGAGGTGAGTCTGATTAACCCTTTCTTCCGCCAGCTCCTCAATCA
CTATGCCCGGGAGGTGTTCGGCCCTGATTTGGAGCCCAAGCGGATTCATA
AGCGCGATCTGACGGCACCGGAGTTGAGGCAGTATGTTCTGTCGTACGTC
GAGATGTTCAAGAGCGGGACGCGTTTCCCCGAGGCCCAGACGATGCTCGA
AGCCACCGCATCGGCGAACAATCAAAATGCGCTGCAATTAGCGTTGAATA
AATATAGGGGGGAGATGGATGCTTATTGCGGTCCGCGGACGTACGAGTAT
CGGAAGGTAGATCTGTTTTTAGCGCACCATCGGGCGTGCAAAGACGCGGC
TTTGCGTTTGTTTAACTCCACCGCAACCATTGGTAGGAAAGCGCAAGTGA
AGGAATTTAGGGGGAGGGTGTTGGGGGAGATAGAGGATTTGTTTCTCCGG
TACGAGGAGGCAAATGCCAATCGAAACCCCTTTCGGAATTTTGAATACTA
CGCCTTGCCGCTGTTGGTGGCAGCTTTTGCGTTCATTCTGCGGTGGGTTG
CGGATTTGGAGAGCTCTTGTTCGTTGGAAAGAAGGTACTTGTGTAGAAGT
GTCTCCAATGCCATGGGGCATGTGTATGTGTTTTTGGTCACTTTCGTGCT
AATTTTGTCGTTCAATCGGGTGAAGATGTTCGTGGATTATGTTCGGCAGA
TCATGCCTGTGTTGCTGGGGATGGATCGCAGTCATATGCATTTGAAGACG
GCGTAAATGGTGGACGACGACGCCCCTCCTTCGGGTCCCTCGACCACCAA
GCAGTCTCCCCGGCCCTTGCAAATCATCCGTCTGGGTACTGCGGAAGAAA
ATTATTCCTTTCATCTCGAGCAAGCCAACCTGGACAACATCATGGCTCAA
GTGCCCAAGCAAATGAAGGTTGCCGTCGTCTCCGTCGTCGGGGCCTTTCG
CACAGGTAAATCATTTTTGTTGACGTTCTTGCTGCGGTATCTGCGGCATG
GCTCGGACCTGGACGAGAGCGAGGACTGGATGAAGGCCGCAGGCGACTTG
CGGGAAGGGAACATTAACGAGAAGGTCTTGGCGGGGGAGGCGGGGCGGAG
CAATGTGGATTCGAGCTTTCAGTGGCGCGCGGGTAAGGAGCGGACGACGA
CGGGAATTTGGATGTGGTCGGAGCCGTTCGTCCGGCGTGTGGCAAATGGG
GAGGACGTCGCCGTGTTGTTGATGGACACCCAGGGGATGTTCGATAACGA
GACGAGCATGAATCTGACAGCGTGTATTTTTGGGTTAAGTACCCTGTTGT
CATCGTATCAGATTTATAATGTTCAGAACCGGATTCAGGAGGATAATTTG
CAGCACTTGGCATTGTTTTCGGAGTATGGACGGATCGCTCTGGCGGGGGA
AGCGGGAAAGCAGCTGCAGGAGGAGCAATCGACAAGTAGGAAGAGTTTGG
AGAAGCAGCAGCAAAAGAAGAAGGGAGACGAGAAGGAAGACGAGGAGAAA
GAGGGGAAGGGAGGGGAGGAGGATGGAGAAGAAATGATGCTGCCGGACGA
TGACGAGATTCCCTTTCAACGTGTGGAATTTTTGGTGCGGGATTGGATGG
ACTTTGATGAGGAGCTGCCGTTTTACAAGCTCAAGGAGGAAATGGATGCC
TACCTCCAAGACGTGATCGACAAGGGCTCCGTCAAAGACCTCCGCCAAAC
CCGCGAGCAAATCTTGAGTTGCTTCCAGAAGGTTCGATGTTTCATTCTGC
CTCACCCCGGGTTGGAAGTGCCCAAGCGAGGGTACAGTGGAGAGGTGAGT
CTGATTAACCCTTTCTTCCGCCAGCTCCTCAATCACTATGCCCGGGAGGT
GTTCGGCCCTGATTTGGAGCCCAAGCGGATTCATAAGCGCGATCTGACGG
CACCGGAGTTGAGGCAGTATGTTCTGTCGTACGTCGAGATGTTCAAGAGC
GGGACGCGTTTCCCCGAGGCCCAGACGATGCTCGAAGCCACCGCATCGGC
GAACAATCAAAATGCGCTGCAATTAGCGTTGAATAAATATAGGGGGGAGA
TGGATGCTTATTGCGGTCCGCGGACGTACGAGTATCGGAAGGTAGATCTG
TTTTTAGCGCACCATCGGGCGTGCAAAGACGCGGCTTTGCGTTTGTTTAA
CTCCACCGCAACCATTGGTAGGAAAGCGCAAGTGAAGGAATTTAGGGGGA
GGGTGTTGGGGGAGATAGAGGATTTGTTTCTCCGGTACGAGGAGGCAAAT
GCCAATCGAAACCCCTTTCGGAATTTTGAATACTACGCCTTGCCGCTGTT
GGTGGCAGCTTTTGCGTTCATTCTGCGGTGGGTTGCGGATTTGGAGAGCT
CTTGTTCGTTGGAAAGAAGGTACTTGTGTAGAAGTGTCTCCAATGCCATG
GGGCATGTGTATGTGTTTTTGGTCACTTTCGTGCTAATTTTGTCGTTCAA
TCGGGTGAAGATGTTCGTGGATTATGTTCGGCAGATCATGCCTGTGTTGC
TGGGGATGGATCGCAGTCATATGCATTTGAAGACGGCGTAAATGGTGGAC
GACGACGCCCCTCCTTCGGGTCCCTCGACCACCAAGCAGTCTCCCCGGCC
CTTGCAAATCATCCGTCTGGGTACTGCGGAAGAAAATTATTCCTTTCATC
TCGAGCAAGCCAACCTGGACAACATCATGGCTCAAGTGCCCAAGCAAATG
AAGGTTGCCGTCGTCTCCGTCGTCGGGGCCTTTCGCACAGGTAAATCATT
TTTGTTGACGTTCTTGCTGCGGTATCTGCGGCATGGCTCGGACCTGGACG
AGAGCGAGGACTGGATGAAGGCCGCAGGCGACTTGCGGGAAGGGAACATT
AACGAGAAGGTCTTGGCGGGGGAGGCGGGGCGGAGCAATGTGGATTCGAG
CTTTCAGTGGCGCGCGGGTAAGGAGCGGACGACGACGGGAATTTGGATGT
GGTCGGAGCCGTTCGTCCGGCGTGTGGCAAATGGGGAGGACGTCGCCGTG
TTGTTGATGGACACCCAGGGGATGTTCGATAACGAGACGAGCATGAATCT
GACAGCGTGTATTTTTGGGTTAAGTACCCTGTTGTCATCGTATCAGATTT
ATAATGTTCAGAACCGGATTCAGGAGGATAATTTGCAGCACTTGGCATTG
TTTTCGGAGTATGGACGGATCGCTCTGGCGGGGGAAGCGGGAAAGCAGCT
GCAGGAGGAGCAATCGACAAGTAGGAAGAGTTTGGAGAAGCAGCAGCAAA
AGAAGAAGGGAGACGAGAAGGAAGACGAGGAGAAAGAGGGGAAGGGAGGG
GAGGAGGATGGAGAAGAAATGATGCTGCCGGACGATGACGAGATTCCCTT
TCAACGTGTGGAATTTTTGGTGCGGGATTGGATGGACTTTGATGAGGAGC
TGCCGTTTTACAAGCTCAAG back to top
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