jgi.p|Nanoce1779_2|613595, mRNA_10687 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|613595
Unique Name	mRNA_10687
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1950
Alignment location	scaffold_76:37939..39888 +

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Properties


Property Name	Value
TranscriptId	613681
Track	FilteredModels2
ProteinId	613595

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_76	supercontig	scaffold_76:37939..39888 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613595	gene_10687	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613595	mRNA_10687-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10687	CDS_10687	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_76:37939..39888+
coding sequence from alignment at scaffold_76:37939..39888+

mRNA sequence

>mRNA_10687 ID=mRNA_10687|Name=jgi.p|Nanoce1779_2|613595|organism=Nannochloropsis oceanica|type=mRNA|length=1950bp
ACAGGTGGCGACCCCGTGCCTCTTTGCTTGTTGTATCTAGAGTAGCCAGC
TACACCTCTTCGAGACATGGGACGACGAGCAATTATCCTGGCCGCCGCGC
TCCCGGCACTGGGAGCCGCCTTCTTGGCGCCGCAAGGAGCCCGTCACTCG
TGGGTGGGGAAGAGCCAGCAGCAACCAAGGCAACAAGGCAAGGTCTACAT
GACCCGTCAGGGCGTTCAAGACAAGATGGAGCGGGCCTTCATGAGGAATG
CGATCCTGAACAAGCAGACGTACGGATATACGGTAGTTGTGGAGGAGACT
GAGTACGACGAGAACTTTTCCGCGGCGGGCCGGGACGAGGATGACGATGT
GGATGGGGAGGCAGAGGTGTTCTCGCCCTTGGAGCTCAAGGCAATGTACG
GCGAGGAGTACTCAGGGCCATTCGCGGAGGGTGACATTGGCTCTGGCATT
GGTGACTTTTCTTTGCCGTCCTATAGCAAGGGGGAGATCATCAAGGGGAT
TGTGCTTGAGTACGATAATGGCGGGGCGCTTGTCGATGTCGGGTCTAAGG
CTCCTGCATTCTTGCCAGCGCGGGAGGTAAGCATTAACCCAGCAGATAAG
ATGCAAGATCTGGTTCGCCTGGATGAGGAGCTGGAGTTCCAGGTGATTTC
TGATGGGGACGAGGATGGGGCGATTATGCTGTCGTTGAAGCGCATTCAGT
ACGAGAAGACTTGGGAGTCTCTGCAGAAGCTTCAGGCGGCGGATGCGTCG
TTCAAGGGCACGGTTACGGGCGTGAACAAGGGTGGGGCTATTGTGCTTGT
GGAGGGGCTGAGGGCTTTCTTGCCCGGCTCCCACTTGTCGGGCGTGTATG
CCGATGATTCCCTGGTGGGGCAAGTCCTGCCTCTGAAATTTTTGGAGCTG
AACAAGGATAATGGAAAGCTTGTGGTGTCTCACCGAAGGGCGCTGGTTGA
TAGCCAAATGGACTCTATGTCTCGAGGAGATGTGGTGTTGGGGATGGTGA
AGCTGCTGAAGCCCTACGGAGCGTTCGTGGAGGTGAATGGCATGAGCGGC
TTGCTGCACATTAGCCAGGTATCCTATGACCGTGTGGAGGACTTGAGTTT
GGTCGTCCAGCCGGGGCAGAAGATAAAGTGTATGATTGTGGATCATGATA
AGGTGAACGGACGAATCGCTTTGTCGACCAAGACATTGGAGCCTGAGCCG
GGTGACATGTTGAAGGACAGGCAAAAGGTGTTCGACATGGCCGAGGCAAC
TGCGAAGAAATATCACGAGCGCATGGAGGCCGAGAGGAAGGCGAGGGAGG
AAGCTGCGAAGGACATTGTATTGGGCTTGTCGGAGGGGTTGACTGGTCTG
GATGGTGGGTATGATGGCTTTGACTCCGATCCACTGGCTGGCCTTGATGC
TTTCAAGATGGACCCCCTCGCGGGCATCCAGATGGAGCCGATCTATACGG
ATGAGAAGAAGTAAAGAGAGAAAGGGCAGCCGGGGGGGGTCTGACTAGGA
ACTGGATGATGAACAGTGGGGAGCAAGGCGGGAGGAATAGAGAGAGGAAG
GGCGGTTTGGTGGTCATGCCTTTGTGGGAAGAGTTAACTTCGTTTTGAAG
GATGGGGACGTACGATTTCATCTATATACGAAAAGAGGGAGGGGTGACGG
AGGGTGTGAGAGGTAGGAAGGGCGCTCACATTTGCGGTGGCGGGAAGAGA
AGGCGACGATGACGAATACGGGCTTGACGACGACGGCAACAGCAACAGCA
GCAGCAGCAACAGAAGCTTCAACACGTGTTTCTCACGTTTATTTTGTCGA
TGGGACTGCTTGTTCTGTCTTTGTTTGGTGTCGGTCCTCACGGTTGTGAT
GCGGAGGAGTTGCACGCGTGGTGGTGTGTGTGTTTAAAACAACGAATTAA
AAGAAGCAGAACGAAAGAAGAAGACAAGAAAAAAAAGACAAGCTTAAGAA

protein sequence of jgi.p|Nanoce1779_2|613595

>mRNA_10687-protein ID=mRNA_10687-protein|Name=jgi.p|Nanoce1779_2|613595|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MGRRAIILAAALPALGAAFLAPQGARHSWVGKSQQQPRQQGKVYMTRQGV
QDKMERAFMRNAILNKQTYGYTVVVEETEYDENFSAAGRDEDDDVDGEAE
VFSPLELKAMYGEEYSGPFAEGDIGSGIGDFSLPSYSKGEIIKGIVLEYD
NGGALVDVGSKAPAFLPAREVSINPADKMQDLVRLDEELEFQVISDGDED
GAIMLSLKRIQYEKTWESLQKLQAADASFKGTVTGVNKGGAIVLVEGLRA
FLPGSHLSGVYADDSLVGQVLPLKFLELNKDNGKLVVSHRRALVDSQMDS
MSRGDVVLGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPG
QKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLKDRQKVFDMAEATAKKYH
ERMEAERKAREEAAKDIVLGLSEGLTGLDGGYDGFDSDPLAGLDAFKMDP
LAGIQMEPIYTDEKK*

mRNA from alignment at scaffold_76:37939..39888+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10687 ID=mRNA_10687|Name=jgi.p|Nanoce1779_2|613595|organism=Nannochloropsis oceanica|type=mRNA|length=1950bp|location=Sequence derived from alignment at scaffold_76:37939..39888+ (Nannochloropsis oceanica)
ACAGGTGGCGACCCCGTGCCTCTTTGCTTGTTGTATCTAGAGTAGCCAGC
TACACCTCTTCGAGACATGGGACGACGAGCAATTATCCTGGCCGCCGCGC
TCCCGGCACTGGGAGCCGCCTTCTTGGCGCCGCAAGGAGCCCGTCACTCG
TGGGTGGGGAAGAGCCAGCAGCAACCAAGGCAACAAGGCAAGGTCTACAT
GACCCGTCAGGGCGTTCAAGACAAGATGGAGCGGGCCTTCATGAGGAATG
CGATCCTGAACAAGCAGACGTACGGATATACGGTAGTTGTGGAGGAGACT
GAGTACGACGAGAACTTTTCCGCGGCGGGCCGGGACGAGGATGACGATGT
GGATGGGGAGGCAGAGGTGTTCTCGCCCTTGGAGCTCAAGGCAATGTACG
GCGAGGAGTACTCAGGGCCATTCGCGGAGGGTGACATTGGCTCTGGCATT
GGTGACTTTTCTTTGCCGTCCTATAGCAAGGGGGAGATCATCAAGGGGAT
TGTGCTTGAGTACGATAATGGCGGGGCGCTTGTCGATGTCGGGTCTAAGG
CTCCTGCATTCTTGCCAGCGCGGGAGGTAAGCATTAACCCAGCAGATAAG
ATGCAAGATCTGGTTCGCCTGGATGAGGAGCTGGAGTTCCAGGTGATTTC
TGATGGGGACGAGGATGGGGCGATTATGCTGTCGTTGAAGCGCATTCAGT
ACGAGAAGACTTGGGAGTCTCTGCAGAAGCTTCAGGCGGCGGATGCGTCG
TTCAAGGGCACGGTTACGGGCGTGAACAAGGGTGGGGCTATTGTGCTTGT
GGAGGGGCTGAGGGCTTTCTTGCCCGGCTCCCACTTGTCGGGCGTGTATG
CCGATGATTCCCTGGTGGGGCAAGTCCTGCCTCTGAAATTTTTGGAGCTG
AACAAGGATAATGGAAAGCTTGTGGTGTCTCACCGAAGGGCGCTGGTTGA
TAGCCAAATGGACTCTATGTCTCGAGGAGATGTGGTGTTGGGGATGGTGA
AGCTGCTGAAGCCCTACGGAGCGTTCGTGGAGGTGAATGGCATGAGCGGC
TTGCTGCACATTAGCCAGGTATCCTATGACCGTGTGGAGGACTTGAGTTT
GGTCGTCCAGCCGGGGCAGAAGATAAAGTGTATGATTGTGGATCATGATA
AGGTGAACGGACGAATCGCTTTGTCGACCAAGACATTGGAGCCTGAGCCG
GGTGACATGTTGAAGGACAGGCAAAAGGTGTTCGACATGGCCGAGGCAAC
TGCGAAGAAATATCACGAGCGCATGGAGGCCGAGAGGAAGGCGAGGGAGG
AAGCTGCGAAGGACATTGTATTGGGCTTGTCGGAGGGGTTGACTGGTCTG
GATGGTGGGTATGATGGCTTTGACTCCGATCCACTGGCTGGCCTTGATGC
TTTCAAGATGGACCCCCTCGCGGGCATCCAGATGGAGCCGATCTATACGG
ATGAGAAGAAGTAAAGAGAGAAAGGGCAGCCGGGGGGGGTCTGACTAGGA
ACTGGATGATGAACAGTGGGGAGCAAGGCGGGAGGAATAGAGAGAGGAAG
GGCGGTTTGGTGGTCATGCCTTTGTGGGAAGAGTTAACTTCGTTTTGAAG
GATGGGGACGTACGATTTCATCTATATACGAAAAGAGGGAGGGGTGACGG
AGGGTGTGAGAGGTAGGAAGGGCGCTCACATTTGCGGTGGCGGGAAGAGA
AGGCGACGATGACGAATACGGGCTTGACGACGACGGCAACAGCAACAGCA
GCAGCAGCAACAGAAGCTTCAACACGTGTTTCTCACGTTTATTTTGTCGA
TGGGACTGCTTGTTCTGTCTTTGTTTGGTGTCGGTCCTCACGGTTGTGAT
GCGGAGGAGTTGCACGCGTGGTGGTGTGTGTGTTTAAAACAACGAATTAA
AAGAAGCAGAACGAAAGAAGAAGACAAGAAAAAAAAGACAAGCTTAAGAA

Coding sequence (CDS) from alignment at scaffold_76:37939..39888+

>mRNA_10687 ID=mRNA_10687|Name=jgi.p|Nanoce1779_2|613595|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at scaffold_76:37939..39888+ (Nannochloropsis oceanica)
ATGGGACGACGAGCAATTATCCTGGCCGCCGCGCTCCCGGCACTGGGAGC
CGCCTTCTTGGCGCCGCAAGGAGCCCGTCACTCGTGGGTGGGGAAGAGCC
AGCAGCAACCAAGGCAACAAGGCAAGGTCTACATGACCCGTCAGGGCGTT
CAAGACAAGATGGAGCGGGCCTTCATGAGGAATGCGATCCTGAACAAGCA
GACGTACGGATATACGGTAGTTGTGGAGGAGACTGAGTACGACGAGAACT
TTTCCGCGGCGGGCCGGGACGAGGATGACGATGTGGATGGGGAGGCAGAG
GTGTTCTCGCCCTTGGAGCTCAAGGCAATGTACGGCGAGGAGTACTCAGG
GCCATTCGCGGAGGGTGACATTGGCTCTGGCATTGGTGACTTTTCTTTGC
CGTCCTATAGCAAGGGGGAGATCATCAAGGGGATTGTGCTTGAGTACGAT
AATGGCGGGGCGCTTGTCGATGTCGGGTCTAAGGCTCCTGCATTCTTGCC
AGCGCGGGAGGTAAGCATTAACCCAGCAGATAAGATGCAAGATCTGGTTC
GCCTGGATGAGGAGCTGGAGTTCCAGGTGATTTCTGATGGGGACGAGGAT
GGGGCGATTATGCTGTCGTTGAAGCGCATTCAGTACGAGAAGACTTGGGA
GTCTCTGCAGAAGCTTCAGGCGGCGGATGCGTCGTTCAAGGGCACGGTTA
CGGGCGTGAACAAGGGTGGGGCTATTGTGCTTGTGGAGGGGCTGAGGGCT
TTCTTGCCCGGCTCCCACTTGTCGGGCGTGTATGCCGATGATTCCCTGGT
GGGGCAAGTCCTGCCTCTGAAATTTTTGGAGCTGAACAAGGATAATGGAA
AGCTTGTGGTGTCTCACCGAAGGGCGCTGGTTGATAGCCAAATGGACTCT
ATGTCTCGAGGAGATGTGGTGTTGGGGATGGTGAAGCTGCTGAAGCCCTA
CGGAGCGTTCGTGGAGGTGAATGGCATGAGCGGCTTGCTGCACATTAGCC
AGGTATCCTATGACCGTGTGGAGGACTTGAGTTTGGTCGTCCAGCCGGGG
CAGAAGATAAAGTGTATGATTGTGGATCATGATAAGGTGAACGGACGAAT
CGCTTTGTCGACCAAGACATTGGAGCCTGAGCCGGGTGACATGTTGAAGG
ACAGGCAAAAGGTGTTCGACATGGCCGAGGCAACTGCGAAGAAATATCAC
GAGCGCATGGAGGCCGAGAGGAAGGCGAGGGAGGAAGCTGCGAAGGACAT
TGTATTGGGCTTGTCGGAGGGGTTGACTGGTCTGGATGGTGGGTATGATG
GCTTTGACTCCGATCCACTGGCTGGCCTTGATGCTTTCAAGATGGACCCC
CTCGCGGGCATCCAGATGGAGCCGATCTATACGGATGAGAAGAAGTAA

Synonyms

Publications