jgi.p|Nanoce1779_2|613595, gene_10687 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613595
Unique Namegene_10687
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_76:37939..39888 +

Link to JBrowse

Properties
Property NameValue
TranscriptId613681
ProteinId613595
Product nameplastid ribosomal protein S1
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:37939..39888 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL098ncniL098Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01110NO06G01110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613595mRNA_10687-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613595mRNA_10687Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|613595

>mRNA_10687-protein ID=mRNA_10687-protein|Name=jgi.p|Nanoce1779_2|613595|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MGRRAIILAAALPALGAAFLAPQGARHSWVGKSQQQPRQQGKVYMTRQGV
QDKMERAFMRNAILNKQTYGYTVVVEETEYDENFSAAGRDEDDDVDGEAE
VFSPLELKAMYGEEYSGPFAEGDIGSGIGDFSLPSYSKGEIIKGIVLEYD
NGGALVDVGSKAPAFLPAREVSINPADKMQDLVRLDEELEFQVISDGDED
GAIMLSLKRIQYEKTWESLQKLQAADASFKGTVTGVNKGGAIVLVEGLRA
FLPGSHLSGVYADDSLVGQVLPLKFLELNKDNGKLVVSHRRALVDSQMDS
MSRGDVVLGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPG
QKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLKDRQKVFDMAEATAKKYH
ERMEAERKAREEAAKDIVLGLSEGLTGLDGGYDGFDSDPLAGLDAFKMDP
LAGIQMEPIYTDEKK*
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Synonyms
Publications