NO06G01110, NO06G01110 (gene) Nannochloropsis oceanica

Overview
NameNO06G01110
Unique NameNO06G01110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1398
Alignment locationchr6:356096..357493 -

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Properties
Property NameValue
Description30s ribosomal protein s1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:356096..357493 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR003029Rbsml_prot_S1_RNA-bd_dom
IPR022967S1_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
BLAST of NO06G01110 vs. NCBI_GenBank
Match: EWM26097.1 (30s ribosomal protein s1 [Nannochloropsis gaditana])

HSP 1 Score: 786.6 bits (2030), Expect = 4.300e-224
Identity = 407/464 (87.72%), Postives = 429/464 (92.46%), Query Frame = 0
Query:    1 MGRRAIILAAALPALGAAFLAPQGARHSWVGKSQQQPRQQGKVYMTRQGVQDKMERAFMRNAILNKQTYGYTVVVEETEYDENFSAAGRDEDDDVDGEAEVFSPLELKAMYGEEYSGPFAEGDIGSGIGDFSLPSYSKGEIIKGIVLEYDNGGALVDVGSKAPAFLPAREVSINPADKMQDLVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLQKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADDSLVGQVLPLKFLELNKDNGKLVVSHRRALVDSQMDSMSRGDVVLGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLKDRQKVFDMAEATAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYDGFDSDPLAXXXXXXXXXXXXXXMEPIYTDEK 465
            MGRR +ILAAALPALGAAFL P G R SWVGKS Q PRQQGK+ MTRQGVQDKMERAFM+NAI++K+++GYT+V  E+EYD +F   G+DEDDDVDGEAEVFSPLELKAMYGEEY+GPF E DIGSGIGDFSLPSYSKGE+IKGIVLEYDNGGALVDVGSKAPAFLP REVSINPADKMQD+VRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESL KLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYAD+SLVGQVLPLKFLELNK+NGKLVVSHRRALVDSQMDSMSRGDVV+GMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDML+DRQKVFDMAE TAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGY+  DSDPLA              MEPIYTD++
Sbjct:    1 MGRRTVILAAALPALGAAFLLPAGIRQSWVGKS-QGPRQQGKLSMTRQGVQDKMERAFMKNAIMDKRSFGYTLVEAESEYDADF-RPGQDEDDDVDGEAEVFSPLELKAMYGEEYTGPFKEVDIGSGIGDFSLPSYSKGELIKGIVLEYDNGGALVDVGSKAPAFLPGREVSINPADKMQDIVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLLKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADESLVGQVLPLKFLELNKENGKLVVSHRRALVDSQMDSMSRGDVVVGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLRDRQKVFDMAEVTAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYENLDSDPLAGLDAFKMDPLAGIQMEPIYTDKE 462          
BLAST of NO06G01110 vs. NCBI_GenBank
Match: CBJ30695.1 (Plastid ribosomal protein S1 [Ectocarpus siliculosus])

HSP 1 Score: 386.0 bits (990), Expect = 1.700e-103
Identity = 197/373 (52.82%), Postives = 264/373 (70.78%), Query Frame = 0
Query:   78 TEYDENFSAAGRDEDDDVDGEAEVFSPLELKAMYGEEYSGPFAEGDIG---SGIGDF------SLPSYSKGEIIKGIVLEYDNGGALVDVGSKAPAFLPAREVSINPADKMQDLVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLQKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADDSLVGQVLPLKFLELNKDNGKLVVSHRRALVDSQMDSMSRGDVVLGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLKDRQKVFDMAEATAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYDGFDSDPLA 442
            TE DE     G + + D+DG+     P         +Y G     D+    +   DF      +  S+ +GEI+KG V++++  GAL+D+G+KA A++PARE S++  + M+ L+ LDE ++  +ISD +E G + +S++RIQYEK W  ++ +QA D  F+G +  VN+GGAIVLVEGLR FLPGSH+ G    +  VG+V+  KFLE+N +N KLVVS+RRA+++ +M  +SRGDVV G VK +KPYGAFVE+ GMSGLLHISQ+S+DR+EDL  ++Q G K+KCMI+DHDKVNGRIALSTKTLEPEPGDM+K+ QKV+DMAEATA KYH+RME ERKARE+AAK IV+GL +GL       D FDSD LA
Sbjct:   56 TEVDE---VVGTETEGDLDGDVSFVEPPNRFDKIKAQYKGVTTALDLSEETAAYEDFQTLLTDNKVSFERGEIVKGTVIQFEPSGALIDIGAKATAYMPAREASLDEVESMEGLLELDETMDVMIISDENEMGQVQVSIRRIQYEKAWSKVEDMQAEDVVFEGPIIAVNRGGAIVLVEGLRGFLPGSHMCGGLPTEDAVGKVMKYKFLEVNAENSKLVVSNRRAVLEQEMKELSRGDVVEGHVKAIKPYGAFVEIRGMSGLLHISQISFDRIEDLPSIMQMGMKLKCMIIDHDKVNGRIALSTKTLEPEPGDMIKNPQKVYDMAEATAAKYHQRMEHERKAREDAAKSIVMGLGDGL-------DSFDSDVLA 418          
BLAST of NO06G01110 vs. NCBI_GenBank
Match: EJK65790.1 (hypothetical protein THAOC_13316, partial [Thalassiosira oceanica])

HSP 1 Score: 367.5 bits (942), Expect = 6.300e-98
Identity = 190/342 (55.56%), Postives = 250/342 (73.10%), Query Frame = 0
Query:  115 YSGPFAEGDIGSGIGD---FSLP-----------SYSKGEIIKGIVLEYDNGGALVDVGSKAPAFLPAREVSI--NPADKMQDLVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLQKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADDSLVGQVLPLKFLELNKDNGKLVVSHRRALVDSQMDSMSRGDVVLGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLKDRQKVFDMAEATAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYDGFDSDPL 441
            Y GP  E  I SGI D   FS             S+++ +++ G V++YD GG +VD+G+K+ AFLP +E ++      ++++L+ LD E EFQ+IS+ DE+G +++S++RI+Y + W+ +   +  D  F      VN+GGAI LVEGLRAFLPGSHL+G   D+ LVGQ LPLKFLE+N+++ KLVVS+RRA+V++QM+S+SRGDV+ G+VK LKPYGAFVEV GMSGLLHISQ+S DR+ DL  V+QPGQKIKCMI+DHDK NGRIALSTKTLEPEPGDM++D ++V++MAE TAK Y ER E ERK REE+AKDIVLGL + L  L G      SD L
Sbjct:   27 YKGPKVE--ISSGIEDEVGFSYDSFEEAVSATDYSFNRNDVVTGTVVQYDKGGCVVDIGAKSSAFLPQQEAALVQEQGAQIENLIELDAEREFQIISEEDENGQLLVSVRRIEYRQAWDKVVAKRDTDEVFDAECVSVNRGGAIFLVEGLRAFLPGSHLTGRLPDEDLVGQTLPLKFLEVNQEDNKLVVSNRRAVVETQMESLSRGDVIDGLVKALKPYGAFVEVGGMSGLLHISQISMDRINDLEAVLQPGQKIKCMIIDHDKANGRIALSTKTLEPEPGDMIRDPERVYEMAEETAKVYLERQEQERKKREESAKDIVLGLGDALDELTGDSAEDSSDNL 366          
BLAST of NO06G01110 vs. NCBI_GenBank
Match: GAX15386.1 (small subunit ribosomal protein S1 [Fistulifera solaris])

HSP 1 Score: 367.1 bits (941), Expect = 8.200e-98
Identity = 186/326 (57.06%), Postives = 245/326 (75.15%), Query Frame = 0
Query:  118 PFAEGDIGSGIGDFSLPSYSKGEIIKGIVLEYD-NGGALVDVGSKAPAFLPAREVSINPADK--MQDLVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLQKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADDSLVGQVLPLKFLELNKDNGKLVVSHRRALVDSQMDSMSRGDVVLGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLKDRQKVFDMAEATAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYDGFDSDPL 441
            PF+  D    +   +  ++ +  +++G+ +EY    G LVD+G+KA AFLPA+E S+  AD   + D++ LD  + FQ+IS+ DE+G +++S+KRIQY++ WE +  L  +D   +  V  VN+GGAI L+EGLRAFLPGSHL+G   D+SL+GQ L LKFLE+N++NGKLVVS+R+A+V+ QM  +SRGD+V G+VK LKPYGAFVEV GMSGLLHISQ+SYDR++DL  V+QPG  +KCMI+DHDKVNGRIALSTKTLEPEPGDMLK+ Q V+D AE TA  YHE+MEA+R  RE+AA+DIVLGL + L  LDG      SDPL
Sbjct:   80 PFSYEDFAQAV-SVTEYAFERNSVVQGVAVEYSGEKGCLVDIGAKASAFLPAQESSLYMADNAGLSDVIPLDTPMNFQIISEEDENGQLIVSVKRIQYKEAWEKVLTLSESDEVVEAQVVAVNRGGAICLIEGLRAFLPGSHLAGQLPDESLIGQTLKLKFLEVNQENGKLVVSNRKAVVEQQMADLSRGDLVEGIVKALKPYGAFVEVGGMSGLLHISQISYDRIDDLEKVLQPGMAVKCMIIDHDKVNGRIALSTKTLEPEPGDMLKNSQMVYDNAEQTAILYHEKMEAQRLEREKAARDIVLGLGDSLDDLDG---SSSSDPL 401          
BLAST of NO06G01110 vs. NCBI_GenBank
Match: GAX25778.1 (small subunit ribosomal protein S1 [Fistulifera solaris])

HSP 1 Score: 365.9 bits (938), Expect = 1.800e-97
Identity = 185/326 (56.75%), Postives = 245/326 (75.15%), Query Frame = 0
Query:  118 PFAEGDIGSGIGDFSLPSYSKGEIIKGIVLEYD-NGGALVDVGSKAPAFLPAREVSINPADK--MQDLVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLQKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADDSLVGQVLPLKFLELNKDNGKLVVSHRRALVDSQMDSMSRGDVVLGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLKDRQKVFDMAEATAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYDGFDSDPL 441
            PF+  D    +   +  ++ +  +++G+ +EY    G LVD+G+KA AFLPA+E S+  AD   + D++ LD  + FQ+IS+ DE+G +++S+KRIQY++ WE +  L  AD   +  V  VN+GGAI L+EGLRAFLPGSHL+G   D+SL+GQVL LKFLE+N++NGKLVVS+R+A+V+ QM  +SRGD+V G+VK LKPYGAFVEV GMSGLLHISQ+SYDR++DL  V+QPG  +KCMI+DHDKVNGRIALSTKTLEPEPGDMLK+ Q V+D AE TA  YH++ME +R  RE+AA+DIV+GL + L  LDG      SDPL
Sbjct:   80 PFSYEDFAQAV-SVTEYAFERNSVVQGVAVEYSGEKGCLVDIGAKASAFLPAQESSLYMADNAGLSDVIPLDTPMNFQIISEEDENGQLIVSVKRIQYKEAWEKVLTLSEADEVVEAQVVAVNRGGAICLIEGLRAFLPGSHLAGQLPDESLIGQVLKLKFLEVNQENGKLVVSNRKAIVEQQMADLSRGDLVEGIVKALKPYGAFVEVGGMSGLLHISQISYDRIDDLEKVLQPGMAVKCMIIDHDKVNGRIALSTKTLEPEPGDMLKNSQMVYDNAEQTAILYHKKMEEQRLEREKAARDIVMGLGDSLDDLDG---SSSSDPL 401          
BLAST of NO06G01110 vs. NCBI_GenBank
Match: OEU19071.1 (small ribosomal protein S1 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 355.1 bits (910), Expect = 3.200e-94
Identity = 180/309 (58.25%), Postives = 236/309 (76.38%), Query Frame = 0
Query:  135 SYSKGEIIKGIVLEYDNGGALVDVGSKAPAFLPAREVS-INP-ADKMQDLVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLQKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADDSLVGQVLPLKFLELNKDNGKLVVSHRRALVDSQMDSMSRGDVVLGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLKDRQKVFDMAEATAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYDGFDSDPLA 442
            S+ +  I+KG+ ++Y+  G +VD+G+KA A+LP  E + I P   ++ DLV L+EELEFQ+IS+ DE+G +++S++RIQY   W+++ +LQ+ DA  +  V  VN+GGAI LVEGLRAFLPGSHL+G  A D L+GQVLPLKFLE+N++N KLVVS+R+A+V++QM  +SRGD+V G V+ LKPYGAF+EV GMSGLLHISQ+SYDR+EDL  V+QPG  +KCMI+DHDKVNGRIALSTKTLEP PGDMLK+ Q VFDMAEA+A+KYH +ME ER        D + GL + L+  D       SDPLA
Sbjct:   36 SFERDAIVKGVCVQYEPKGVIVDIGAKASAYLPEAEAALIQPLGSEVADLVNLNEELEFQIISEEDENGQLLVSIRRIQYRSAWDTILELQSNDAILEAEVVSVNRGGAICLVEGLRAFLPGSHLAGKMATDDLIGQVLPLKFLEVNQENNKLVVSNRKAVVETQMADLSRGDLVEGTVQALKPYGAFIEVGGMSGLLHISQISYDRIEDLEQVLQPGMAVKCMIIDHDKVNGRIALSTKTLEPNPGDMLKNSQLVFDMAEASAEKYHTKMEEERLG------DSLDGLGDDLSDSDSK----SSDPLA 334          
BLAST of NO06G01110 vs. NCBI_GenBank
Match: XP_002292331.1 (RS1, ribosomal protein 1, partial [Thalassiosira pseudonana CCMP1335] >EED90306.1 RS1, ribosomal protein 1, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 334.0 bits (855), Expect = 7.700e-88
Identity = 157/270 (58.15%), Postives = 215/270 (79.63%), Query Frame = 0
Query:  135 SYSKGEIIKGIVLEYDNGGALVDVGSKAPAFLPAREVSI--NPADKMQDLVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLQKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADDSLVGQVLPLKFLELNKDNGKLVVSHRRALVDSQMDSMSRGDVVLGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLKDRQKVFDMAEATAKKYHER 403
            ++++ +I+KG V++YD GG +VD+G+KA A+LP +E ++       ++ ++ +DEE +F++IS+ DE+G +++S++RIQY + W+ +   Q +D  F+     VN+GGAI LVEGLRAFLPGSHL+G   DD LVGQ LPLKFLE+N+++ KLVVS+RRA+V+ QM  +SRGDV+ G+VK LKPYGAFVEV GMSGLLHISQ+S DR+ DL  V+QPGQKIKCMI+DHDKVNGRIALSTKTLEPEPGDM+KD  +V++MA+ TA+ Y E+
Sbjct:   18 AFNRNDIVKGTVVQYDKGGCIVDIGAKASAYLPLQEATLFQEQGQSIEGIIDIDEERQFEIISEEDENGQLLVSIRRIQYREAWDKVIAKQDSDEVFEAECVSVNRGGAIFLVEGLRAFLPGSHLTGRLPDDDLVGQTLPLKFLEVNQEDNKLVVSNRRAVVEEQMAELSRGDVIDGIVKALKPYGAFVEVGGMSGLLHISQISMDRITDLEQVLQPGQKIKCMIIDHDKVNGRIALSTKTLEPEPGDMIKDPARVYEMADETARVYLEK 287          
BLAST of NO06G01110 vs. NCBI_GenBank
Match: XP_002178261.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49926.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 327.8 bits (839), Expect = 5.500e-86
Identity = 158/282 (56.03%), Postives = 211/282 (74.82%), Query Frame = 0
Query:  118 PFAEGDIGSGIGDFSLPSYSKGEIIKGIVLEYDNGGALVDVGSKAPAFLPAREVSINPADKMQDLVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLQKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGVYADDSLVGQVLPLKFLELNKDNGKLVVSHRRALVDSQMDSMSRGDVVLGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLKDRQKVFDMAEATAKKY 400
            PF+  +    + D +   + +  +++G  +EY   G LVD+G+KA A+LP +E S++    ++D V LD  +EFQ+IS+ DE+G +++S+KRI+Y+K WE +  +   D   +  V  VN+GGAI LVEGLRAFLPGSHL+G   D+ L+G  L LKFLE+N++  KLVVS+R+A+V+ QM  +SRGD+V GMVK LKPYGAFVEV GMSGLLHISQ+SYDR++DL  V+QPG ++KCMI+DHDKVNGRIALSTKTLEPEPGDMLKD + VF+ AEATA  Y
Sbjct:    4 PFSYDEFAKAV-DETEYGFERNAVVQGTAVEYSGSGCLVDIGAKASAYLPDQEASLDQDLNIEDAVPLDTPMEFQIISEEDENGQLLVSIKRIEYKKAWEKVLSMAEEDQILEAKVIAVNRGGAICLVEGLRAFLPGSHLTGQLPDEDLIGNNLQLKFLEVNQETNKLVVSNRKAVVEQQMADLSRGDLVAGMVKALKPYGAFVEVGGMSGLLHISQISYDRIDDLEKVLQPGMQVKCMIIDHDKVNGRIALSTKTLEPEPGDMLKDPKMVFEKAEATAAAY 284          
BLAST of NO06G01110 vs. NCBI_GenBank
Match: XP_009040124.1 (hypothetical protein AURANDRAFT_38598 [Aureococcus anophagefferens] >EGB05223.1 hypothetical protein AURANDRAFT_38598 [Aureococcus anophagefferens])

HSP 1 Score: 327.0 bits (837), Expect = 9.400e-86
Identity = 167/308 (54.22%), Postives = 223/308 (72.40%), Query Frame = 0
Query:  135 SYSKGEIIKGIVLEYDN-GGALVDVGSKAPAFLPAREVSINP---ADKMQDLVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLQKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGV-YADDSLVGQVLPLKFLELNKDNGKLVVSHRRALVDSQMDSMSRGDVVLGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLKDRQKVFDMAEATAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYDGFDS 438
            S+  G+I+ G V++YD    A+V+VG+K  A LP RE +I P    + +   V + E+ EFQ++SD  +DG + +S+K+I Y K WE+L +  A D  F+  +  VN+GGAIVLVEGLRAFLPGSH+ G   A ++++G+ +PLKFLE+N++  KLVVS+RRA+++  M S+ RGDV  G V  +KPYGAFVE+ GMSGLLHISQ+SYDRVEDL   +  G  IKCM++DHDK  GRIALSTKTLEPEPGDML+D  +VF +AE TA KYH R+EAE+ ARE+AAK++VLGL + L  L+   D  DS
Sbjct:   67 SFKNGDILTGTVVQYDGPQKAMVEVGAKTAAVLPLREATIAPLGDGETIATFVDVGEQYEFQIVSDSRDDGQVTVSIKKIMYAKAWETLSEWYAEDPVFEAEIVQVNRGGAIVLVEGLRAFLPGSHIMGSGGASEAMIGKKIPLKFLEVNQEANKLVVSNRRAVIEHSMASIKRGDVYDGTVTAVKPYGAFVEIMGMSGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAAGRIALSTKTLEPEPGDMLRDPNRVFSLAEETAAKYHARVEAEKIAREQAAKEMVLGLGDSLDSLESVLDPSDS 374          
BLAST of NO06G01110 vs. NCBI_GenBank
Match: XP_009039852.1 (hypothetical protein AURANDRAFT_54676 [Aureococcus anophagefferens] >EGB05470.1 hypothetical protein AURANDRAFT_54676 [Aureococcus anophagefferens])

HSP 1 Score: 324.7 bits (831), Expect = 4.700e-85
Identity = 165/304 (54.28%), Postives = 221/304 (72.70%), Query Frame = 0
Query:  135 SYSKGEIIKGIVLEYDN-GGALVDVGSKAPAFLPAREVSINP---ADKMQDLVRLDEELEFQVISDGDEDGAIMLSLKRIQYEKTWESLQKLQAADASFKGTVTGVNKGGAIVLVEGLRAFLPGSHLSGV-YADDSLVGQVLPLKFLELNKDNGKLVVSHRRALVDSQMDSMSRGDVVLGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPGQKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLKDRQKVFDMAEATAKKYHERMEAERKAREEAAKDIVLGLSEGLTGLDGGYD 434
            S+  G+I+ G V++YD    A+V+VG+K  A LP RE +I P    + +   V + E+ EFQ++SD  +DG + +S+K+I Y K WE+L +  A D  F+  +  VN+GGAIVLVEGLRAFLPGSH+ G   A ++++G+ +PLKFLE+N++  KLVVS+RRA+++  M S+ RGDV  G V  +KPYGAFVE+ GMSGLLHISQ+SYDRVEDL   +  G  IKCM++DHDK  GRIALSTKTLEPEPGDML+D  +VF +AE TA KYH R+EAE+ ARE+AAK++VLGL + L  L+   D
Sbjct:   67 SFKNGDILTGTVVQYDGPQKAMVEVGAKTAAVLPLREATIAPLGDGETIATFVDVGEQYEFQIVSDSRDDGQVTVSIKKIMYAKAWETLSEWYAEDPVFEAEIVQVNRGGAIVLVEGLRAFLPGSHIMGSGGASEAMIGKKIPLKFLEVNQEANKLVVSNRRAVIEHSMASIKRGDVYDGTVTAVKPYGAFVEIMGMSGLLHISQISYDRVEDLDATLACGMAIKCMVIDHDKAAGRIALSTKTLEPEPGDMLRDPNRVFSLAEETAAKYHARVEAEKIAREQAAKEMVLGLGDSLGSLESVLD 370          
The following BLAST results are available for this feature:
BLAST of NO06G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26097.14.300e-22487.7230s ribosomal protein s1 [Nannochloropsis gaditana... [more]
CBJ30695.11.700e-10352.82Plastid ribosomal protein S1 [Ectocarpus siliculos... [more]
EJK65790.16.300e-9855.56hypothetical protein THAOC_13316, partial [Thalass... [more]
GAX15386.18.200e-9857.06small subunit ribosomal protein S1 [Fistulifera so... [more]
GAX25778.11.800e-9756.75small subunit ribosomal protein S1 [Fistulifera so... [more]
OEU19071.13.200e-9458.25small ribosomal protein S1 [Fragilariopsis cylindr... [more]
XP_002292331.17.700e-8858.15RS1, ribosomal protein 1, partial [Thalassiosira p... [more]
XP_002178261.15.500e-8656.03predicted protein, partial [Phaeodactylum tricornu... [more]
XP_009040124.19.400e-8654.22hypothetical protein AURANDRAFT_38598 [Aureococcus... [more]
XP_009039852.14.700e-8554.28hypothetical protein AURANDRAFT_54676 [Aureococcus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR098ncniR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000338NSK000338Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01110.1NO06G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613595gene_10687Nannochloropsis oceanica (N. oceanica CCMP1779)gene
rps1gene4377Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01110.1NO06G01110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01110 ID=NO06G01110|Name=NO06G01110|organism=Nannochloropsis oceanica|type=gene|length=1398bp
ATGGGACGACGAGCAATTATCCTGGCCGCCGCGCTCCCGGCACTGGGAGC
CGCCTTCTTGGCGCCGCAAGGAGCCCGTCACTCGTGGGTGGGGAAGAGCC
AGCAGCAACCAAGGCAACAAGGCAAGGTCTACATGACCCGTCAGGGCGTT
CAAGACAAGATGGAGCGGGCCTTCATGAGGAATGCGATCCTGAACAAGCA
GACGTACGGATATACGGTAGTTGTGGAGGAGACTGAGTACGACGAGAACT
TTTCCGCGGCGGGCCGGGACGAGGATGACGATGTGGATGGGGAGGCAGAG
GTGTTCTCGCCCTTGGAGCTCAAGGCAATGTACGGCGAGGAGTACTCAGG
GCCATTCGCGGAGGGTGACATTGGCTCTGGCATTGGTGACTTTTCTTTGC
CGTCCTATAGCAAGGGGGAGATCATCAAGGGGATTGTGCTTGAGTACGAT
AATGGCGGGGCGCTTGTCGATGTCGGGTCTAAGGCTCCTGCATTCTTGCC
AGCGCGGGAGGTAAGCATTAACCCAGCAGATAAGATGCAAGATCTGGTTC
GCCTGGATGAGGAGCTGGAGTTCCAGGTGATTTCTGATGGGGACGAGGAT
GGGGCGATTATGCTGTCGTTGAAGCGCATTCAGTACGAGAAGACTTGGGA
GTCTCTGCAGAAGCTTCAGGCGGCGGATGCGTCGTTCAAGGGCACGGTTA
CGGGCGTGAACAAGGGTGGGGCTATTGTGCTTGTGGAGGGGCTGAGGGCT
TTCTTGCCCGGCTCCCACTTGTCGGGCGTGTATGCCGATGATTCCCTGGT
GGGGCAAGTCCTGCCTCTGAAATTTTTGGAGCTGAACAAGGATAATGGAA
AGCTTGTGGTGTCTCACCGAAGGGCGCTGGTTGATAGCCAAATGGACTCT
ATGTCTCGAGGAGATGTGGTGTTGGGGATGGTGAAGCTGCTGAAGCCCTA
CGGAGCGTTCGTGGAGGTGAATGGCATGAGCGGCTTGCTGCACATTAGCC
AGGTATCCTATGACCGTGTGGAGGACTTGAGTTTGGTCGTCCAGCCGGGG
CAGAAGATAAAGTGTATGATTGTGGATCATGATAAGGTGAACGGACGAAT
CGCTTTGTCGACCAAGACATTGGAGCCTGAGCCGGGTGACATGTTGAAGG
ACAGGCAAAAGGTGTTCGACATGGCCGAGGCAACTGCGAAGAAATATCAC
GAGCGCATGGAGGCCGAGAGGAAGGCGAGGGAGGAAGCTGCGAAGGACAT
TGTATTGGGCTTGTCGGAGGGGTTGACTGGTCTGGATGGTGGGTATGATG
GCTTTGACTCCGATCCACTGGCTGGCCTTGATGCTTTCAAGATGGACCCC
CTCGCGGGCATCCAGATGGAGCCGATCTATACGGATGAGAAGAAGTAA
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protein sequence of NO06G01110.1

>NO06G01110.1-protein ID=NO06G01110.1-protein|Name=NO06G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MGRRAIILAAALPALGAAFLAPQGARHSWVGKSQQQPRQQGKVYMTRQGV
QDKMERAFMRNAILNKQTYGYTVVVEETEYDENFSAAGRDEDDDVDGEAE
VFSPLELKAMYGEEYSGPFAEGDIGSGIGDFSLPSYSKGEIIKGIVLEYD
NGGALVDVGSKAPAFLPAREVSINPADKMQDLVRLDEELEFQVISDGDED
GAIMLSLKRIQYEKTWESLQKLQAADASFKGTVTGVNKGGAIVLVEGLRA
FLPGSHLSGVYADDSLVGQVLPLKFLELNKDNGKLVVSHRRALVDSQMDS
MSRGDVVLGMVKLLKPYGAFVEVNGMSGLLHISQVSYDRVEDLSLVVQPG
QKIKCMIVDHDKVNGRIALSTKTLEPEPGDMLKDRQKVFDMAEATAKKYH
ERMEAERKAREEAAKDIVLGLSEGLTGLDGGYDGFDSDPLAGLDAFKMDP
LAGIQMEPIYTDEKK*
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Synonyms
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