jgi.p|Nanoce1779_2|613634, mRNA_10696 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613634
Unique NamemRNA_10696
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1065
Alignment locationscaffold_76:66438..67502 -

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Properties
Property NameValue
TranscriptId613720
TrackFilteredModels2
ProteinId613634
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:66438..67502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613634gene_10696Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613634mRNA_10696-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10696CDS_10696Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10696 ID=mRNA_10696|Name=jgi.p|Nanoce1779_2|613634|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp
TACGTGCTGCAGCTGTAGACGCAGGTAATTCCTTCGCCGTCGCCCCGTGC
CTGGTCTTTCCATCTTCTCATGTTACGACCTCCTCGCTGCACCTTGCTGC
TCCCGCTGCCCGTCACCGCATTCACAATGTTGCGGCCGCGGGTTTTGAAA
ATCAGGCGGCGATGTACGAGAAAACGCGACCGTCTTATCCTTTCAACTCC
GTGGAGTACGTCATCGAGCTAATTCGAGCGCAGAAGCTCCAAGGCACATC
ATCCCCCGTGCTGGACTTGGCGGCGGGAGGAGGGAAATTCACCCGTCTCT
TGGCCAGACATCCCTGGCTAGAGGTGAGTGCGGTGGAGCCCGTGGCGGCC
ATGCGCAGTGTGTTCAAAGAGATGATGCCTATGATTCCTTGCCTTGAAGG
GACAGGTGATGCCATTCCTTTCGGGGATAAGCATTTTGATGCTGTGACTG
TCGCGCAGGCGTTTCATTGGATGAGCACTCTCGAATCCCTGCGAGAAATT
CATCGGGTCCTCCGTCCGAAAGGCACGTTGGTCCTAATTTGGAATATGGA
AAGTCGGAGTGCACCGTGGATGGGGCAATTAAGAGACGTGTATGAGCAGT
ATGATACACATATACCTCAGTACCGTCATGGGGAATGGAAAAAAGTCTTT
GCCTTGCCCGAAGCCCAACGCTTGTTTCCCGGCCCGCTGACTACTCGTTT
TTTCCAGCAAGAAATGATAGTTACTAAGGGCATGGCATGGGAGAGGGTGT
TGAGTAAGAGCTATATCGCGTCATTGACGAGATCGGAGCAGGCGCTCGTT
CGGTCGCGGGTGGACCGAGTGGTGGAGGAGCACATAGCTGCTTTTGATTT
GTCTGTGGAGGATCCAGTGACAGGTAAGATAGATAGGGCGGCTCGCCAAC
CGATTGATACTGAAGTGACTTTCATTCGGGCGGCTTGAGAGAGTAAGAAG
GTAATGATGTTGATGATGTTGATGATAATGACAGCTTGACAGCTAGTACA
TACGACATTTTGGATGCGTATGTAATTTTTGACCCAGATGAATATTAAAA
TTAAGTAAAGCCTTG
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protein sequence of jgi.p|Nanoce1779_2|613634

>mRNA_10696-protein ID=mRNA_10696-protein|Name=jgi.p|Nanoce1779_2|613634|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
VDAGNSFAVAPCLVFPSSHVTTSSLHLAAPAARHRIHNVAAAGFENQAAM
YEKTRPSYPFNSVEYVIELIRAQKLQGTSSPVLDLAAGGGKFTRLLARHP
WLEVSAVEPVAAMRSVFKEMMPMIPCLEGTGDAIPFGDKHFDAVTVAQAF
HWMSTLESLREIHRVLRPKGTLVLIWNMESRSAPWMGQLRDVYEQYDTHI
PQYRHGEWKKVFALPEAQRLFPGPLTTRFFQQEMIVTKGMAWERVLSKSY
IASLTRSEQALVRSRVDRVVEEHIAAFDLSVEDPVTGKIDRAARQPIDTE
VTFIRAA*
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mRNA from alignment at scaffold_76:66438..67502-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10696 ID=mRNA_10696|Name=jgi.p|Nanoce1779_2|613634|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp|location=Sequence derived from alignment at scaffold_76:66438..67502- (Nannochloropsis oceanica)
TACGTGCTGCAGCTGTAGACGCAGGTAATTCCTTCGCCGTCGCCCCGTGC
CTGGTCTTTCCATCTTCTCATGTTACGACCTCCTCGCTGCACCTTGCTGC
TCCCGCTGCCCGTCACCGCATTCACAATGTTGCGGCCGCGGGTTTTGAAA
ATCAGGCGGCGATGTACGAGAAAACGCGACCGTCTTATCCTTTCAACTCC
GTGGAGTACGTCATCGAGCTAATTCGAGCGCAGAAGCTCCAAGGCACATC
ATCCCCCGTGCTGGACTTGGCGGCGGGAGGAGGGAAATTCACCCGTCTCT
TGGCCAGACATCCCTGGCTAGAGGTGAGTGCGGTGGAGCCCGTGGCGGCC
ATGCGCAGTGTGTTCAAAGAGATGATGCCTATGATTCCTTGCCTTGAAGG
GACAGGTGATGCCATTCCTTTCGGGGATAAGCATTTTGATGCTGTGACTG
TCGCGCAGGCGTTTCATTGGATGAGCACTCTCGAATCCCTGCGAGAAATT
CATCGGGTCCTCCGTCCGAAAGGCACGTTGGTCCTAATTTGGAATATGGA
AAGTCGGAGTGCACCGTGGATGGGGCAATTAAGAGACGTGTATGAGCAGT
ATGATACACATATACCTCAGTACCGTCATGGGGAATGGAAAAAAGTCTTT
GCCTTGCCCGAAGCCCAACGCTTGTTTCCCGGCCCGCTGACTACTCGTTT
TTTCCAGCAAGAAATGATAGTTACTAAGGGCATGGCATGGGAGAGGGTGT
TGAGTAAGAGCTATATCGCGTCATTGACGAGATCGGAGCAGGCGCTCGTT
CGGTCGCGGGTGGACCGAGTGGTGGAGGAGCACATAGCTGCTTTTGATTT
GTCTGTGGAGGATCCAGTGACAGGTAAGATAGATAGGGCGGCTCGCCAAC
CGATTGATACTGAAGTGACTTTCATTCGGGCGGCTTGAGAGAGTAAGAAG
GTAATGATGTTGATGATGTTGATGATAATGACAGCTTGACAGCTAGTACA
TACGACATTTTGGATGCGTATGTAATTTTTGACCCAGATGAATATTAAAA
TTAAGTAAAGCCTTG
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Coding sequence (CDS) from alignment at scaffold_76:66438..67502-

>mRNA_10696 ID=mRNA_10696|Name=jgi.p|Nanoce1779_2|613634|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_76:66438..67502- (Nannochloropsis oceanica)
GTAGACGCAGGTAATTCCTTCGCCGTCGCCCCGTGCCTGGTCTTTCCATC
TTCTCATGTTACGACCTCCTCGCTGCACCTTGCTGCTCCCGCTGCCCGTC
ACCGCATTCACAATGTTGCGGCCGCGGGTTTTGAAAATCAGGCGGCGATG
TACGAGAAAACGCGACCGTCTTATCCTTTCAACTCCGTGGAGTACGTCAT
CGAGCTAATTCGAGCGCAGAAGCTCCAAGGCACATCATCCCCCGTGCTGG
ACTTGGCGGCGGGAGGAGGGAAATTCACCCGTCTCTTGGCCAGACATCCC
TGGCTAGAGGTGAGTGCGGTGGAGCCCGTGGCGGCCATGCGCAGTGTGTT
CAAAGAGATGATGCCTATGATTCCTTGCCTTGAAGGGACAGGTGATGCCA
TTCCTTTCGGGGATAAGCATTTTGATGCTGTGACTGTCGCGCAGGCGTTT
CATTGGATGAGCACTCTCGAATCCCTGCGAGAAATTCATCGGGTCCTCCG
TCCGAAAGGCACGTTGGTCCTAATTTGGAATATGGAAAGTCGGAGTGCAC
CGTGGATGGGGCAATTAAGAGACGTGTATGAGCAGTATGATACACATATA
CCTCAGTACCGTCATGGGGAATGGAAAAAAGTCTTTGCCTTGCCCGAAGC
CCAACGCTTGTTTCCCGGCCCGCTGACTACTCGTTTTTTCCAGCAAGAAA
TGATAGTTACTAAGGGCATGGCATGGGAGAGGGTGTTGAGTAAGAGCTAT
ATCGCGTCATTGACGAGATCGGAGCAGGCGCTCGTTCGGTCGCGGGTGGA
CCGAGTGGTGGAGGAGCACATAGCTGCTTTTGATTTGTCTGTGGAGGATC
CAGTGACAGGTAAGATAGATAGGGCGGCTCGCCAACCGATTGATACTGAA
GTGACTTTCATTCGGGCGGCTTGA
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Synonyms
Publications