jgi.p|Nanoce1779_2|613559, mRNA_10675 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613559
Unique NamemRNA_10675
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length498
Alignment locationscaffold_76:14030..14527 +

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Properties
Property NameValue
TranscriptId613645
TrackFilteredModels2
ProteinId613559
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:14030..14527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613559gene_10675Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613559mRNA_10675-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10675CDS_10675Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10675 ID=mRNA_10675|Name=jgi.p|Nanoce1779_2|613559|organism=Nannochloropsis oceanica|type=mRNA|length=498bp
CAATATCTATATGGTCCTTTTATATTTCTCCTTTCTGCTAGAATTTGAAT
TCTCCCCATATTTCTCGTCTCTTCACATGCACACACATGCCGACTTATCG
CTTACCCCTTCCTGTTTTATTCTATCACCCTCACTTTGTGCCATTCCATG
GCACATTGCGAATGTCAATCCCTTTCTTATTCCTTCTTTGAGTACATCTA
GACATTTACTTTATTTTCCCGTTTGTCTCTGGTCTGTTTTTGTCTCCTCC
TTTCGCTTTCTCCACTGATCACACCTCCCATGTCTGGCATGCGATGTATT
TACTTGTTGAGCTTCAAGACCAGCTGAGCAAGGCCGGCGCAAGCAGACGT
GAAACCAGCATTGTAATCTATGTTTGGTGTGGTATAGTGGGTTTTACAAT
AAGTATGAGATCACAAACCAAAGAAAAATAAGGAAAACATATAAATCCCC
CGCCTTCCCCACCCTCCTTTCTCACCAGTCGCCACTTCGTTCGTCACG
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protein sequence of jgi.p|Nanoce1779_2|613559

>mRNA_10675-protein ID=mRNA_10675-protein|Name=jgi.p|Nanoce1779_2|613559|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MVLLYFSFLLEFEFSPYFSSLHMHTHADLSLTPSCFILSPSLCAIPWHIA
NVNPFLIPSLSTSRHLLYFPVCLWSVFVSSFRFLH*
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mRNA from alignment at scaffold_76:14030..14527+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10675 ID=mRNA_10675|Name=jgi.p|Nanoce1779_2|613559|organism=Nannochloropsis oceanica|type=mRNA|length=498bp|location=Sequence derived from alignment at scaffold_76:14030..14527+ (Nannochloropsis oceanica)
CAATATCTATATGGTCCTTTTATATTTCTCCTTTCTGCTAGAATTTGAAT
TCTCCCCATATTTCTCGTCTCTTCACATGCACACACATGCCGACTTATCG
CTTACCCCTTCCTGTTTTATTCTATCACCCTCACTTTGTGCCATTCCATG
GCACATTGCGAATGTCAATCCCTTTCTTATTCCTTCTTTGAGTACATCTA
GACATTTACTTTATTTTCCCGTTTGTCTCTGGTCTGTTTTTGTCTCCTCC
TTTCGCTTTCTCCACTGATCACACCTCCCATGTCTGGCATGCGATGTATT
TACTTGTTGAGCTTCAAGACCAGCTGAGCAAGGCCGGCGCAAGCAGACGT
GAAACCAGCATTGTAATCTATGTTTGGTGTGGTATAGTGGGTTTTACAAT
AAGTATGAGATCACAAACCAAAGAAAAATAAGGAAAACATATAAATCCCC
CGCCTTCCCCACCCTCCTTTCTCACCAGTCGCCACTTCGTTCGTCACG
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Coding sequence (CDS) from alignment at scaffold_76:14030..14527+

>mRNA_10675 ID=mRNA_10675|Name=jgi.p|Nanoce1779_2|613559|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at scaffold_76:14030..14527+ (Nannochloropsis oceanica)
ATGGTCCTTTTATATTTCTCCTTTCTGCTAGAATTTGAATTCTCCCCATA
TTTCTCGTCTCTTCACATGCACACACATGCCGACTTATCGCTTACCCCTT
CCTGTTTTATTCTATCACCCTCACTTTGTGCCATTCCATGGCACATTGCG
AATGTCAATCCCTTTCTTATTCCTTCTTTGAGTACATCTAGACATTTACT
TTATTTTCCCGTTTGTCTCTGGTCTGTTTTTGTCTCCTCCTTTCGCTTTC
TCCACTGA
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Synonyms
Publications