jgi.p|Nanoce1779_2|613545, mRNA_10668 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|613545
Unique Name	mRNA_10668
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2446
Alignment location	scaffold_76:861..3306 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	613631
Track	FilteredModels2
ProteinId	613545

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_76	supercontig	scaffold_76:861..3306 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613545	gene_10668	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613545	mRNA_10668-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10668	CDS_10668	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_76:861..3306+
coding sequence from alignment at scaffold_76:861..3306+

mRNA sequence

>mRNA_10668 ID=mRNA_10668|Name=jgi.p|Nanoce1779_2|613545|organism=Nannochloropsis oceanica|type=mRNA|length=2446bp
GTTATTGTGGAATGATTTAGGAGGGCTGCGGGTTGTTGGCAGAAAAGGAG
TAGGGGATGGTGGTGGTGGTGGTGGTAGAGGAGGGGAAGGGTGGGGAATG
GTGCCAACCATTGCTGCATCCTCATCGTCCTCGTCGCAGGTATTGATTGA
GCTTAGTGATGAAGAGGAGGAAGAGAAAAGTGGCACTGGGAATCATCATC
ATCATCATCAGCCGCAGCAGCAGCGACATATCTCTACAGCAACTCGCTCG
CCGTCATCCTTCCAACCCCTCGGTCCTTCCTTCATCCCTCCTTCCTACGC
CCAGCTCTTCGATTCCTCCTTATCCCTAGCTGACGCGTTCGAGCAAGCCG
TGGTAGCAGGAGACGCAGTGACAGCCTATTCATGCCTCCACGCTGTCTCG
AATCTATTCCTCCCTCCTCCTCCTTTTCAGGAGGAGCAAGCGCACGAGCA
GAAACGCGACCGCACACCTTTACTTTCTTCCCTCTCCACTTTAGAAGAAG
ACAGGGCCTCTAGCAGCAGCGGCGGCGGTTGTAGTGGTGATGGTCGAGGG
GTGGAAGTTCATCGTCTGGTGCCTCCACCCACCTATCGAGGTTTGCACGA
TTTACCCCGCGTTCTCTTCAAATTGCTTTCGGCAGTGATGGGAAGAGGGA
TTAGCTTATTGGAACGTGAACGGAAATACGGACAAGCGGTGCATTATCTG
AGGATTGTGCTAGAGGGAACTTCGAATTTGAGGTGGTCGTTAAGAGGATA
TTTTCATGTACGGTTAGTGCTGGATTTGGGCCATAGCAACCGACCGGGGG
ATGCGTTAGAGGCATGTGAAAGCGCCTTGGCGGATGCGTGCGTGGATGGC
GAGGACCGGTTGTTCCTACAAGGGAAATGCCAGGCCTTGGCCGTCCCTCC
CCGGAGGTGGAAGAAGCCGGTGTTTCCCGTGTTGATGTCTGCACCTGTTG
TGAGACTTGAGATGGCCATGGTGCAGAGGAGGAGAGAGAGGGATGGGGAG
GGGAAGATCAGCAGCCTGGAGGATGGGGTGCTGGCATGCTTGCTGGAGGA
GGAGGAGGAGGAGGGGGAAGGAAGGTGGGGAAGCCATGAGGAGGAAGAAG
ATGGTGTGACGGTGAAAGCGAAAGTTGACGAACGAGTGGGAGGAAGAGCG
GGGAGGCGGGGAGGGAGGAAGGAAGGAAATTGTCAATGGCAAGGGGCGCA
CTGTGAGAACAATATCATCTTGACGCTCTTTGGACTTCTCTGCTGGGACG
TGCTATGGCTGGCGACGGCAGAGACGGAACGGCAGCAGCAGCAGCAGTCC
TCTCCCGCCACCTTTACGAGGAGCAGCAGCAACAGTAGCGAAAGCAGTAC
TAGCAGCAGCAAGAGCAGCAGCAGCCCCAGTGAATACCAACATGCTCCCT
CCGACCTCATGCTCTGTCAGGAGTTTTTACTCTCCCCCGCGCGTCGACGG
GCCTTGAACGAAGTGCTCGCTCGAGTCAAGCGTGGGGAAGCACCAGCAAT
GCTCGCGGAGACGCATGGGCAACATGCGGGCACTCTTTGTTTAGGCGTTG
ATTGGGTCTCATTTCCTTTAGAAACATTACAGACCATCGCCCAAGGCTTC
GGGCCACCGGCACTGATGCTGCTGTGTGAAACTCTGGCGAAGGACTACTC
CCTCCTCGCACACGGCTTTCCAGATCTGATGCTCTGGAAGGAGGGAGGGA
AGGAGGTGCGTTTGGTGGAGGTGAAAGGGCCGGGGGATAGTTTGAGTTGG
GCACAAAAGTATTGGATTGATAAATTGGTAGGAGTTGGGGTGAGGGTTGA
GGTGGCAAGGGTTGTGAATGGTGAGGAGGAAAAGGATGGGAAATGGGATG
CAAGAGGAGGAAAACGAGGACGACGAGTAGGGGGAGGACGGAAAGGGAGA
GGAGGAGGAGGACGGGGAGGAGGATGGCGGACAGGAGCAGAGGTCAGGAA
AGGGAGGGAGTAAATAACGTACGGTAGGGGGAAGGGGTGTAACGATCTAT
GTACACGTATCTGCGCATGTATTGAGAAGTGAGGGGGAAAGAGGAATGAT
GGAGAAGAAAAGAGTAGATTATCTTCTTCTGTCAAAAGAACGAGAGGCAC
AACCTCGAAAAATACCTAAGTGATGTACCAGGCGAAAAGCGTGTTGAATG
AATGAAAGGCTCGTCATATTTCTGCGTTTCCGTTTCTCGGCCTCCCTGAT
AGTTCAGTCAAAATGGAGACCTTCGTGTAAGCCGTTTGTGCGTCGTATGA
GCATGGATTAAGGGCAACGGGGCAACGACACGTGCGAATGTACCGGCGTC
GTTATGGTTTGTCCTCATGGATGCAAACCCTGGCTTGGGGCAAGAGGATG
GTACTGGCGGTATGTTTTCTAGAGAAGCAAGGAGGCAGGAGGTTGAAACC
GAGTAACACACACACACACACACACACACACACACACACACACACA

protein sequence of jgi.p|Nanoce1779_2|613545

>mRNA_10668-protein ID=mRNA_10668-protein|Name=jgi.p|Nanoce1779_2|613545|organism=Nannochloropsis oceanica|type=polypeptide|length=622bp
MVPTIAASSSSSSQVLIELSDEEEEEKSGTGNHHHHHQPQQQRHISTATR
SPSSFQPLGPSFIPPSYAQLFDSSLSLADAFEQAVVAGDAVTAYSCLHAV
SNLFLPPPPFQEEQAHEQKRDRTPLLSSLSTLEEDRASSSSGGGCSGDGR
GVEVHRLVPPPTYRGLHDLPRVLFKLLSAVMGRGISLLERERKYGQAVHY
LRIVLEGTSNLRWSLRGYFHVRLVLDLGHSNRPGDALEACESALADACVD
GEDRLFLQGKCQALAVPPRRWKKPVFPVLMSAPVVRLEMAMVQRRRERDG
EGKISSLEDGVLACLLEEEEEEGEGRWGSHEEEEDGVTVKAKVDERVGGR
AGRRGGRKEGNCQWQGAHCENNIILTLFGLLCWDVLWLATAETERQQQQQ
SSPATFTRSSSNSSESSTSSSKSSSSPSEYQHAPSDLMLCQEFLLSPARR
RALNEVLARVKRGEAPAMLAETHGQHAGTLCLGVDWVSFPLETLQTIAQG
FGPPALMLLCETLAKDYSLLAHGFPDLMLWKEGGKEVRLVEVKGPGDSLS
WAQKYWIDKLVGVGVRVEVARVVNGEEEKDGKWDARGGKRGRRVGGGRKG
RGGGGRGGGWRTGAEVRKGRE*

mRNA from alignment at scaffold_76:861..3306+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10668 ID=mRNA_10668|Name=jgi.p|Nanoce1779_2|613545|organism=Nannochloropsis oceanica|type=mRNA|length=2446bp|location=Sequence derived from alignment at scaffold_76:861..3306+ (Nannochloropsis oceanica)
GTTATTGTGGAATGATTTAGGAGGGCTGCGGGTTGTTGGCAGAAAAGGAG
TAGGGGATGGTGGTGGTGGTGGTGGTAGAGGAGGGGAAGGGTGGGGAATG
GTGCCAACCATTGCTGCATCCTCATCGTCCTCGTCGCAGGTATTGATTGA
GCTTAGTGATGAAGAGGAGGAAGAGAAAAGTGGCACTGGGAATCATCATC
ATCATCATCAGCCGCAGCAGCAGCGACATATCTCTACAGCAACTCGCTCG
CCGTCATCCTTCCAACCCCTCGGTCCTTCCTTCATCCCTCCTTCCTACGC
CCAGCTCTTCGATTCCTCCTTATCCCTAGCTGACGCGTTCGAGCAAGCCG
TGGTAGCAGGAGACGCAGTGACAGCCTATTCATGCCTCCACGCTGTCTCG
AATCTATTCCTCCCTCCTCCTCCTTTTCAGGAGGAGCAAGCGCACGAGCA
GAAACGCGACCGCACACCTTTACTTTCTTCCCTCTCCACTTTAGAAGAAG
ACAGGGCCTCTAGCAGCAGCGGCGGCGGTTGTAGTGGTGATGGTCGAGGG
GTGGAAGTTCATCGTCTGGTGCCTCCACCCACCTATCGAGGTTTGCACGA
TTTACCCCGCGTTCTCTTCAAATTGCTTTCGGCAGTGATGGGAAGAGGGA
TTAGCTTATTGGAACGTGAACGGAAATACGGACAAGCGGTGCATTATCTG
AGGATTGTGCTAGAGGGAACTTCGAATTTGAGGTGGTCGTTAAGAGGATA
TTTTCATGTACGGTTAGTGCTGGATTTGGGCCATAGCAACCGACCGGGGG
ATGCGTTAGAGGCATGTGAAAGCGCCTTGGCGGATGCGTGCGTGGATGGC
GAGGACCGGTTGTTCCTACAAGGGAAATGCCAGGCCTTGGCCGTCCCTCC
CCGGAGGTGGAAGAAGCCGGTGTTTCCCGTGTTGATGTCTGCACCTGTTG
TGAGACTTGAGATGGCCATGGTGCAGAGGAGGAGAGAGAGGGATGGGGAG
GGGAAGATCAGCAGCCTGGAGGATGGGGTGCTGGCATGCTTGCTGGAGGA
GGAGGAGGAGGAGGGGGAAGGAAGGTGGGGAAGCCATGAGGAGGAAGAAG
ATGGTGTGACGGTGAAAGCGAAAGTTGACGAACGAGTGGGAGGAAGAGCG
GGGAGGCGGGGAGGGAGGAAGGAAGGAAATTGTCAATGGCAAGGGGCGCA
CTGTGAGAACAATATCATCTTGACGCTCTTTGGACTTCTCTGCTGGGACG
TGCTATGGCTGGCGACGGCAGAGACGGAACGGCAGCAGCAGCAGCAGTCC
TCTCCCGCCACCTTTACGAGGAGCAGCAGCAACAGTAGCGAAAGCAGTAC
TAGCAGCAGCAAGAGCAGCAGCAGCCCCAGTGAATACCAACATGCTCCCT
CCGACCTCATGCTCTGTCAGGAGTTTTTACTCTCCCCCGCGCGTCGACGG
GCCTTGAACGAAGTGCTCGCTCGAGTCAAGCGTGGGGAAGCACCAGCAAT
GCTCGCGGAGACGCATGGGCAACATGCGGGCACTCTTTGTTTAGGCGTTG
ATTGGGTCTCATTTCCTTTAGAAACATTACAGACCATCGCCCAAGGCTTC
GGGCCACCGGCACTGATGCTGCTGTGTGAAACTCTGGCGAAGGACTACTC
CCTCCTCGCACACGGCTTTCCAGATCTGATGCTCTGGAAGGAGGGAGGGA
AGGAGGTGCGTTTGGTGGAGGTGAAAGGGCCGGGGGATAGTTTGAGTTGG
GCACAAAAGTATTGGATTGATAAATTGGTAGGAGTTGGGGTGAGGGTTGA
GGTGGCAAGGGTTGTGAATGGTGAGGAGGAAAAGGATGGGAAATGGGATG
CAAGAGGAGGAAAACGAGGACGACGAGTAGGGGGAGGACGGAAAGGGAGA
GGAGGAGGAGGACGGGGAGGAGGATGGCGGACAGGAGCAGAGGTCAGGAA
AGGGAGGGAGTAAATAACGTACGGTAGGGGGAAGGGGTGTAACGATCTAT
GTACACGTATCTGCGCATGTATTGAGAAGTGAGGGGGAAAGAGGAATGAT
GGAGAAGAAAAGAGTAGATTATCTTCTTCTGTCAAAAGAACGAGAGGCAC
AACCTCGAAAAATACCTAAGTGATGTACCAGGCGAAAAGCGTGTTGAATG
AATGAAAGGCTCGTCATATTTCTGCGTTTCCGTTTCTCGGCCTCCCTGAT
AGTTCAGTCAAAATGGAGACCTTCGTGTAAGCCGTTTGTGCGTCGTATGA
GCATGGATTAAGGGCAACGGGGCAACGACACGTGCGAATGTACCGGCGTC
GTTATGGTTTGTCCTCATGGATGCAAACCCTGGCTTGGGGCAAGAGGATG
GTACTGGCGGTATGTTTTCTAGAGAAGCAAGGAGGCAGGAGGTTGAAACC
GAGTAACACACACACACACACACACACACACACACACACACACACA

Coding sequence (CDS) from alignment at scaffold_76:861..3306+

>mRNA_10668 ID=mRNA_10668|Name=jgi.p|Nanoce1779_2|613545|organism=Nannochloropsis oceanica|type=CDS|length=1866bp|location=Sequence derived from alignment at scaffold_76:861..3306+ (Nannochloropsis oceanica)
ATGGTGCCAACCATTGCTGCATCCTCATCGTCCTCGTCGCAGGTATTGAT
TGAGCTTAGTGATGAAGAGGAGGAAGAGAAAAGTGGCACTGGGAATCATC
ATCATCATCATCAGCCGCAGCAGCAGCGACATATCTCTACAGCAACTCGC
TCGCCGTCATCCTTCCAACCCCTCGGTCCTTCCTTCATCCCTCCTTCCTA
CGCCCAGCTCTTCGATTCCTCCTTATCCCTAGCTGACGCGTTCGAGCAAG
CCGTGGTAGCAGGAGACGCAGTGACAGCCTATTCATGCCTCCACGCTGTC
TCGAATCTATTCCTCCCTCCTCCTCCTTTTCAGGAGGAGCAAGCGCACGA
GCAGAAACGCGACCGCACACCTTTACTTTCTTCCCTCTCCACTTTAGAAG
AAGACAGGGCCTCTAGCAGCAGCGGCGGCGGTTGTAGTGGTGATGGTCGA
GGGGTGGAAGTTCATCGTCTGGTGCCTCCACCCACCTATCGAGGTTTGCA
CGATTTACCCCGCGTTCTCTTCAAATTGCTTTCGGCAGTGATGGGAAGAG
GGATTAGCTTATTGGAACGTGAACGGAAATACGGACAAGCGGTGCATTAT
CTGAGGATTGTGCTAGAGGGAACTTCGAATTTGAGGTGGTCGTTAAGAGG
ATATTTTCATGTACGGTTAGTGCTGGATTTGGGCCATAGCAACCGACCGG
GGGATGCGTTAGAGGCATGTGAAAGCGCCTTGGCGGATGCGTGCGTGGAT
GGCGAGGACCGGTTGTTCCTACAAGGGAAATGCCAGGCCTTGGCCGTCCC
TCCCCGGAGGTGGAAGAAGCCGGTGTTTCCCGTGTTGATGTCTGCACCTG
TTGTGAGACTTGAGATGGCCATGGTGCAGAGGAGGAGAGAGAGGGATGGG
GAGGGGAAGATCAGCAGCCTGGAGGATGGGGTGCTGGCATGCTTGCTGGA
GGAGGAGGAGGAGGAGGGGGAAGGAAGGTGGGGAAGCCATGAGGAGGAAG
AAGATGGTGTGACGGTGAAAGCGAAAGTTGACGAACGAGTGGGAGGAAGA
GCGGGGAGGCGGGGAGGGAGGAAGGAAGGAAATTGTCAATGGCAAGGGGC
GCACTGTGAGAACAATATCATCTTGACGCTCTTTGGACTTCTCTGCTGGG
ACGTGCTATGGCTGGCGACGGCAGAGACGGAACGGCAGCAGCAGCAGCAG
TCCTCTCCCGCCACCTTTACGAGGAGCAGCAGCAACAGTAGCGAAAGCAG
TACTAGCAGCAGCAAGAGCAGCAGCAGCCCCAGTGAATACCAACATGCTC
CCTCCGACCTCATGCTCTGTCAGGAGTTTTTACTCTCCCCCGCGCGTCGA
CGGGCCTTGAACGAAGTGCTCGCTCGAGTCAAGCGTGGGGAAGCACCAGC
AATGCTCGCGGAGACGCATGGGCAACATGCGGGCACTCTTTGTTTAGGCG
TTGATTGGGTCTCATTTCCTTTAGAAACATTACAGACCATCGCCCAAGGC
TTCGGGCCACCGGCACTGATGCTGCTGTGTGAAACTCTGGCGAAGGACTA
CTCCCTCCTCGCACACGGCTTTCCAGATCTGATGCTCTGGAAGGAGGGAG
GGAAGGAGGTGCGTTTGGTGGAGGTGAAAGGGCCGGGGGATAGTTTGAGT
TGGGCACAAAAGTATTGGATTGATAAATTGGTAGGAGTTGGGGTGAGGGT
TGAGGTGGCAAGGGTTGTGAATGGTGAGGAGGAAAAGGATGGGAAATGGG
ATGCAAGAGGAGGAAAACGAGGACGACGAGTAGGGGGAGGACGGAAAGGG
AGAGGAGGAGGAGGACGGGGAGGAGGATGGCGGACAGGAGCAGAGGTCAG
GAAAGGGAGGGAGTAA

Synonyms

Publications