jgi.p|Nanoce1779_2|511535, mRNA_10680 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|511535
Unique NamemRNA_10680
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length231
Alignment locationscaffold_76:22290..22520 -

Link to JBrowse

Properties
Property NameValue
TranscriptId511621
TrackFilteredModels2
ProteinId511535
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:22290..22520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|511535gene_10680Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10680CDS_10680Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|511535mRNA_10680-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10680 ID=mRNA_10680|Name=jgi.p|Nanoce1779_2|511535|organism=Nannochloropsis oceanica|type=mRNA|length=231bp
ATGAAGGACGGGAAGTACCGCAAAGTCGTCCTAGCACGTGCCGCACACTT
CACTTTTCCCCAGAAACCTCGTCCATTGGATTTAGTCTTGCGCCTTCGGG
ATCACTACGGGTACTTGTTTTGTTTGCAGTTGGATGCAGACAGGGCCTTC
CTGGGGTGTACTCCTGAGCAGCTTTTTCGGATTTCTGGGGGGACGATCTC
GACAGAGGCCTTGGCAGGGACAAGGCCGCGA
back to top

protein sequence of jgi.p|Nanoce1779_2|511535

>mRNA_10680-protein ID=mRNA_10680-protein|Name=jgi.p|Nanoce1779_2|511535|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MKDGKYRKVVLARAAHFTFPQKPRPLDLVLRLRDHYGYLFCLQLDADRAF
LGCTPEQLFRISGGTISTEALAGTRPR
back to top

mRNA from alignment at scaffold_76:22290..22520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10680 ID=mRNA_10680|Name=jgi.p|Nanoce1779_2|511535|organism=Nannochloropsis oceanica|type=mRNA|length=231bp|location=Sequence derived from alignment at scaffold_76:22290..22520- (Nannochloropsis oceanica)
ATGAAGGACGGGAAGTACCGCAAAGTCGTCCTAGCACGTGCCGCACACTT
CACTTTTCCCCAGAAACCTCGTCCATTGGATTTAGTCTTGCGCCTTCGGG
ATCACTACGGGTACTTGTTTTGTTTGCAGTTGGATGCAGACAGGGCCTTC
CTGGGGTGTACTCCTGAGCAGCTTTTTCGGATTTCTGGGGGGACGATCTC
GACAGAGGCCTTGGCAGGGACAAGGCCGCGA
back to top

Coding sequence (CDS) from alignment at scaffold_76:22290..22520-

>mRNA_10680 ID=mRNA_10680|Name=jgi.p|Nanoce1779_2|511535|organism=Nannochloropsis oceanica|type=CDS|length=231bp|location=Sequence derived from alignment at scaffold_76:22290..22520- (Nannochloropsis oceanica)
ATGAAGGACGGGAAGTACCGCAAAGTCGTCCTAGCACGTGCCGCACACTT
CACTTTTCCCCAGAAACCTCGTCCATTGGATTTAGTCTTGCGCCTTCGGG
ATCACTACGGGTACTTGTTTTGTTTGCAGTTGGATGCAGACAGGGCCTTC
CTGGGGTGTACTCCTGAGCAGCTTTTTCGGATTTCTGGGGGGACGATCTC
GACAGAGGCCTTGGCAGGGACAAGGCCGCGA
back to top
Synonyms
Publications