jgi.p|Nanoce1779_2|613546, mRNA_10669 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613546
Unique NamemRNA_10669
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length724
Alignment locationscaffold_76:3790..4594 +

Link to JBrowse

Properties
Property NameValue
TranscriptId613632
TrackFilteredModels2
ProteinId613546
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:3790..4594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613546gene_10669Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613546mRNA_10669-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10669CDS_10669Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10669 ID=mRNA_10669|Name=jgi.p|Nanoce1779_2|613546|organism=Nannochloropsis oceanica|type=mRNA|length=724bp
ACACACACACACACACACACACACCACTTATACAGGCACATGAGGGCAGA
GAAGCTTCCAGCGCTGCTGGTGCTGCTGCTGAGCTTGGTTGGCTCGAGCA
CGAGTTGGCATCAGCGCTTCTCCCATAGACCTTCGACAACGCGACACATA
CCAGAGAGGTCACGTGTCTCAGCATTTTCTCCTCTGTGGGGGACGACACC
CTCAAACCCCAAAAGCACATCTACACCCATCACTCCCTCAACCTCGCCCT
TCGCACCTCACGAGCTCCTCGAAGGCGACGTCGTCGAGTACCGGATTACC
GAGGCTCAGCGCAGCAAAGGACAGTTGCCACCCGGAGATACACGGTTGCT
TGGTTTGGGCGTCATTAATCAGTTCATGCACATTCACCCGCTGTGTCGAC
GGAGCCCGGAGTCCGAAGAACTCTTCTACGACGAGGACCAAGACGCATTA
GAAGAAGACGTGCCAGGCCTTGTTATACGGGTGCTTAGTCATGTGTGGTA
TCAGCAGCGATGCGTTGAAGATCGAAAAATCAATCCGCATGGGGAAGAGG
CTGAGGATATGTACATTGTGGAGGAGGGATTGAGTGACGGGTGTGGGCCC
GCGGAGCGGTACCGTGTGGTTTAAGGAGAAAGGAGGGATGGGGAGAATGT
GAGGCAAATGTTTTAGTATTTGCTTAGCAGGTCTATGTGTGAATTAATAG
GAGTCAAAAATAAGTAAATACTTG
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protein sequence of jgi.p|Nanoce1779_2|613546

>mRNA_10669-protein ID=mRNA_10669-protein|Name=jgi.p|Nanoce1779_2|613546|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MRAEKLPALLVLLLSLVGSSTSWHQRFSHRPSTTRHIPERSRVSAFSPLW
GTTPSNPKSTSTPITPSTSPFAPHELLEGDVVEYRITEAQRSKGQLPPGD
TRLLGLGVINQFMHIHPLCRRSPESEELFYDEDQDALEEDVPGLVIRVLS
HVWYQQRCVEDRKINPHGEEAEDMYIVEEGLSDGCGPAERYRVV*
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mRNA from alignment at scaffold_76:3790..4594+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10669 ID=mRNA_10669|Name=jgi.p|Nanoce1779_2|613546|organism=Nannochloropsis oceanica|type=mRNA|length=805bp|location=Sequence derived from alignment at scaffold_76:3790..4594+ (Nannochloropsis oceanica)
ACACACACACACACACACACACACCACTTATACAGGCACATGAGGGCAGA
GAAGCTTCCAGCGCTGCTGGTGCTGCTGCTGAGCTTGGTTGGCTCGAGCA
CGAGGTAAGAACCGAAAAGCCAAGTTAATACGATAATCCATTTCGACATT
CATACACGACCTGCACGTCACTCGCACCCCCCCAGTTGGCATCAGCGCTT
CTCCCATAGACCTTCGACAACGCGACACATACCAGAGAGGTCACGTGTCT
CAGCATTTTCTCCTCTGTGGGGGACGACACCCTCAAACCCCAAAAGCACA
TCTACACCCATCACTCCCTCAACCTCGCCCTTCGCACCTCACGAGCTCCT
CGAAGGCGACGTCGTCGAGTACCGGATTACCGAGGCTCAGCGCAGCAAAG
GACAGTTGCCACCCGGAGATACACGGTTGCTTGGTTTGGGCGTCATTAAT
CAGTTCATGCACATTCACCCGCTGTGTCGACGGAGCCCGGAGTCCGAAGA
ACTCTTCTACGACGAGGACCAAGACGCATTAGAAGAAGACGTGCCAGGCC
TTGTTATACGGGTGCTTAGTCATGTGTGGTATCAGCAGCGATGCGTTGAA
GATCGAAAAATCAATCCGCATGGGGAAGAGGCTGAGGATATGTACATTGT
GGAGGAGGGATTGAGTGACGGGTGTGGGCCCGCGGAGCGGTACCGTGTGG
TTTAAGGAGAAAGGAGGGATGGGGAGAATGTGAGGCAAATGTTTTAGTAT
TTGCTTAGCAGGTCTATGTGTGAATTAATAGGAGTCAAAAATAAGTAAAT
ACTTG
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Coding sequence (CDS) from alignment at scaffold_76:3790..4594+

>mRNA_10669 ID=mRNA_10669|Name=jgi.p|Nanoce1779_2|613546|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_76:3790..4594+ (Nannochloropsis oceanica)
ATGAGGGCAGAGAAGCTTCCAGCGCTGCTGGTGCTGCTGCTGAGCTTGGT
TGGCTCGAGCACGAGTTGGCATCAGCGCTTCTCCCATAGACCTTCGACAA
CGCGACACATACCAGAGAGGTCACGTGTCTCAGCATTTTCTCCTCTGTGG
GGGACGACACCCTCAAACCCCAAAAGCACATCTACACCCATCACTCCCTC
AACCTCGCCCTTCGCACCTCACGAGCTCCTCGAAGGCGACGTCGTCGAGT
ACCGGATTACCGAGGCTCAGCGCAGCAAAGGACAGTTGCCACCCGGAGAT
ACACGGTTGCTTGGTTTGGGCGTCATTAATCAGTTCATGCACATTCACCC
GCTGTGTCGACGGAGCCCGGAGTCCGAAGAACTCTTCTACGACGAGGACC
AAGACGCATTAGAAGAAGACGTGCCAGGCCTTGTTATACGGGTGCTTAGT
CATGTGTGGTATCAGCAGCGATGCGTTGAAGATCGAAAAATCAATCCGCA
TGGGGAAGAGGCTGAGGATATGTACATTGTGGAGGAGGGATTGAGTGACG
GGTGTGGGCCCGCGGAGCGGTACCGTGTGGTTTAAATGAGGGCAGAGAAG
CTTCCAGCGCTGCTGGTGCTGCTGCTGAGCTTGGTTGGCTCGAGCACGAG
TTGGCATCAGCGCTTCTCCCATAGACCTTCGACAACGCGACACATACCAG
AGAGGTCACGTGTCTCAGCATTTTCTCCTCTGTGGGGGACGACACCCTCA
AACCCCAAAAGCACATCTACACCCATCACTCCCTCAACCTCGCCCTTCGC
ACCTCACGAGCTCCTCGAAGGCGACGTCGTCGAGTACCGGATTACCGAGG
CTCAGCGCAGCAAAGGACAGTTGCCACCCGGAGATACACGGTTGCTTGGT
TTGGGCGTCATTAATCAGTTCATGCACATTCACCCGCTGTGTCGACGGAG
CCCGGAGTCCGAAGAACTCTTCTACGACGAGGACCAAGACGCATTAGAAG
AAGACGTGCCAGGCCTTGTTATACGGGTGCTTAGTCATGTGTGGTATCAG
CAGCGATGCGTTGAAGATCGAAAAATCAATCCGCATGGGGAAGAGGCTGA
GGATATGTACATTGTGGAGGAGGGATTGAGTGACGGGTGTGGGCCCGCGG
AGCGGTACCGTGTGGTTTAA
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Synonyms
Publications