jgi.p|Nanoce1779_2|613550, mRNA_10671 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613550
Unique NamemRNA_10671
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length462
Alignment locationscaffold_76:6910..7371 -

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Properties
Property NameValue
TranscriptId613636
TrackFilteredModels2
ProteinId613550
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:6910..7371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613550gene_10671Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613550mRNA_10671-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10671CDS_10671Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10671 ID=mRNA_10671|Name=jgi.p|Nanoce1779_2|613550|organism=Nannochloropsis oceanica|type=mRNA|length=462bp
TCGCTTCTTTCATTCTTGTGGGTTCAGCCATGGCGCTCACAATGACATTA
AAATGTAACACCGTTTTTCTCTTTCTCTTTGGTTTCCAAACGAACTCTGC
CCAAAGTTTTCTTGTTTCATCCAAGTTTGGAATTGAGCTAACACATCCCT
GCTCTCATCCTACCCTGGCCTATAGAGCCTTGGTTGCTGCAGCAGCCTGC
AGCGAGGGCCCATCTCGGACGGATCTTGCACGAGATCAAGAGCGTGTGGC
TGATCAAATGGCATGAGATCCTTGCTTGAGGACATACCTCAACATTATAG
AAGAGACCTTTGTGCCGGTTTTTGCGATCTTCGTGGCCAATTGTATTTAT
CGTGGTCTGGGATGGGGGAGGTCGAGAGTATTGAACGCGAGCGACCGTTG
ATGGTATGATGATTGCTTCACTATGCGAAGCAATGCAAACAACTAATAAC
ACCACGATGTAC
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protein sequence of jgi.p|Nanoce1779_2|613550

>mRNA_10671-protein ID=mRNA_10671-protein|Name=jgi.p|Nanoce1779_2|613550|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MALTMTLKCNTVFLFLFGFQTNSAQSFLVSSKFGIELTHPCSHPTLAYRA
LVAAAACSEGPSRTDLARDQERVADQMA*
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mRNA from alignment at scaffold_76:6910..7371-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10671 ID=mRNA_10671|Name=jgi.p|Nanoce1779_2|613550|organism=Nannochloropsis oceanica|type=mRNA|length=462bp|location=Sequence derived from alignment at scaffold_76:6910..7371- (Nannochloropsis oceanica)
TCGCTTCTTTCATTCTTGTGGGTTCAGCCATGGCGCTCACAATGACATTA
AAATGTAACACCGTTTTTCTCTTTCTCTTTGGTTTCCAAACGAACTCTGC
CCAAAGTTTTCTTGTTTCATCCAAGTTTGGAATTGAGCTAACACATCCCT
GCTCTCATCCTACCCTGGCCTATAGAGCCTTGGTTGCTGCAGCAGCCTGC
AGCGAGGGCCCATCTCGGACGGATCTTGCACGAGATCAAGAGCGTGTGGC
TGATCAAATGGCATGAGATCCTTGCTTGAGGACATACCTCAACATTATAG
AAGAGACCTTTGTGCCGGTTTTTGCGATCTTCGTGGCCAATTGTATTTAT
CGTGGTCTGGGATGGGGGAGGTCGAGAGTATTGAACGCGAGCGACCGTTG
ATGGTATGATGATTGCTTCACTATGCGAAGCAATGCAAACAACTAATAAC
ACCACGATGTAC
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Coding sequence (CDS) from alignment at scaffold_76:6910..7371-

>mRNA_10671 ID=mRNA_10671|Name=jgi.p|Nanoce1779_2|613550|organism=Nannochloropsis oceanica|type=CDS|length=237bp|location=Sequence derived from alignment at scaffold_76:6910..7371- (Nannochloropsis oceanica)
ATGGCGCTCACAATGACATTAAAATGTAACACCGTTTTTCTCTTTCTCTT
TGGTTTCCAAACGAACTCTGCCCAAAGTTTTCTTGTTTCATCCAAGTTTG
GAATTGAGCTAACACATCCCTGCTCTCATCCTACCCTGGCCTATAGAGCC
TTGGTTGCTGCAGCAGCCTGCAGCGAGGGCCCATCTCGGACGGATCTTGC
ACGAGATCAAGAGCGTGTGGCTGATCAAATGGCATGA
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Synonyms
Publications