scaffold_77, scaffold_77 (supercontig) Nannochloropsis oceanica

Overview
Namescaffold_77
Unique Namescaffold_77
Typesupercontig
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length67082
Alignment locationjgi.p|Nanoce1779_2|411143:2335..4187 -
Alignment locationjgi.p|Nanoce1779_2|411143:2335..4187 -
Alignment locationCDS_10944:3583..3738 -
Alignment locationCDS_10944:3276..3449 -
Alignment locationCDS_10944:3074..3140 -
Alignment locationCDS_10944:2577..2959 -
Alignment locationjgi.p|Nanoce1779_2|411797:36879..39085 -
Alignment locationjgi.p|Nanoce1779_2|411797:36879..39085 -
Alignment locationCDS_10955:38920..39034 -
Alignment locationCDS_10955:37271..37707 -
Alignment locationjgi.p|Nanoce1779_2|411923:51174..53445 +
Alignment locationjgi.p|Nanoce1779_2|411923:51174..53445 +
Alignment locationCDS_10960:51408..51489 +
Alignment locationCDS_10960:51588..51736 +
Alignment locationCDS_10960:51918..52025 +
Alignment locationCDS_10960:53089..53313 +
Alignment locationjgi.p|Nanoce1779_2|412437:58051..60864 -
Alignment locationjgi.p|Nanoce1779_2|412437:58051..60864 -
Alignment locationCDS_10962:60755..60832 -
Alignment locationCDS_10962:60442..60528 -
Alignment locationCDS_10962:60218..60235 -
Alignment locationCDS_10962:60038..60157 -
Alignment locationCDS_10962:59780..59866 -
Alignment locationCDS_10962:59479..59551 -
Alignment locationCDS_10962:59081..59201 -
Alignment locationCDS_10962:58843..58921 -
Alignment locationCDS_10962:58616..58718 -
Alignment locationCDS_10962:58188..58447 -
Alignment locationjgi.p|Nanoce1779_2|561228:27956..29509 +
Alignment locationjgi.p|Nanoce1779_2|561228:27956..29509 +
Alignment locationCDS_10951:28000..28016 +
Alignment locationCDS_10951:28171..29260 +
Alignment locationjgi.p|Nanoce1779_2|613652:4586..6808 -
Alignment locationjgi.p|Nanoce1779_2|613652:4586..6808 -
Alignment locationCDS_10945:6124..6801 -
Alignment locationCDS_10945:5690..5881 -
Alignment locationCDS_10945:5458..5508 -
Alignment locationCDS_10945:5044..5161 -
Alignment locationCDS_10945:4834..4913 -
Alignment locationjgi.p|Nanoce1779_2|613657:9379..10559 -
Alignment locationjgi.p|Nanoce1779_2|613657:9379..10559 -
Alignment locationCDS_10947:10270..10530 -
Alignment locationjgi.p|Nanoce1779_2|613661:11988..21574 +
Alignment locationjgi.p|Nanoce1779_2|613661:11988..21574 +
Alignment locationCDS_10948:12047..12084 +
Alignment locationCDS_10948:12596..13001 +
Alignment locationCDS_10948:13233..13355 +
Alignment locationCDS_10948:13661..13775 +
Alignment locationCDS_10948:13944..14068 +
Alignment locationCDS_10948:14235..14343 +
Alignment locationCDS_10948:14517..14617 +
Alignment locationCDS_10948:14784..14862 +
Alignment locationCDS_10948:15058..15201 +
Alignment locationCDS_10948:15369..15456 +
Alignment locationCDS_10948:15667..15761 +
Alignment locationCDS_10948:15956..16107 +
Alignment locationCDS_10948:16287..16459 +
Alignment locationCDS_10948:16699..16861 +
Alignment locationCDS_10948:16970..17059 +
Alignment locationCDS_10948:17161..17298 +
Alignment locationCDS_10948:17494..17601 +
Alignment locationCDS_10948:17732..17791 +
Alignment locationCDS_10948:17974..18021 +
Alignment locationCDS_10948:18161..18316 +
Alignment locationCDS_10948:18570..18674 +
Alignment locationCDS_10948:18823..19096 +
Alignment locationCDS_10948:19283..19374 +
Alignment locationCDS_10948:19604..19775 +
Alignment locationCDS_10948:20185..20288 +
Alignment locationCDS_10948:20500..20655 +
Alignment locationjgi.p|Nanoce1779_2|613679:26624..27423 -
Alignment locationjgi.p|Nanoce1779_2|613679:26624..27423 -
Alignment locationCDS_10950:27118..27360 -
Alignment locationCDS_10950:26919..26994 -
Alignment locationCDS_10950:26634..26749 -
Alignment locationjgi.p|Nanoce1779_2|613682:29635..31454 -
Alignment locationjgi.p|Nanoce1779_2|613682:29635..31454 -
Alignment locationCDS_10952:29987..31399 -
Alignment locationjgi.p|Nanoce1779_2|613684:35429..35987 +
Alignment locationjgi.p|Nanoce1779_2|613684:35429..35987 +
Alignment locationCDS_10954:35589..35870 +
Alignment locationjgi.p|Nanoce1779_2|613688:40650..42812 -
Alignment locationjgi.p|Nanoce1779_2|613688:40650..42812 -
Alignment locationCDS_10956:42526..42800 -
Alignment locationCDS_10956:42206..42269 -
Alignment locationCDS_10956:41929..41991 -
Alignment locationCDS_10956:41749..41818 -
Alignment locationCDS_10956:41536..41608 -
Alignment locationCDS_10956:41343..41400 -
Alignment locationCDS_10956:41004..41108 -
Alignment locationCDS_10956:40759..40860 -
Alignment locationjgi.p|Nanoce1779_2|613689:42759..43401 +
Alignment locationjgi.p|Nanoce1779_2|613689:42759..43401 +
Alignment locationCDS_10957:42910..43169 +
Alignment locationCDS_10957:43212..43317 +
Alignment locationjgi.p|Nanoce1779_2|613692:44221..46952 +
Alignment locationjgi.p|Nanoce1779_2|613692:44221..46952 +
Alignment locationCDS_10958:44429..44746 +
Alignment locationCDS_10958:44879..45030 +
Alignment locationCDS_10958:45190..45286 +
Alignment locationCDS_10958:45368..45426 +
Alignment locationCDS_10958:45573..45628 +
Alignment locationCDS_10958:45815..45882 +
Alignment locationCDS_10958:46177..46230 +
Alignment locationCDS_10958:46519..46731 +
Alignment locationjgi.p|Nanoce1779_2|613700:49284..50303 +
Alignment locationjgi.p|Nanoce1779_2|613700:49284..50303 +
Alignment locationCDS_10959:49508..49513 +
Alignment locationCDS_10959:49908..50032 +
Alignment locationCDS_10959:50153..50201 +
Alignment locationjgi.p|Nanoce1779_2|613714:55073..58049 +
Alignment locationjgi.p|Nanoce1779_2|613714:55073..58049 +
Alignment locationCDS_10961:55105..55285 +
Alignment locationCDS_10961:55373..55502 +
Alignment locationCDS_10961:55697..55836 +
Alignment locationCDS_10961:56055..56221 +
Alignment locationCDS_10961:56341..56451 +
Alignment locationCDS_10961:56630..56699 +
Alignment locationCDS_10961:56855..56931 +
Alignment locationCDS_10961:57057..57161 +
Alignment locationCDS_10961:57265..57347 +
Alignment locationCDS_10961:57483..57604 +
Alignment locationCDS_10961:57738..57970 +
Alignment locationjgi.p|Nanoce1779_2|634404:32227..34248 -
Alignment locationjgi.p|Nanoce1779_2|634404:32227..34248 -
Alignment locationCDS_10953:34134..34163 -
Alignment locationCDS_10953:33903..34016 -
Alignment locationCDS_10953:33644..33730 -
Alignment locationCDS_10953:33323..33460 -
Alignment locationCDS_10953:33055..33159 -
Alignment locationCDS_10953:32400..32906 -
Alignment locationjgi.p|Nanoce1779_2|643673:7374..10030 +
Alignment locationjgi.p|Nanoce1779_2|643673:7374..10030 +
Alignment locationCDS_10946:7374..7518 +
Alignment locationCDS_10946:7774..7840 +
Alignment locationCDS_10946:8058..8385 +
Alignment locationCDS_10946:8644..8712 +
Alignment locationCDS_10946:8818..9118 +
Alignment locationCDS_10946:9292..9377 +
Alignment locationCDS_10946:9641..9754 +
Alignment locationCDS_10946:9848..10030 +
Alignment locationjgi.p|Nanoce1779_2|675135:21863..25989 -
Alignment locationjgi.p|Nanoce1779_2|675135:21863..25989 -
Alignment locationCDS_10949:25303..25952 -
Alignment locationCDS_10949:25069..25148 -
Alignment locationCDS_10949:24680..24724 -
Alignment locationCDS_10949:24422..24501 -
Alignment locationCDS_10949:24217..24337 -
Alignment locationCDS_10949:24015..24085 -
Alignment locationCDS_10949:23692..23807 -
Alignment locationCDS_10949:23450..23533 -
Alignment locationCDS_10949:23274..23326 -
Alignment locationCDS_10949:22666..22868 -
Alignment locationCDS_10949:22195..22530 -
Alignment locationjgi.p|Nanoce1779_2|411143:2577..3738 -
Alignment locationjgi.p|Nanoce1779_2|411797:37271..39034 -
Alignment locationjgi.p|Nanoce1779_2|411923:51408..53313 +
Alignment locationjgi.p|Nanoce1779_2|412437:58188..60832 -
Alignment locationjgi.p|Nanoce1779_2|561228:28000..29260 +
Alignment locationjgi.p|Nanoce1779_2|613652:4834..6801 -
Alignment locationjgi.p|Nanoce1779_2|613657:10270..10530 -
Alignment locationjgi.p|Nanoce1779_2|613661:12047..20655 +
Alignment locationjgi.p|Nanoce1779_2|613679:26634..27360 -
Alignment locationjgi.p|Nanoce1779_2|613682:29987..31399 -
Alignment locationjgi.p|Nanoce1779_2|613684:35589..35870 +
Alignment locationjgi.p|Nanoce1779_2|613688:40759..42800 -
Alignment locationjgi.p|Nanoce1779_2|613689:42910..43317 +
Alignment locationjgi.p|Nanoce1779_2|613692:44429..46731 +
Alignment locationjgi.p|Nanoce1779_2|613700:49508..50201 +
Alignment locationjgi.p|Nanoce1779_2|613714:55105..57970 +
Alignment locationjgi.p|Nanoce1779_2|634404:32400..34163 -
Alignment locationjgi.p|Nanoce1779_2|643673:7374..10030 +
Alignment locationjgi.p|Nanoce1779_2|675135:22195..25952 -
Alignment locationncniL099:2336..60864 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
jgi.p|Nanoce1779_2|411143genejgi.p|Nanoce1779_2|411143:2335..4187 -
jgi.p|Nanoce1779_2|411143mRNAjgi.p|Nanoce1779_2|411143:2335..4187 -
CDS_10944CDSCDS_10944:3583..3738 -
CDS_10944CDSCDS_10944:3276..3449 -
CDS_10944CDSCDS_10944:3074..3140 -
CDS_10944CDSCDS_10944:2577..2959 -
jgi.p|Nanoce1779_2|411797genejgi.p|Nanoce1779_2|411797:36879..39085 -
jgi.p|Nanoce1779_2|411797mRNAjgi.p|Nanoce1779_2|411797:36879..39085 -
CDS_10955CDSCDS_10955:38920..39034 -
CDS_10955CDSCDS_10955:37271..37707 -
jgi.p|Nanoce1779_2|411923genejgi.p|Nanoce1779_2|411923:51174..53445 +
jgi.p|Nanoce1779_2|411923mRNAjgi.p|Nanoce1779_2|411923:51174..53445 +
CDS_10960CDSCDS_10960:51408..51489 +
CDS_10960CDSCDS_10960:51588..51736 +
CDS_10960CDSCDS_10960:51918..52025 +
CDS_10960CDSCDS_10960:53089..53313 +
jgi.p|Nanoce1779_2|412437genejgi.p|Nanoce1779_2|412437:58051..60864 -
jgi.p|Nanoce1779_2|412437mRNAjgi.p|Nanoce1779_2|412437:58051..60864 -
CDS_10962CDSCDS_10962:60755..60832 -
CDS_10962CDSCDS_10962:60442..60528 -
CDS_10962CDSCDS_10962:60218..60235 -
CDS_10962CDSCDS_10962:60038..60157 -
CDS_10962CDSCDS_10962:59780..59866 -
CDS_10962CDSCDS_10962:59479..59551 -
CDS_10962CDSCDS_10962:59081..59201 -
CDS_10962CDSCDS_10962:58843..58921 -
CDS_10962CDSCDS_10962:58616..58718 -
CDS_10962CDSCDS_10962:58188..58447 -
jgi.p|Nanoce1779_2|561228genejgi.p|Nanoce1779_2|561228:27956..29509 +
jgi.p|Nanoce1779_2|561228mRNAjgi.p|Nanoce1779_2|561228:27956..29509 +
CDS_10951CDSCDS_10951:28000..28016 +
CDS_10951CDSCDS_10951:28171..29260 +
jgi.p|Nanoce1779_2|613652genejgi.p|Nanoce1779_2|613652:4586..6808 -
jgi.p|Nanoce1779_2|613652mRNAjgi.p|Nanoce1779_2|613652:4586..6808 -
CDS_10945CDSCDS_10945:6124..6801 -
CDS_10945CDSCDS_10945:5690..5881 -
CDS_10945CDSCDS_10945:5458..5508 -
CDS_10945CDSCDS_10945:5044..5161 -
CDS_10945CDSCDS_10945:4834..4913 -
jgi.p|Nanoce1779_2|613657genejgi.p|Nanoce1779_2|613657:9379..10559 -
jgi.p|Nanoce1779_2|613657mRNAjgi.p|Nanoce1779_2|613657:9379..10559 -
CDS_10947CDSCDS_10947:10270..10530 -
jgi.p|Nanoce1779_2|613661genejgi.p|Nanoce1779_2|613661:11988..21574 +
jgi.p|Nanoce1779_2|613661mRNAjgi.p|Nanoce1779_2|613661:11988..21574 +
CDS_10948CDSCDS_10948:12047..12084 +
CDS_10948CDSCDS_10948:12596..13001 +
CDS_10948CDSCDS_10948:13233..13355 +
CDS_10948CDSCDS_10948:13661..13775 +
CDS_10948CDSCDS_10948:13944..14068 +
CDS_10948CDSCDS_10948:14235..14343 +
CDS_10948CDSCDS_10948:14517..14617 +
CDS_10948CDSCDS_10948:14784..14862 +
CDS_10948CDSCDS_10948:15058..15201 +
CDS_10948CDSCDS_10948:15369..15456 +
CDS_10948CDSCDS_10948:15667..15761 +
CDS_10948CDSCDS_10948:15956..16107 +
CDS_10948CDSCDS_10948:16287..16459 +
CDS_10948CDSCDS_10948:16699..16861 +
CDS_10948CDSCDS_10948:16970..17059 +
CDS_10948CDSCDS_10948:17161..17298 +
CDS_10948CDSCDS_10948:17494..17601 +
CDS_10948CDSCDS_10948:17732..17791 +
CDS_10948CDSCDS_10948:17974..18021 +
CDS_10948CDSCDS_10948:18161..18316 +
CDS_10948CDSCDS_10948:18570..18674 +
CDS_10948CDSCDS_10948:18823..19096 +
CDS_10948CDSCDS_10948:19283..19374 +
CDS_10948CDSCDS_10948:19604..19775 +
CDS_10948CDSCDS_10948:20185..20288 +
CDS_10948CDSCDS_10948:20500..20655 +
jgi.p|Nanoce1779_2|613679genejgi.p|Nanoce1779_2|613679:26624..27423 -
jgi.p|Nanoce1779_2|613679mRNAjgi.p|Nanoce1779_2|613679:26624..27423 -
CDS_10950CDSCDS_10950:27118..27360 -
CDS_10950CDSCDS_10950:26919..26994 -
CDS_10950CDSCDS_10950:26634..26749 -
jgi.p|Nanoce1779_2|613682genejgi.p|Nanoce1779_2|613682:29635..31454 -
jgi.p|Nanoce1779_2|613682mRNAjgi.p|Nanoce1779_2|613682:29635..31454 -
CDS_10952CDSCDS_10952:29987..31399 -
jgi.p|Nanoce1779_2|613684genejgi.p|Nanoce1779_2|613684:35429..35987 +
jgi.p|Nanoce1779_2|613684mRNAjgi.p|Nanoce1779_2|613684:35429..35987 +
CDS_10954CDSCDS_10954:35589..35870 +
jgi.p|Nanoce1779_2|613688genejgi.p|Nanoce1779_2|613688:40650..42812 -
jgi.p|Nanoce1779_2|613688mRNAjgi.p|Nanoce1779_2|613688:40650..42812 -
CDS_10956CDSCDS_10956:42526..42800 -
CDS_10956CDSCDS_10956:42206..42269 -
CDS_10956CDSCDS_10956:41929..41991 -
CDS_10956CDSCDS_10956:41749..41818 -
CDS_10956CDSCDS_10956:41536..41608 -
CDS_10956CDSCDS_10956:41343..41400 -
CDS_10956CDSCDS_10956:41004..41108 -
CDS_10956CDSCDS_10956:40759..40860 -
jgi.p|Nanoce1779_2|613689genejgi.p|Nanoce1779_2|613689:42759..43401 +
jgi.p|Nanoce1779_2|613689mRNAjgi.p|Nanoce1779_2|613689:42759..43401 +
CDS_10957CDSCDS_10957:42910..43169 +
CDS_10957CDSCDS_10957:43212..43317 +
jgi.p|Nanoce1779_2|613692genejgi.p|Nanoce1779_2|613692:44221..46952 +
jgi.p|Nanoce1779_2|613692mRNAjgi.p|Nanoce1779_2|613692:44221..46952 +
CDS_10958CDSCDS_10958:44429..44746 +
CDS_10958CDSCDS_10958:44879..45030 +
CDS_10958CDSCDS_10958:45190..45286 +
CDS_10958CDSCDS_10958:45368..45426 +
CDS_10958CDSCDS_10958:45573..45628 +
CDS_10958CDSCDS_10958:45815..45882 +
CDS_10958CDSCDS_10958:46177..46230 +
CDS_10958CDSCDS_10958:46519..46731 +
jgi.p|Nanoce1779_2|613700genejgi.p|Nanoce1779_2|613700:49284..50303 +
jgi.p|Nanoce1779_2|613700mRNAjgi.p|Nanoce1779_2|613700:49284..50303 +
CDS_10959CDSCDS_10959:49508..49513 +
CDS_10959CDSCDS_10959:49908..50032 +
CDS_10959CDSCDS_10959:50153..50201 +
jgi.p|Nanoce1779_2|613714genejgi.p|Nanoce1779_2|613714:55073..58049 +
jgi.p|Nanoce1779_2|613714mRNAjgi.p|Nanoce1779_2|613714:55073..58049 +
CDS_10961CDSCDS_10961:55105..55285 +
CDS_10961CDSCDS_10961:55373..55502 +
CDS_10961CDSCDS_10961:55697..55836 +
CDS_10961CDSCDS_10961:56055..56221 +
CDS_10961CDSCDS_10961:56341..56451 +
CDS_10961CDSCDS_10961:56630..56699 +
CDS_10961CDSCDS_10961:56855..56931 +
CDS_10961CDSCDS_10961:57057..57161 +
CDS_10961CDSCDS_10961:57265..57347 +
CDS_10961CDSCDS_10961:57483..57604 +
CDS_10961CDSCDS_10961:57738..57970 +
jgi.p|Nanoce1779_2|634404genejgi.p|Nanoce1779_2|634404:32227..34248 -
jgi.p|Nanoce1779_2|634404mRNAjgi.p|Nanoce1779_2|634404:32227..34248 -
CDS_10953CDSCDS_10953:34134..34163 -
CDS_10953CDSCDS_10953:33903..34016 -
CDS_10953CDSCDS_10953:33644..33730 -
CDS_10953CDSCDS_10953:33323..33460 -
CDS_10953CDSCDS_10953:33055..33159 -
CDS_10953CDSCDS_10953:32400..32906 -
jgi.p|Nanoce1779_2|643673genejgi.p|Nanoce1779_2|643673:7374..10030 +
jgi.p|Nanoce1779_2|643673mRNAjgi.p|Nanoce1779_2|643673:7374..10030 +
CDS_10946CDSCDS_10946:7374..7518 +
CDS_10946CDSCDS_10946:7774..7840 +
CDS_10946CDSCDS_10946:8058..8385 +
CDS_10946CDSCDS_10946:8644..8712 +
CDS_10946CDSCDS_10946:8818..9118 +
CDS_10946CDSCDS_10946:9292..9377 +
CDS_10946CDSCDS_10946:9641..9754 +
CDS_10946CDSCDS_10946:9848..10030 +
jgi.p|Nanoce1779_2|675135genejgi.p|Nanoce1779_2|675135:21863..25989 -
jgi.p|Nanoce1779_2|675135mRNAjgi.p|Nanoce1779_2|675135:21863..25989 -
CDS_10949CDSCDS_10949:25303..25952 -
CDS_10949CDSCDS_10949:25069..25148 -
CDS_10949CDSCDS_10949:24680..24724 -
CDS_10949CDSCDS_10949:24422..24501 -
CDS_10949CDSCDS_10949:24217..24337 -
CDS_10949CDSCDS_10949:24015..24085 -
CDS_10949CDSCDS_10949:23692..23807 -
CDS_10949CDSCDS_10949:23450..23533 -
CDS_10949CDSCDS_10949:23274..23326 -
CDS_10949CDSCDS_10949:22666..22868 -
CDS_10949CDSCDS_10949:22195..22530 -
jgi.p|Nanoce1779_2|411143polypeptidejgi.p|Nanoce1779_2|411143:2577..3738 -
jgi.p|Nanoce1779_2|411797polypeptidejgi.p|Nanoce1779_2|411797:37271..39034 -
jgi.p|Nanoce1779_2|411923polypeptidejgi.p|Nanoce1779_2|411923:51408..53313 +
jgi.p|Nanoce1779_2|412437polypeptidejgi.p|Nanoce1779_2|412437:58188..60832 -
jgi.p|Nanoce1779_2|561228polypeptidejgi.p|Nanoce1779_2|561228:28000..29260 +
jgi.p|Nanoce1779_2|613652polypeptidejgi.p|Nanoce1779_2|613652:4834..6801 -
jgi.p|Nanoce1779_2|613657polypeptidejgi.p|Nanoce1779_2|613657:10270..10530 -
jgi.p|Nanoce1779_2|613661polypeptidejgi.p|Nanoce1779_2|613661:12047..20655 +
jgi.p|Nanoce1779_2|613679polypeptidejgi.p|Nanoce1779_2|613679:26634..27360 -
jgi.p|Nanoce1779_2|613682polypeptidejgi.p|Nanoce1779_2|613682:29987..31399 -
jgi.p|Nanoce1779_2|613684polypeptidejgi.p|Nanoce1779_2|613684:35589..35870 +
jgi.p|Nanoce1779_2|613688polypeptidejgi.p|Nanoce1779_2|613688:40759..42800 -
jgi.p|Nanoce1779_2|613689polypeptidejgi.p|Nanoce1779_2|613689:42910..43317 +
jgi.p|Nanoce1779_2|613692polypeptidejgi.p|Nanoce1779_2|613692:44429..46731 +
jgi.p|Nanoce1779_2|613700polypeptidejgi.p|Nanoce1779_2|613700:49508..50201 +
jgi.p|Nanoce1779_2|613714polypeptidejgi.p|Nanoce1779_2|613714:55105..57970 +
jgi.p|Nanoce1779_2|634404polypeptidejgi.p|Nanoce1779_2|634404:32400..34163 -
jgi.p|Nanoce1779_2|643673polypeptidejgi.p|Nanoce1779_2|643673:7374..10030 +
jgi.p|Nanoce1779_2|675135polypeptidejgi.p|Nanoce1779_2|675135:22195..25952 -
ncniL099syntenic_regionncniL099:2336..60864 +
Analyses
This supercontig is derived from or has results from the following analyses
Analysis NameDate Performed
Gennome assembly for N. oceanica CCMP17792018-02-01
Annotated Terms
Homology
Relationships
Sequences
Synonyms
Publications