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Properties
| Property Name | Value |
|---|
| TranscriptId | 634490 |
| Track | FilteredModels2 |
| ProteinId | 634404 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:32227..34248 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10953 ID=mRNA_10953|Name=jgi.p|Nanoce1779_2|634404|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp
AGGAGGAGGAGGAAGAGGAGGAGGAGAACGAAGGCGAGAACGACGCACAG
ACCGACAAGGAGGAAGAGCTGAGCTAGAAAAGCAAATGGTGATTACAGAG
ACTACCATTAGTATGAAAGACATAAGGACAGACGCACTCCTACCCATTCT
GAAACCGCAAGCCTTACTGTACTGGATGCGTGTTGCGATTGCGAACAGCT
GGGCGCAGAACGGGGAGCAGTGGACTGAGATTTTTTCCGAGGAAAATAGT
GGAACTTACAATTGCGAGTGGATGGTGCTCGACGTCACACAGCGTTCCTT
CCACGTGTTGGACCAGGCCCCCGACAAGGTGAAAATCACCGATCACACGC
CTACTCTATTCTCTCCGTCCACGTCCCCATTCTCCAATTACTTTGCATCG
TATAATATACCCTCGGACAAAGAGATCTACGATTACCTCGGTTTTGGCCT
CAAGGATCCCCACAAGATCAAGTACATTTTGGAGAAGCATGGGGAGTCCC
CACGTGCTCTCATGCTAGGGGAAGGACAGCGAGAGGTGTCTTCCTTGGGT
GAAATGAAGTACCTCATCCAATACAATGATTATGAGCACGACCCTCGCTC
TATGGGTCATGCCTACTTGGCTGTGGCAGGCCGAGGCGATCTGGAGGCAG
CAAATACAGAAGTTATGTTGGCCAAAGACCTAGAGGACGCGACGGAAAAC
GATCCGCTATTCAGCTCTTCCTCCTCATCTTCGTCCCAATCTCCCCTCTA
TTCGATCAGCCCGTCGCCCGTATTTGCACCGCTGGAAGGGGCGATGGACG
CCAAGGTGGTCTCAGTGCGCGAGGCCTTCTCCAGCCCTGACGGTCATCTG
AGTCTGCACGCTCGCGTTGGACCAACACACGACCAACAAATACCTTTTTG
CTGGGCAGGTCACGAACAAGAGGACGGGGAGACGACAGATAAAGGAACAC
GACCTGCCTGCTTCTGCTTTGCGTGGGAGCGTCTCTCCCCCGGGAAAGTG
CTGGCTGAGGAAATTCAGCGCCAGTATGGGCGACGGTCCTTATTGTTGCG
TGGGGGAAAGGTGTAGGTGAACCATTGTTTGAAAAGGTGCTTCGATGCAC
AATTAAACTGAATTATGCCCTGTATGAATGATTGAGATCAAATTAGGGTT
ATGGTGTACTTAAAAATACGTAGTTGATAAAAAATGTTTCATACTCTTGG
CAACAATTTTGTCTCACTGCTTCTCTTAACTGTGCTGTC back to topprotein sequence of jgi.p|Nanoce1779_2|634404 >mRNA_10953-protein ID=mRNA_10953-protein|Name=jgi.p|Nanoce1779_2|634404|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MVITETTISMKDIRTDALLPILKPQALLYWMRVAIANSWAQNGEQWTEIF
SEENSGTYNCEWMVLDVTQRSFHVLDQAPDKVKITDHTPTLFSPSTSPFS
NYFASYNIPSDKEIYDYLGFGLKDPHKIKYILEKHGESPRALMLGEGQRE
VSSLGEMKYLIQYNDYEHDPRSMGHAYLAVAGRGDLEAANTEVMLAKDLE
DATENDPLFSSSSSSSSQSPLYSISPSPVFAPLEGAMDAKVVSVREAFSS
PDGHLSLHARVGPTHDQQIPFCWAGHEQEDGETTDKGTRPACFCFAWERL
SPGKVLAEEIQRQYGRRSLLLRGGKV* back to topmRNA from alignment at scaffold_77:32227..34248- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10953 ID=mRNA_10953|Name=jgi.p|Nanoce1779_2|634404|organism=Nannochloropsis oceanica|type=mRNA|length=2022bp|location=Sequence derived from alignment at scaffold_77:32227..34248- (Nannochloropsis oceanica)
AGGAGGAGGAGGAAGAGGAGGAGGAGAACGAAGGCGAGAACGACGCACAG
ACCGACAAGGAGGAAGAGCTGAGCTAGAAAAGCAAATGGTGATTACAGAG
ACTACCATTAGTATGGTAAGAGGGGAAAACGCGGGAAGGGAAGGAATGAA
GGAAGGAGGGTTGAACTTCTCAAAATATACAACTCAATACATGCAAGATC
CAAATCCACGCTCTCCGCCTCCACGTTCATAGAAAGACATAAGGACAGAC
GCACTCCTACCCATTCTGAAACCGCAAGCCTTACTGTACTGGATGCGTGT
TGCGATTGCGAACAGCTGGGCGCAGAACGGGGAGCAGTGGACTGAGGTAT
AACACACCCTACTTATTTTCCTTCCTTTGTCCTTTTGGGTCGTATTGGAC
GCGCTTTTGGTATCGAGCACTTCTCAAATCAATCTCCCTAAGATCTCTCT
TTGTATCTGATTTGTCATCCCTCCCTCTGCCCTTTATTGTTTTTCCTCTC
CTTCCCTTAATTTTTCAGATTTTTTCCGAGGAAAATAGTGGAACTTACAA
TTGCGAGTGGATGGTGCTCGACGTCACACAGCGTTCCTTCCACGTGTTGG
ACCAGGTGGGTGAGAGGAGGGAATGGGGAGGAAGGGGAGGAGAGGGAAAG
CGAAGCAAGTGTAGATGAAGTTCGACTCGGCGTGCTTGTATACAGCATGC
TGGCTTCTTTGACTTTCTGATCTACCTCCCTCCCTTCCCTCCTCACTTTC
CTCCTTGCTTCTTCCCCTTCTCTCTATACCCTCTCCAGGCCCCCGACAAG
GTGAAAATCACCGATCACACGCCTACTCTATTCTCTCCGTCCACGTCCCC
ATTCTCCAATTACTTTGCATCGTATAATATACCCTCGGACAAAGAGATCT
ACGATTACCTCGGTTTTGGCCTCAAGGTAAGGTAAAATAGGCGTGAAGGA
GGAACAAAGAGCAGGAGGAAGAAAGAAAAAGAGAAAATGGTCGCATGTTT
ACACAGAGATGTCTACGTGGGCTGTGTCGGTACCAGTATTGATGACGATC
AGTCCGACTCATACAATTCTTATTTTCCCTTCCTCGCAGGATCCCCACAA
GATCAAGTACATTTTGGAGAAGCATGGGGAGTCCCCACGTGCTCTCATGC
TAGGGGAAGGACAGCGAGAGGTGTCTTCCTTGGGTGAAATGAAGGTGAGT
GGAGGAAAAGGGGAGGAGAAAAGGAATCGGATGGGAAAACAGTTCAGTTG
CAGGAAGGACGACGGAAATTAGCACAGAACAGATGCGCTCCCCCAATTGT
CATGTGAAAGGCGTCATAATTGCCGTCTCCTTATTTGCACAGTACCTCAT
CCAATACAATGATTATGAGCACGACCCTCGCTCTATGGGTCATGCCTACT
TGGCTGTGGCAGGCCGAGGCGATCTGGAGGCAGCAAATACAGAAGTTATG
TTGGCCAAAGACCTAGAGGACGCGACGGAAAACGATCCGCTATTCAGCTC
TTCCTCCTCATCTTCGTCCCAATCTCCCCTCTATTCGATCAGCCCGTCGC
CCGTATTTGCACCGCTGGAAGGGGCGATGGACGCCAAGGTGGTCTCAGTG
CGCGAGGCCTTCTCCAGCCCTGACGGTCATCTGAGTCTGCACGCTCGCGT
TGGACCAACACACGACCAACAAATACCTTTTTGCTGGGCAGGTCACGAAC
AAGAGGACGGGGAGACGACAGATAAAGGAACACGACCTGCCTGCTTCTGC
TTTGCGTGGGAGCGTCTCTCCCCCGGGAAAGTGCTGGCTGAGGAAATTCA
GCGCCAGTATGGGCGACGGTCCTTATTGTTGCGTGGGGGAAAGGTGTAGG
TGAACCATTGTTTGAAAAGGTGCTTCGATGCACAATTAAACTGAATTATG
CCCTGTATGAATGATTGAGATCAAATTAGGGTTATGGTGTACTTAAAAAT
ACGTAGTTGATAAAAAATGTTTCATACTCTTGGCAACAATTTTGTCTCAC
TGCTTCTCTTAACTGTGCTGTC back to topCoding sequence (CDS) from alignment at scaffold_77:32227..34248- >mRNA_10953 ID=mRNA_10953|Name=jgi.p|Nanoce1779_2|634404|organism=Nannochloropsis oceanica|type=CDS|length=5886bp|location=Sequence derived from alignment at scaffold_77:32227..34248- (Nannochloropsis oceanica)
TACCTCATCCAATACAATGATTATGAGCACGACCCTCGCTCTATGGGTCA
TGCCTACTTGGCTGTGGCAGGCCGAGGCGATCTGGAGGCAGCAAATACAG
AAGTTATGTTGGCCAAAGACCTAGAGGACGCGACGGAAAACGATCCGCTA
TTCAGCTCTTCCTCCTCATCTTCGTCCCAATCTCCCCTCTATTCGATCAG
CCCGTCGCCCGTATTTGCACCGCTGGAAGGGGCGATGGACGCCAAGGTGG
TCTCAGTGCGCGAGGCCTTCTCCAGCCCTGACGGTCATCTGAGTCTGCAC
GCTCGCGTTGGACCAACACACGACCAACAAATACCTTTTTGCTGGGCAGG
TCACGAACAAGAGGACGGGGAGACGACAGATAAAGGAACACGACCTGCCT
GCTTCTGCTTTGCGTGGGAGCGTCTCTCCCCCGGGAAAGTGCTGGCTGAG
GAAATTCAGCGCCAGTATGGGCGACGGTCCTTATTGTTGCGTGGGGGAAA
GGTGTAGGATCCCCACAAGATCAAGTACATTTTGGAGAAGCATGGGGAGT
CCCCACGTGCTCTCATGCTAGGGGAAGGACAGCGAGAGGTGTCTTCCTTG
GGTGAAATGAAGGCCCCCGACAAGGTGAAAATCACCGATCACACGCCTAC
TCTATTCTCTCCGTCCACGTCCCCATTCTCCAATTACTTTGCATCGTATA
ATATACCCTCGGACAAAGAGATCTACGATTACCTCGGTTTTGGCCTCAAG
ATTTTTTCCGAGGAAAATAGTGGAACTTACAATTGCGAGTGGATGGTGCT
CGACGTCACACAGCGTTCCTTCCACGTGTTGGACCAGAAAGACATAAGGA
CAGACGCACTCCTACCCATTCTGAAACCGCAAGCCTTACTGTACTGGATG
CGTGTTGCGATTGCGAACAGCTGGGCGCAGAACGGGGAGCAGTGGACTGA
GATGGTGATTACAGAGACTACCATTAGTATGTACCTCATCCAATACAATG
ATTATGAGCACGACCCTCGCTCTATGGGTCATGCCTACTTGGCTGTGGCA
GGCCGAGGCGATCTGGAGGCAGCAAATACAGAAGTTATGTTGGCCAAAGA
CCTAGAGGACGCGACGGAAAACGATCCGCTATTCAGCTCTTCCTCCTCAT
CTTCGTCCCAATCTCCCCTCTATTCGATCAGCCCGTCGCCCGTATTTGCA
CCGCTGGAAGGGGCGATGGACGCCAAGGTGGTCTCAGTGCGCGAGGCCTT
CTCCAGCCCTGACGGTCATCTGAGTCTGCACGCTCGCGTTGGACCAACAC
ACGACCAACAAATACCTTTTTGCTGGGCAGGTCACGAACAAGAGGACGGG
GAGACGACAGATAAAGGAACACGACCTGCCTGCTTCTGCTTTGCGTGGGA
GCGTCTCTCCCCCGGGAAAGTGCTGGCTGAGGAAATTCAGCGCCAGTATG
GGCGACGGTCCTTATTGTTGCGTGGGGGAAAGGTGTAGGATCCCCACAAG
ATCAAGTACATTTTGGAGAAGCATGGGGAGTCCCCACGTGCTCTCATGCT
AGGGGAAGGACAGCGAGAGGTGTCTTCCTTGGGTGAAATGAAGGCCCCCG
ACAAGGTGAAAATCACCGATCACACGCCTACTCTATTCTCTCCGTCCACG
TCCCCATTCTCCAATTACTTTGCATCGTATAATATACCCTCGGACAAAGA
GATCTACGATTACCTCGGTTTTGGCCTCAAGATTTTTTCCGAGGAAAATA
GTGGAACTTACAATTGCGAGTGGATGGTGCTCGACGTCACACAGCGTTCC
TTCCACGTGTTGGACCAGAAAGACATAAGGACAGACGCACTCCTACCCAT
TCTGAAACCGCAAGCCTTACTGTACTGGATGCGTGTTGCGATTGCGAACA
GCTGGGCGCAGAACGGGGAGCAGTGGACTGAGATGGTGATTACAGAGACT
ACCATTAGTATGTACCTCATCCAATACAATGATTATGAGCACGACCCTCG
CTCTATGGGTCATGCCTACTTGGCTGTGGCAGGCCGAGGCGATCTGGAGG
CAGCAAATACAGAAGTTATGTTGGCCAAAGACCTAGAGGACGCGACGGAA
AACGATCCGCTATTCAGCTCTTCCTCCTCATCTTCGTCCCAATCTCCCCT
CTATTCGATCAGCCCGTCGCCCGTATTTGCACCGCTGGAAGGGGCGATGG
ACGCCAAGGTGGTCTCAGTGCGCGAGGCCTTCTCCAGCCCTGACGGTCAT
CTGAGTCTGCACGCTCGCGTTGGACCAACACACGACCAACAAATACCTTT
TTGCTGGGCAGGTCACGAACAAGAGGACGGGGAGACGACAGATAAAGGAA
CACGACCTGCCTGCTTCTGCTTTGCGTGGGAGCGTCTCTCCCCCGGGAAA
GTGCTGGCTGAGGAAATTCAGCGCCAGTATGGGCGACGGTCCTTATTGTT
GCGTGGGGGAAAGGTGTAGGATCCCCACAAGATCAAGTACATTTTGGAGA
AGCATGGGGAGTCCCCACGTGCTCTCATGCTAGGGGAAGGACAGCGAGAG
GTGTCTTCCTTGGGTGAAATGAAGGCCCCCGACAAGGTGAAAATCACCGA
TCACACGCCTACTCTATTCTCTCCGTCCACGTCCCCATTCTCCAATTACT
TTGCATCGTATAATATACCCTCGGACAAAGAGATCTACGATTACCTCGGT
TTTGGCCTCAAGATTTTTTCCGAGGAAAATAGTGGAACTTACAATTGCGA
GTGGATGGTGCTCGACGTCACACAGCGTTCCTTCCACGTGTTGGACCAGA
AAGACATAAGGACAGACGCACTCCTACCCATTCTGAAACCGCAAGCCTTA
CTGTACTGGATGCGTGTTGCGATTGCGAACAGCTGGGCGCAGAACGGGGA
GCAGTGGACTGAGATGGTGATTACAGAGACTACCATTAGTATGTACCTCA
TCCAATACAATGATTATGAGCACGACCCTCGCTCTATGGGTCATGCCTAC
TTGGCTGTGGCAGGCCGAGGCGATCTGGAGGCAGCAAATACAGAAGTTAT
GTTGGCCAAAGACCTAGAGGACGCGACGGAAAACGATCCGCTATTCAGCT
CTTCCTCCTCATCTTCGTCCCAATCTCCCCTCTATTCGATCAGCCCGTCG
CCCGTATTTGCACCGCTGGAAGGGGCGATGGACGCCAAGGTGGTCTCAGT
GCGCGAGGCCTTCTCCAGCCCTGACGGTCATCTGAGTCTGCACGCTCGCG
TTGGACCAACACACGACCAACAAATACCTTTTTGCTGGGCAGGTCACGAA
CAAGAGGACGGGGAGACGACAGATAAAGGAACACGACCTGCCTGCTTCTG
CTTTGCGTGGGAGCGTCTCTCCCCCGGGAAAGTGCTGGCTGAGGAAATTC
AGCGCCAGTATGGGCGACGGTCCTTATTGTTGCGTGGGGGAAAGGTGTAG
GATCCCCACAAGATCAAGTACATTTTGGAGAAGCATGGGGAGTCCCCACG
TGCTCTCATGCTAGGGGAAGGACAGCGAGAGGTGTCTTCCTTGGGTGAAA
TGAAGGCCCCCGACAAGGTGAAAATCACCGATCACACGCCTACTCTATTC
TCTCCGTCCACGTCCCCATTCTCCAATTACTTTGCATCGTATAATATACC
CTCGGACAAAGAGATCTACGATTACCTCGGTTTTGGCCTCAAGATTTTTT
CCGAGGAAAATAGTGGAACTTACAATTGCGAGTGGATGGTGCTCGACGTC
ACACAGCGTTCCTTCCACGTGTTGGACCAGAAAGACATAAGGACAGACGC
ACTCCTACCCATTCTGAAACCGCAAGCCTTACTGTACTGGATGCGTGTTG
CGATTGCGAACAGCTGGGCGCAGAACGGGGAGCAGTGGACTGAGATGGTG
ATTACAGAGACTACCATTAGTATGTACCTCATCCAATACAATGATTATGA
GCACGACCCTCGCTCTATGGGTCATGCCTACTTGGCTGTGGCAGGCCGAG
GCGATCTGGAGGCAGCAAATACAGAAGTTATGTTGGCCAAAGACCTAGAG
GACGCGACGGAAAACGATCCGCTATTCAGCTCTTCCTCCTCATCTTCGTC
CCAATCTCCCCTCTATTCGATCAGCCCGTCGCCCGTATTTGCACCGCTGG
AAGGGGCGATGGACGCCAAGGTGGTCTCAGTGCGCGAGGCCTTCTCCAGC
CCTGACGGTCATCTGAGTCTGCACGCTCGCGTTGGACCAACACACGACCA
ACAAATACCTTTTTGCTGGGCAGGTCACGAACAAGAGGACGGGGAGACGA
CAGATAAAGGAACACGACCTGCCTGCTTCTGCTTTGCGTGGGAGCGTCTC
TCCCCCGGGAAAGTGCTGGCTGAGGAAATTCAGCGCCAGTATGGGCGACG
GTCCTTATTGTTGCGTGGGGGAAAGGTGTAGGATCCCCACAAGATCAAGT
ACATTTTGGAGAAGCATGGGGAGTCCCCACGTGCTCTCATGCTAGGGGAA
GGACAGCGAGAGGTGTCTTCCTTGGGTGAAATGAAGGCCCCCGACAAGGT
GAAAATCACCGATCACACGCCTACTCTATTCTCTCCGTCCACGTCCCCAT
TCTCCAATTACTTTGCATCGTATAATATACCCTCGGACAAAGAGATCTAC
GATTACCTCGGTTTTGGCCTCAAGATTTTTTCCGAGGAAAATAGTGGAAC
TTACAATTGCGAGTGGATGGTGCTCGACGTCACACAGCGTTCCTTCCACG
TGTTGGACCAGAAAGACATAAGGACAGACGCACTCCTACCCATTCTGAAA
CCGCAAGCCTTACTGTACTGGATGCGTGTTGCGATTGCGAACAGCTGGGC
GCAGAACGGGGAGCAGTGGACTGAGATGGTGATTACAGAGACTACCATTA
GTATGTACCTCATCCAATACAATGATTATGAGCACGACCCTCGCTCTATG
GGTCATGCCTACTTGGCTGTGGCAGGCCGAGGCGATCTGGAGGCAGCAAA
TACAGAAGTTATGTTGGCCAAAGACCTAGAGGACGCGACGGAAAACGATC
CGCTATTCAGCTCTTCCTCCTCATCTTCGTCCCAATCTCCCCTCTATTCG
ATCAGCCCGTCGCCCGTATTTGCACCGCTGGAAGGGGCGATGGACGCCAA
GGTGGTCTCAGTGCGCGAGGCCTTCTCCAGCCCTGACGGTCATCTGAGTC
TGCACGCTCGCGTTGGACCAACACACGACCAACAAATACCTTTTTGCTGG
GCAGGTCACGAACAAGAGGACGGGGAGACGACAGATAAAGGAACACGACC
TGCCTGCTTCTGCTTTGCGTGGGAGCGTCTCTCCCCCGGGAAAGTGCTGG
CTGAGGAAATTCAGCGCCAGTATGGGCGACGGTCCTTATTGTTGCGTGGG
GGAAAGGTGTAGGATCCCCACAAGATCAAGTACATTTTGGAGAAGCATGG
GGAGTCCCCACGTGCTCTCATGCTAGGGGAAGGACAGCGAGAGGTGTCTT
CCTTGGGTGAAATGAAGGCCCCCGACAAGGTGAAAATCACCGATCACACG
CCTACTCTATTCTCTCCGTCCACGTCCCCATTCTCCAATTACTTTGCATC
GTATAATATACCCTCGGACAAAGAGATCTACGATTACCTCGGTTTTGGCC
TCAAGATTTTTTCCGAGGAAAATAGTGGAACTTACAATTGCGAGTGGATG
GTGCTCGACGTCACACAGCGTTCCTTCCACGTGTTGGACCAGAAAGACAT
AAGGACAGACGCACTCCTACCCATTCTGAAACCGCAAGCCTTACTGTACT
GGATGCGTGTTGCGATTGCGAACAGCTGGGCGCAGAACGGGGAGCAGTGG
ACTGAGATGGTGATTACAGAGACTACCATTAGTATG back to top
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