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Properties
| Property Name | Value |
|---|
| TranscriptId | 613774 |
| Track | FilteredModels2 |
| ProteinId | 613688 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:40650..42812 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10956 ID=mRNA_10956|Name=jgi.p|Nanoce1779_2|613688|organism=Nannochloropsis oceanica|type=mRNA|length=931bp
AACAGCAGCAACATGGTCAAGAGCAGCCTCCTCGTCCTGGCCCTCGCGGC
CGCAGCCCAAGGCTTCCTCCTCCCCGTCCCGCAGCAAAGAACACAGACCA
CCAGCACCCAGCTAGCAGCGGCTGCCTTCACCACCGTGTCGGGCCGTGTG
GTGGAGGACCCCAAGGGCGAGCTGCAGAAGGTCCTGACCCCCTCTCCCAA
GGATGAGGCGCGACGAGCACGCGTGGGGAAGCTCTTGGAGGCGGCAGGGT
TGACATATACTGGGGAGGCTATCTTCCCTTCCAACCGGTACTACGGCGGG
GCTGTCTACAAGGACTTCACCAAGGCAGTCGGCGTCGAGCCCGCGGACCA
GGTGGGAGCAGCAGCACTGATCGTAGCGGCGGGCAACAGGGGCTACAAAC
CATTCCACAAGAAGGTGGGCACGTTTCTTGACGTCCTCCACTCCCTGACC
AAGAGCATCCTCTCGGAAAAGGACGAGTTCGAGGGCCCCGACCTTGCTAA
GGTATTCACCGGCCTAGTCAAGCTCAACTACGAGGGCTCCCCCAAGCAGC
ACATTCGCGATCTTGTCCGTGAAATATCTGCCCGTATCGAGGCCGGCGAG
CTGAATGGCGCACAGATCGCCGCTGTCCTGGACAGCTCGGCTTCGTACTG
GTTCACTCCTGAGGACTCTTTTTTCACCGCCATCGCCCTCAAGCTCTCTC
CCTCCGACGTCTCGGACCAGGACAAGGCTCGCGTGAAGGACGCCCTGGCT
CGCTTTACCTCCCGCCTTCCCCACCTGAAGGAGGAGGGCGTGCTCCCCGC
GGCCTTCCTCTCCTCCTTCTAAAGGGAGGGAGGGAAGGAGCGAGGGAGGA
GTGTATGGGTGTGTGGAGGTGACAGACGCACCGAGAGAAGACACGGTATA
TGATGGGGGGTTAGGGAGGATGCAAGGAAGG back to topprotein sequence of jgi.p|Nanoce1779_2|613688 >mRNA_10956-protein ID=mRNA_10956-protein|Name=jgi.p|Nanoce1779_2|613688|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MVKSSLLVLALAAAAQGFLLPVPQQRTQTTSTQLAAAAFTTVSGRVVEDP
KGELQKVLTPSPKDEARRARVGKLLEAAGLTYTGEAIFPSNRYYGGAVYK
DFTKAVGVEPADQVGAAALIVAAGNRGYKPFHKKVGTFLDVLHSLTKSIL
SEKDEFEGPDLAKVFTGLVKLNYEGSPKQHIRDLVREISARIEAGELNGA
QIAAVLDSSASYWFTPEDSFFTAIALKLSPSDVSDQDKARVKDALARFTS
RLPHLKEEGVLPAAFLSSF* back to topmRNA from alignment at scaffold_77:40650..42812- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10956 ID=mRNA_10956|Name=jgi.p|Nanoce1779_2|613688|organism=Nannochloropsis oceanica|type=mRNA|length=2163bp|location=Sequence derived from alignment at scaffold_77:40650..42812- (Nannochloropsis oceanica)
AACAGCAGCAACATGGTCAAGAGCAGCCTCCTCGTCCTGGCCCTCGCGGC
CGCAGCCCAAGGCTTCCTCCTCCCCGTCCCGCAGCAAAGAACACAGACCA
CCAGCACCCAGCTAGCAGCGGCTGCCTTCACCACCGTGTCGGGCCGTGTG
GTGGAGGACCCCAAGGGCGAGCTGCAGAAGGTCCTGACCCCCTCTCCCAA
GGATGAGGCGCGACGAGCACGCGTGGGGAAGCTCTTGGAGGCGGCAGGGT
TGACATATACTGGGGAGGCTATCTTCCCTTCCAACCGGTACGTCGCGTTT
GACTAGTGGCCCTCCCTCAGTCCCTCCTTCCCTCCCTCCTTCCCTCCTCC
CTGATATTTAGCATTGTGGCTTGCCGTCTTGGATCGATCCCATTTCCATG
ACATGTGGTATATAGCATCGCTGTCTCACAAGTGTCTTCGTTCTCTCTCC
TGTCGATCTTCCTTCCCTTGCCTCCCTTCTGTTCTTTCACCTCATTTTGG
CCTAATCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTTGCAGGTACTAC
GGCGGGGCTGTCTACAAGGACTTCACCAAGGCAGTCGGCGTCGAGCCCGC
GGACCAGGTAGGGATAGAGGAAGGGAGGGACGGAGGAACCGATATAGGTA
TATATGCACTTCTTCAGACATAAATATATGTATATATCTGTGGGGATGAG
GTCGACGGGGCCTGAGCGTCGGCTGGACCTCGTCATCCTACGCCATCCTC
TATTTCCTTCGTTACACCTCTCTGAGTCTCTACCACACCACTCCCTCCCT
CCTCGCTTGGGTTTCCCTCAGGTGGGAGCAGCAGCACTGATCGTAGCGGC
GGGCAACAGGGGCTACAAACCATTCCACAAGAAGGTGCGCCCCTCCCTCC
CTCCCTCCCTTCTTGGATTCAGCTCCCTCACCCGTTTTCCACTCTTTCTC
TTCACTCACTCCCTCCCTCCCGCCCTACCTCCCTCCATTCTCAGGTGGGC
ACGTTTCTTGACGTCCTCCACTCCCTGACCAAGAGCATCCTCTCGGAAAA
GGACGAGTTCGAGGGTACGTACTCTCCCTCCCTCCCTCCCTCCATCCCCC
CCCCCGTTCCGTCACACCACTTGCCCCTCGCCCGTCACTCCCCTTATCCA
TCCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTCTG
CCAGGCCCCGACCTTGCTAAGGTATTCACCGGCCTAGTCAAGCTCAACTA
CGAGGGCTCCCCCAAGCAGCACATTCGGTACGTCTTTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCTTCCATCCG
TTTGGACTTACACTTGAATCCTCTCCCTGCCTCCCTCCCTCCCTCCCTCC
CTCCCTTCACAGCGATCTTGTCCGTGAAATATCTGCCCGTATCGAGGCCG
GCGAGCTGAATGGCGCACAGGTATCTCCCTCCCTCCCTCCCTCCCTCCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCTTTCTTC
CTTTTCTCCCCTCGCTTTTTCCTTCCCTTTGGCCTTTCTCCATCCCCCTC
CTTCCTTCTCCTCCTCAGTGTGACCGACTTCCTGGACATTCACACCTTTC
TCCCCCCTTCCCTCCCCCCCTCCCTCCCCCTCGTCCCTCCCCCCCCTCCT
TTAGATCGCCGCTGTCCTGGACAGCTCGGCTTCGTACTGGTTCACTCCTG
AGGACTCTTTTTTCACCGCCATCGCCCTCAAGCTCTCTCCCTCCGACGTC
TCGGACCAGGTGCGTCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCT
CCCTCCCTCCTTCGTGTCTCTTTTCTTGCCCTCGGCGCCCACTCACTCCC
CCCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCTCCCTCCTC
AGGACAAGGCTCGCGTGAAGGACGCCCTGGCTCGCTTTACCTCCCGCCTT
CCCCACCTGAAGGAGGAGGGCGTGCTCCCCGCGGCCTTCCTCTCCTCCTT
CTAAAGGGAGGGAGGGAAGGAGCGAGGGAGGAGTGTATGGGTGTGTGGAG
GTGACAGACGCACCGAGAGAAGACACGGTATATGATGGGGGGTTAGGGAG
GATGCAAGGAAGG back to topCoding sequence (CDS) from alignment at scaffold_77:40650..42812- >mRNA_10956 ID=mRNA_10956|Name=jgi.p|Nanoce1779_2|613688|organism=Nannochloropsis oceanica|type=CDS|length=6480bp|location=Sequence derived from alignment at scaffold_77:40650..42812- (Nannochloropsis oceanica)
GACAAGGCTCGCGTGAAGGACGCCCTGGCTCGCTTTACCTCCCGCCTTCC
CCACCTGAAGGAGGAGGGCGTGCTCCCCGCGGCCTTCCTCTCCTCCTTCT
AAATCGCCGCTGTCCTGGACAGCTCGGCTTCGTACTGGTTCACTCCTGAG
GACTCTTTTTTCACCGCCATCGCCCTCAAGCTCTCTCCCTCCGACGTCTC
GGACCAGCGATCTTGTCCGTGAAATATCTGCCCGTATCGAGGCCGGCGAG
CTGAATGGCGCACAGGCCCCGACCTTGCTAAGGTATTCACCGGCCTAGTC
AAGCTCAACTACGAGGGCTCCCCCAAGCAGCACATTCGGTGGGCACGTTT
CTTGACGTCCTCCACTCCCTGACCAAGAGCATCCTCTCGGAAAAGGACGA
GTTCGAGGGTGGGAGCAGCAGCACTGATCGTAGCGGCGGGCAACAGGGGC
TACAAACCATTCCACAAGAAGGTACTACGGCGGGGCTGTCTACAAGGACT
TCACCAAGGCAGTCGGCGTCGAGCCCGCGGACCAGATGGTCAAGAGCAGC
CTCCTCGTCCTGGCCCTCGCGGCCGCAGCCCAAGGCTTCCTCCTCCCCGT
CCCGCAGCAAAGAACACAGACCACCAGCACCCAGCTAGCAGCGGCTGCCT
TCACCACCGTGTCGGGCCGTGTGGTGGAGGACCCCAAGGGCGAGCTGCAG
AAGGTCCTGACCCCCTCTCCCAAGGATGAGGCGCGACGAGCACGCGTGGG
GAAGCTCTTGGAGGCGGCAGGGTTGACATATACTGGGGAGGCTATCTTCC
CTTCCAACCGGACAAGGCTCGCGTGAAGGACGCCCTGGCTCGCTTTACCT
CCCGCCTTCCCCACCTGAAGGAGGAGGGCGTGCTCCCCGCGGCCTTCCTC
TCCTCCTTCTAAATCGCCGCTGTCCTGGACAGCTCGGCTTCGTACTGGTT
CACTCCTGAGGACTCTTTTTTCACCGCCATCGCCCTCAAGCTCTCTCCCT
CCGACGTCTCGGACCAGCGATCTTGTCCGTGAAATATCTGCCCGTATCGA
GGCCGGCGAGCTGAATGGCGCACAGGCCCCGACCTTGCTAAGGTATTCAC
CGGCCTAGTCAAGCTCAACTACGAGGGCTCCCCCAAGCAGCACATTCGGT
GGGCACGTTTCTTGACGTCCTCCACTCCCTGACCAAGAGCATCCTCTCGG
AAAAGGACGAGTTCGAGGGTGGGAGCAGCAGCACTGATCGTAGCGGCGGG
CAACAGGGGCTACAAACCATTCCACAAGAAGGTACTACGGCGGGGCTGTC
TACAAGGACTTCACCAAGGCAGTCGGCGTCGAGCCCGCGGACCAGATGGT
CAAGAGCAGCCTCCTCGTCCTGGCCCTCGCGGCCGCAGCCCAAGGCTTCC
TCCTCCCCGTCCCGCAGCAAAGAACACAGACCACCAGCACCCAGCTAGCA
GCGGCTGCCTTCACCACCGTGTCGGGCCGTGTGGTGGAGGACCCCAAGGG
CGAGCTGCAGAAGGTCCTGACCCCCTCTCCCAAGGATGAGGCGCGACGAG
CACGCGTGGGGAAGCTCTTGGAGGCGGCAGGGTTGACATATACTGGGGAG
GCTATCTTCCCTTCCAACCGGACAAGGCTCGCGTGAAGGACGCCCTGGCT
CGCTTTACCTCCCGCCTTCCCCACCTGAAGGAGGAGGGCGTGCTCCCCGC
GGCCTTCCTCTCCTCCTTCTAAATCGCCGCTGTCCTGGACAGCTCGGCTT
CGTACTGGTTCACTCCTGAGGACTCTTTTTTCACCGCCATCGCCCTCAAG
CTCTCTCCCTCCGACGTCTCGGACCAGCGATCTTGTCCGTGAAATATCTG
CCCGTATCGAGGCCGGCGAGCTGAATGGCGCACAGGCCCCGACCTTGCTA
AGGTATTCACCGGCCTAGTCAAGCTCAACTACGAGGGCTCCCCCAAGCAG
CACATTCGGTGGGCACGTTTCTTGACGTCCTCCACTCCCTGACCAAGAGC
ATCCTCTCGGAAAAGGACGAGTTCGAGGGTGGGAGCAGCAGCACTGATCG
TAGCGGCGGGCAACAGGGGCTACAAACCATTCCACAAGAAGGTACTACGG
CGGGGCTGTCTACAAGGACTTCACCAAGGCAGTCGGCGTCGAGCCCGCGG
ACCAGATGGTCAAGAGCAGCCTCCTCGTCCTGGCCCTCGCGGCCGCAGCC
CAAGGCTTCCTCCTCCCCGTCCCGCAGCAAAGAACACAGACCACCAGCAC
CCAGCTAGCAGCGGCTGCCTTCACCACCGTGTCGGGCCGTGTGGTGGAGG
ACCCCAAGGGCGAGCTGCAGAAGGTCCTGACCCCCTCTCCCAAGGATGAG
GCGCGACGAGCACGCGTGGGGAAGCTCTTGGAGGCGGCAGGGTTGACATA
TACTGGGGAGGCTATCTTCCCTTCCAACCGGACAAGGCTCGCGTGAAGGA
CGCCCTGGCTCGCTTTACCTCCCGCCTTCCCCACCTGAAGGAGGAGGGCG
TGCTCCCCGCGGCCTTCCTCTCCTCCTTCTAAATCGCCGCTGTCCTGGAC
AGCTCGGCTTCGTACTGGTTCACTCCTGAGGACTCTTTTTTCACCGCCAT
CGCCCTCAAGCTCTCTCCCTCCGACGTCTCGGACCAGCGATCTTGTCCGT
GAAATATCTGCCCGTATCGAGGCCGGCGAGCTGAATGGCGCACAGGCCCC
GACCTTGCTAAGGTATTCACCGGCCTAGTCAAGCTCAACTACGAGGGCTC
CCCCAAGCAGCACATTCGGTGGGCACGTTTCTTGACGTCCTCCACTCCCT
GACCAAGAGCATCCTCTCGGAAAAGGACGAGTTCGAGGGTGGGAGCAGCA
GCACTGATCGTAGCGGCGGGCAACAGGGGCTACAAACCATTCCACAAGAA
GGTACTACGGCGGGGCTGTCTACAAGGACTTCACCAAGGCAGTCGGCGTC
GAGCCCGCGGACCAGATGGTCAAGAGCAGCCTCCTCGTCCTGGCCCTCGC
GGCCGCAGCCCAAGGCTTCCTCCTCCCCGTCCCGCAGCAAAGAACACAGA
CCACCAGCACCCAGCTAGCAGCGGCTGCCTTCACCACCGTGTCGGGCCGT
GTGGTGGAGGACCCCAAGGGCGAGCTGCAGAAGGTCCTGACCCCCTCTCC
CAAGGATGAGGCGCGACGAGCACGCGTGGGGAAGCTCTTGGAGGCGGCAG
GGTTGACATATACTGGGGAGGCTATCTTCCCTTCCAACCGGACAAGGCTC
GCGTGAAGGACGCCCTGGCTCGCTTTACCTCCCGCCTTCCCCACCTGAAG
GAGGAGGGCGTGCTCCCCGCGGCCTTCCTCTCCTCCTTCTAAATCGCCGC
TGTCCTGGACAGCTCGGCTTCGTACTGGTTCACTCCTGAGGACTCTTTTT
TCACCGCCATCGCCCTCAAGCTCTCTCCCTCCGACGTCTCGGACCAGCGA
TCTTGTCCGTGAAATATCTGCCCGTATCGAGGCCGGCGAGCTGAATGGCG
CACAGGCCCCGACCTTGCTAAGGTATTCACCGGCCTAGTCAAGCTCAACT
ACGAGGGCTCCCCCAAGCAGCACATTCGGTGGGCACGTTTCTTGACGTCC
TCCACTCCCTGACCAAGAGCATCCTCTCGGAAAAGGACGAGTTCGAGGGT
GGGAGCAGCAGCACTGATCGTAGCGGCGGGCAACAGGGGCTACAAACCAT
TCCACAAGAAGGTACTACGGCGGGGCTGTCTACAAGGACTTCACCAAGGC
AGTCGGCGTCGAGCCCGCGGACCAGATGGTCAAGAGCAGCCTCCTCGTCC
TGGCCCTCGCGGCCGCAGCCCAAGGCTTCCTCCTCCCCGTCCCGCAGCAA
AGAACACAGACCACCAGCACCCAGCTAGCAGCGGCTGCCTTCACCACCGT
GTCGGGCCGTGTGGTGGAGGACCCCAAGGGCGAGCTGCAGAAGGTCCTGA
CCCCCTCTCCCAAGGATGAGGCGCGACGAGCACGCGTGGGGAAGCTCTTG
GAGGCGGCAGGGTTGACATATACTGGGGAGGCTATCTTCCCTTCCAACCG
GACAAGGCTCGCGTGAAGGACGCCCTGGCTCGCTTTACCTCCCGCCTTCC
CCACCTGAAGGAGGAGGGCGTGCTCCCCGCGGCCTTCCTCTCCTCCTTCT
AAATCGCCGCTGTCCTGGACAGCTCGGCTTCGTACTGGTTCACTCCTGAG
GACTCTTTTTTCACCGCCATCGCCCTCAAGCTCTCTCCCTCCGACGTCTC
GGACCAGCGATCTTGTCCGTGAAATATCTGCCCGTATCGAGGCCGGCGAG
CTGAATGGCGCACAGGCCCCGACCTTGCTAAGGTATTCACCGGCCTAGTC
AAGCTCAACTACGAGGGCTCCCCCAAGCAGCACATTCGGTGGGCACGTTT
CTTGACGTCCTCCACTCCCTGACCAAGAGCATCCTCTCGGAAAAGGACGA
GTTCGAGGGTGGGAGCAGCAGCACTGATCGTAGCGGCGGGCAACAGGGGC
TACAAACCATTCCACAAGAAGGTACTACGGCGGGGCTGTCTACAAGGACT
TCACCAAGGCAGTCGGCGTCGAGCCCGCGGACCAGATGGTCAAGAGCAGC
CTCCTCGTCCTGGCCCTCGCGGCCGCAGCCCAAGGCTTCCTCCTCCCCGT
CCCGCAGCAAAGAACACAGACCACCAGCACCCAGCTAGCAGCGGCTGCCT
TCACCACCGTGTCGGGCCGTGTGGTGGAGGACCCCAAGGGCGAGCTGCAG
AAGGTCCTGACCCCCTCTCCCAAGGATGAGGCGCGACGAGCACGCGTGGG
GAAGCTCTTGGAGGCGGCAGGGTTGACATATACTGGGGAGGCTATCTTCC
CTTCCAACCGGACAAGGCTCGCGTGAAGGACGCCCTGGCTCGCTTTACCT
CCCGCCTTCCCCACCTGAAGGAGGAGGGCGTGCTCCCCGCGGCCTTCCTC
TCCTCCTTCTAAATCGCCGCTGTCCTGGACAGCTCGGCTTCGTACTGGTT
CACTCCTGAGGACTCTTTTTTCACCGCCATCGCCCTCAAGCTCTCTCCCT
CCGACGTCTCGGACCAGCGATCTTGTCCGTGAAATATCTGCCCGTATCGA
GGCCGGCGAGCTGAATGGCGCACAGGCCCCGACCTTGCTAAGGTATTCAC
CGGCCTAGTCAAGCTCAACTACGAGGGCTCCCCCAAGCAGCACATTCGGT
GGGCACGTTTCTTGACGTCCTCCACTCCCTGACCAAGAGCATCCTCTCGG
AAAAGGACGAGTTCGAGGGTGGGAGCAGCAGCACTGATCGTAGCGGCGGG
CAACAGGGGCTACAAACCATTCCACAAGAAGGTACTACGGCGGGGCTGTC
TACAAGGACTTCACCAAGGCAGTCGGCGTCGAGCCCGCGGACCAGATGGT
CAAGAGCAGCCTCCTCGTCCTGGCCCTCGCGGCCGCAGCCCAAGGCTTCC
TCCTCCCCGTCCCGCAGCAAAGAACACAGACCACCAGCACCCAGCTAGCA
GCGGCTGCCTTCACCACCGTGTCGGGCCGTGTGGTGGAGGACCCCAAGGG
CGAGCTGCAGAAGGTCCTGACCCCCTCTCCCAAGGATGAGGCGCGACGAG
CACGCGTGGGGAAGCTCTTGGAGGCGGCAGGGTTGACATATACTGGGGAG
GCTATCTTCCCTTCCAACCGGACAAGGCTCGCGTGAAGGACGCCCTGGCT
CGCTTTACCTCCCGCCTTCCCCACCTGAAGGAGGAGGGCGTGCTCCCCGC
GGCCTTCCTCTCCTCCTTCTAAATCGCCGCTGTCCTGGACAGCTCGGCTT
CGTACTGGTTCACTCCTGAGGACTCTTTTTTCACCGCCATCGCCCTCAAG
CTCTCTCCCTCCGACGTCTCGGACCAGCGATCTTGTCCGTGAAATATCTG
CCCGTATCGAGGCCGGCGAGCTGAATGGCGCACAGGCCCCGACCTTGCTA
AGGTATTCACCGGCCTAGTCAAGCTCAACTACGAGGGCTCCCCCAAGCAG
CACATTCGGTGGGCACGTTTCTTGACGTCCTCCACTCCCTGACCAAGAGC
ATCCTCTCGGAAAAGGACGAGTTCGAGGGTGGGAGCAGCAGCACTGATCG
TAGCGGCGGGCAACAGGGGCTACAAACCATTCCACAAGAAGGTACTACGG
CGGGGCTGTCTACAAGGACTTCACCAAGGCAGTCGGCGTCGAGCCCGCGG
ACCAGATGGTCAAGAGCAGCCTCCTCGTCCTGGCCCTCGCGGCCGCAGCC
CAAGGCTTCCTCCTCCCCGTCCCGCAGCAAAGAACACAGACCACCAGCAC
CCAGCTAGCAGCGGCTGCCTTCACCACCGTGTCGGGCCGTGTGGTGGAGG
ACCCCAAGGGCGAGCTGCAGAAGGTCCTGACCCCCTCTCCCAAGGATGAG
GCGCGACGAGCACGCGTGGGGAAGCTCTTGGAGGCGGCAGGGTTGACATA
TACTGGGGAGGCTATCTTCCCTTCCAACCG back to top
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