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Properties
| Property Name | Value |
|---|
| TranscriptId | 613738 |
| Track | FilteredModels2 |
| ProteinId | 613652 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:4586..6808 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10945 ID=mRNA_10945|Name=jgi.p|Nanoce1779_2|613652|organism=Nannochloropsis oceanica|type=mRNA|length=1374bp
ACAGGCCATGCGCGGTCTCAAAGCCTTTCAGAGGAGGGGTGCAGACACAG
AGGAGGAGGAGGAGAAGGAGGAGGAGAAGAAGGAGGAGAAGGAGGAGGAC
ACGTTAGCAGCAGTTGCAACAAAGAAGCGGGGCCCGGGTGACGACAATCA
GAGCAACGACCACGACGAGGAGAAGACTGCAAATGAGGACACGGGGAGTC
CAGCAGGAGCAGGGCTGGAGGAGGGAGAGCTATGCGACGACGATAAAGAA
GCGATTCAGACAGCAGTATCTGCAGCAATAGCAGCGGCTATCGAGGAGTG
GGGCGATAGGCAAGGTGAGGAAGAGGAGGAAGAGGGAGAGGGGGAGAAGA
AAAAGCGAGAAGATGGAAACGACGGCAAGGAGAGTGCGCCACTTGTAGCA
GCAGGTGGGGAAAATGAGGAGGAGGAGGACGAGGATGTTGAGGCTTCACT
TTATCCCCCGGCCCCACCATCCGGCCTGCTTCCTCCGTTTTGGGCCGCCG
CGCAAGACCCCTCTACGAATGCCACCTATTATTTCCACCAACAGACGGGC
GTGCGCTCCTGGGAACCGCCACCATTACTTCCTTTGTCGCCCCCTCACAC
TTACCCTGGGCAGGCCCCGGTTGCCCCTCCCTCTGCACCACAGCTTCCCC
CCGAGCTGGCCAAGCTACACGCGGCGTTAGACAAGGTGGACAGCACCCTA
TCAAATGCCGACACGTCCTCGTTTCCCCCTGCTGCCGCCACATCCTCTGT
CCCCCTCTCGCCCTCCGAGGCGGCGGCGGCCGTCTGGGTTGAGCTCGTGG
ATGAGGGCACGGGGCGGGTGTACTATTACGACAATGTCTCGGGAGCGACC
CGATGGTCCATGCCCCAGGCCTTCCAGGGCGAAAGTAGGACAGCCTGGCC
AGAGGGAGGCCTTCACGGAGGTCTTCAGCCTCCTGTCATTTCCGCCTACG
ACCGCGACGTACGGATTTTGAGCCACTTCTTCGACCCTTCCACTCTCGCG
GCTAACCGGGAGGAGGCCAAGAGGAAGAAGGCGGAGATGTGCACAGTCGT
TGACTGGCGCCAGGTGAAGGATAAGAAGAAGGCGGAGAAGAAGCGCAGGG
GAAACGAATGGTTGTACAAAGGATGAATAACGTGGAGGATGCCAACTGCC
GCGAACTGCACCAAATCGAGGCGACATTTATGGTCACCGCCAGTGTGAAA
ATCACGGTGGTGAATTTCCCTGTGACTGATTTTCGCTAAGGATGTCTTGC
ATTCTTCGTCGACATCATTGGTCTCGGTTCTGAAGGAAGGATTAGGTGCG
ATCGCACTGAACCGGAGGGAATCTGGGTGGGTAGTGTTAATGTCAAATGC
GACAACAACAGAACTTCCCGAGGA back to topprotein sequence of jgi.p|Nanoce1779_2|613652 >mRNA_10945-protein ID=mRNA_10945-protein|Name=jgi.p|Nanoce1779_2|613652|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MRGLKAFQRRGADTEEEEEKEEEKKEEKEEDTLAAVATKKRGPGDDNQSN
DHDEEKTANEDTGSPAGAGLEEGELCDDDKEAIQTAVSAAIAAAIEEWGD
RQGEEEEEEGEGEKKKREDGNDGKESAPLVAAGGENEEEEDEDVEASLYP
PAPPSGLLPPFWAAAQDPSTNATYYFHQQTGVRSWEPPPLLPLSPPHTYP
GQAPVAPPSAPQLPPELAKLHAALDKVDSTLSNADTSSFPPAAATSSVPL
SPSEAAAAVWVELVDEGTGRVYYYDNVSGATRWSMPQAFQGESRTAWPEG
GLHGGLQPPVISAYDRDVRILSHFFDPSTLAANREEAKRKKAEMCTVVDW
RQVKDKKKAEKKRRGNEWLYKG* back to topmRNA from alignment at scaffold_77:4586..6808- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10945 ID=mRNA_10945|Name=jgi.p|Nanoce1779_2|613652|organism=Nannochloropsis oceanica|type=mRNA|length=2223bp|location=Sequence derived from alignment at scaffold_77:4586..6808- (Nannochloropsis oceanica)
ACAGGCCATGCGCGGTCTCAAAGCCTTTCAGAGGAGGGGTGCAGACACAG
AGGAGGAGGAGGAGAAGGAGGAGGAGAAGAAGGAGGAGAAGGAGGAGGAC
ACGTTAGCAGCAGTTGCAACAAAGAAGCGGGGCCCGGGTGACGACAATCA
GAGCAACGACCACGACGAGGAGAAGACTGCAAATGAGGACACGGGGAGTC
CAGCAGGAGCAGGGCTGGAGGAGGGAGAGCTATGCGACGACGATAAAGAA
GCGATTCAGACAGCAGTATCTGCAGCAATAGCAGCGGCTATCGAGGAGTG
GGGCGATAGGCAAGGTGAGGAAGAGGAGGAAGAGGGAGAGGGGGAGAAGA
AAAAGCGAGAAGATGGAAACGACGGCAAGGAGAGTGCGCCACTTGTAGCA
GCAGGTGGGGAAAATGAGGAGGAGGAGGACGAGGATGTTGAGGCTTCACT
TTATCCCCCGGCCCCACCATCCGGCCTGCTTCCTCCGTTTTGGGCCGCCG
CGCAAGACCCCTCTACGAATGCCACCTATTATTTCCACCAACAGACGGGC
GTGCGCTCCTGGGAACCGCCACCATTACTTCCTTTGTCGCCCCCTCACAC
TTACCCTGGGCAGGCCCCGGTTGCCCCTCCCTCTGCACCACAGCTTCCCC
CCGAGCTGGCCAAGCTACACGCGGCGTTAGACAAGGTAGGTCCAAGGGGA
AGAAAAGACGGTAATGCGATGGGGAAGACGGAAGGGAAATTTTAACAGGC
TTGACCCGGAATCCTAAGTGATGCTGATCTGAGACAGACATCGAGGAAGG
AAGGCGTCCCTTCTTTTTCTCCGACTCCCTCATTTGAGCACCTTTTTCAT
CGCTATTCCGCCTTTTTCCAGCTCATAACAGCATCATTTTCCCTCCCTTC
ATTTTGCTATTCAACCTTCCCTACCAGGTGGACAGCACCCTATCAAATGC
CGACACGTCCTCGTTTCCCCCTGCTGCCGCCACATCCTCTGTCCCCCTCT
CGCCCTCCGAGGCGGCGGCGGCCGTCTGGGTTGAGCTCGTGGATGAGGGC
ACGGGGCGGGTGTACTATTACGACAATGTCTCGGGAGCGACCCGATGGTC
CATGCCCCAGGCCTTCCAGGTCTGTGGGCTTGGGAGTGGGCTAGTTTCCT
TGCTCTTTCCCTTGTCTGCTTTCATTCTTTATCCGTGCCTCTTTTTGTCT
CTGTCTCTGTATCTACCCAACAAATACTTGTACGAATAGAAGTACCTGAG
ATTCTCGATCCCTCCCACTTAACCTCCTCCCGCCTACCTTCCTTTCTCAG
GGCGAAAGTAGGACAGCCTGGCCAGAGGGAGGCCTTCACGGAGGTCTTCA
GGTACGGCGATCGAATGGAGAAGGATAGAGGGGAAGGGCGGGAGGGAGGA
CAGGGTGGTGAGAGGGGAGTTCATTTCGAGGCGTCAAGAGTGTGTATATA
GCCACTGCTTTGGGGAAGCAGTATGCGAGCGAGCCCTCTCGTGCGTGAGA
GGGCACCACATTGGTGGAATCGGGGGGAAGGGGGGGAGGAGGTATGAAAC
AAAGTGAGAAGTGAATGGATAGCAGAAGGGCTGAGCAAAATTTGATTCAA
CCACTCTCACCCCTGACTGACTTCTTCCCTCTCCCCCTCCCCTCTAGCCT
CCTGTCATTTCCGCCTACGACCGCGACGTACGGATTTTGAGCCACTTCTT
CGACCCTTCCACTCTCGCGGCTAACCGGGAGGAGGCCAAGAGGAAGAAGG
CGGAGATGTGCACAGGTAGGTGGAAGAGAAGCCACGGATATGCAGCAAAG
GGAAGGGAAGCTAGAAAGGCAGTAGGCGTCTCGTTGACTCACCTATTGAC
TCGTCTTCTTTTTCCCTCGCTCTCTTTGTCGCCCTCCGTTCGTAGTCGTT
GACTGGCGCCAGGTGAAGGATAAGAAGAAGGCGGAGAAGAAGCGCAGGGG
AAACGAATGGTTGTACAAAGGATGAATAACGTGGAGGATGCCAACTGCCG
CGAACTGCACCAAATCGAGGCGACATTTATGGTCACCGCCAGTGTGAAAA
TCACGGTGGTGAATTTCCCTGTGACTGATTTTCGCTAAGGATGTCTTGCA
TTCTTCGTCGACATCATTGGTCTCGGTTCTGAAGGAAGGATTAGGTGCGA
TCGCACTGAACCGGAGGGAATCTGGGTGGGTAGTGTTAATGTCAAATGCG
ACAACAACAGAACTTCCCGAGGA back to topCoding sequence (CDS) from alignment at scaffold_77:4586..6808- >mRNA_10945 ID=mRNA_10945|Name=jgi.p|Nanoce1779_2|613652|organism=Nannochloropsis oceanica|type=CDS|length=5595bp|location=Sequence derived from alignment at scaffold_77:4586..6808- (Nannochloropsis oceanica)
TCGTTGACTGGCGCCAGGTGAAGGATAAGAAGAAGGCGGAGAAGAAGCGC
AGGGGAAACGAATGGTTGTACAAAGGATGACCTCCTGTCATTTCCGCCTA
CGACCGCGACGTACGGATTTTGAGCCACTTCTTCGACCCTTCCACTCTCG
CGGCTAACCGGGAGGAGGCCAAGAGGAAGAAGGCGGAGATGTGCACAGGG
CGAAAGTAGGACAGCCTGGCCAGAGGGAGGCCTTCACGGAGGTCTTCAGG
TGGACAGCACCCTATCAAATGCCGACACGTCCTCGTTTCCCCCTGCTGCC
GCCACATCCTCTGTCCCCCTCTCGCCCTCCGAGGCGGCGGCGGCCGTCTG
GGTTGAGCTCGTGGATGAGGGCACGGGGCGGGTGTACTATTACGACAATG
TCTCGGGAGCGACCCGATGGTCCATGCCCCAGGCCTTCCAGATGCGCGGT
CTCAAAGCCTTTCAGAGGAGGGGTGCAGACACAGAGGAGGAGGAGGAGAA
GGAGGAGGAGAAGAAGGAGGAGAAGGAGGAGGACACGTTAGCAGCAGTTG
CAACAAAGAAGCGGGGCCCGGGTGACGACAATCAGAGCAACGACCACGAC
GAGGAGAAGACTGCAAATGAGGACACGGGGAGTCCAGCAGGAGCAGGGCT
GGAGGAGGGAGAGCTATGCGACGACGATAAAGAAGCGATTCAGACAGCAG
TATCTGCAGCAATAGCAGCGGCTATCGAGGAGTGGGGCGATAGGCAAGGT
GAGGAAGAGGAGGAAGAGGGAGAGGGGGAGAAGAAAAAGCGAGAAGATGG
AAACGACGGCAAGGAGAGTGCGCCACTTGTAGCAGCAGGTGGGGAAAATG
AGGAGGAGGAGGACGAGGATGTTGAGGCTTCACTTTATCCCCCGGCCCCA
CCATCCGGCCTGCTTCCTCCGTTTTGGGCCGCCGCGCAAGACCCCTCTAC
GAATGCCACCTATTATTTCCACCAACAGACGGGCGTGCGCTCCTGGGAAC
CGCCACCATTACTTCCTTTGTCGCCCCCTCACACTTACCCTGGGCAGGCC
CCGGTTGCCCCTCCCTCTGCACCACAGCTTCCCCCCGAGCTGGCCAAGCT
ACACGCGGCGTTAGACAAGTCGTTGACTGGCGCCAGGTGAAGGATAAGAA
GAAGGCGGAGAAGAAGCGCAGGGGAAACGAATGGTTGTACAAAGGATGAC
CTCCTGTCATTTCCGCCTACGACCGCGACGTACGGATTTTGAGCCACTTC
TTCGACCCTTCCACTCTCGCGGCTAACCGGGAGGAGGCCAAGAGGAAGAA
GGCGGAGATGTGCACAGGGCGAAAGTAGGACAGCCTGGCCAGAGGGAGGC
CTTCACGGAGGTCTTCAGGTGGACAGCACCCTATCAAATGCCGACACGTC
CTCGTTTCCCCCTGCTGCCGCCACATCCTCTGTCCCCCTCTCGCCCTCCG
AGGCGGCGGCGGCCGTCTGGGTTGAGCTCGTGGATGAGGGCACGGGGCGG
GTGTACTATTACGACAATGTCTCGGGAGCGACCCGATGGTCCATGCCCCA
GGCCTTCCAGATGCGCGGTCTCAAAGCCTTTCAGAGGAGGGGTGCAGACA
CAGAGGAGGAGGAGGAGAAGGAGGAGGAGAAGAAGGAGGAGAAGGAGGAG
GACACGTTAGCAGCAGTTGCAACAAAGAAGCGGGGCCCGGGTGACGACAA
TCAGAGCAACGACCACGACGAGGAGAAGACTGCAAATGAGGACACGGGGA
GTCCAGCAGGAGCAGGGCTGGAGGAGGGAGAGCTATGCGACGACGATAAA
GAAGCGATTCAGACAGCAGTATCTGCAGCAATAGCAGCGGCTATCGAGGA
GTGGGGCGATAGGCAAGGTGAGGAAGAGGAGGAAGAGGGAGAGGGGGAGA
AGAAAAAGCGAGAAGATGGAAACGACGGCAAGGAGAGTGCGCCACTTGTA
GCAGCAGGTGGGGAAAATGAGGAGGAGGAGGACGAGGATGTTGAGGCTTC
ACTTTATCCCCCGGCCCCACCATCCGGCCTGCTTCCTCCGTTTTGGGCCG
CCGCGCAAGACCCCTCTACGAATGCCACCTATTATTTCCACCAACAGACG
GGCGTGCGCTCCTGGGAACCGCCACCATTACTTCCTTTGTCGCCCCCTCA
CACTTACCCTGGGCAGGCCCCGGTTGCCCCTCCCTCTGCACCACAGCTTC
CCCCCGAGCTGGCCAAGCTACACGCGGCGTTAGACAAGTCGTTGACTGGC
GCCAGGTGAAGGATAAGAAGAAGGCGGAGAAGAAGCGCAGGGGAAACGAA
TGGTTGTACAAAGGATGACCTCCTGTCATTTCCGCCTACGACCGCGACGT
ACGGATTTTGAGCCACTTCTTCGACCCTTCCACTCTCGCGGCTAACCGGG
AGGAGGCCAAGAGGAAGAAGGCGGAGATGTGCACAGGGCGAAAGTAGGAC
AGCCTGGCCAGAGGGAGGCCTTCACGGAGGTCTTCAGGTGGACAGCACCC
TATCAAATGCCGACACGTCCTCGTTTCCCCCTGCTGCCGCCACATCCTCT
GTCCCCCTCTCGCCCTCCGAGGCGGCGGCGGCCGTCTGGGTTGAGCTCGT
GGATGAGGGCACGGGGCGGGTGTACTATTACGACAATGTCTCGGGAGCGA
CCCGATGGTCCATGCCCCAGGCCTTCCAGATGCGCGGTCTCAAAGCCTTT
CAGAGGAGGGGTGCAGACACAGAGGAGGAGGAGGAGAAGGAGGAGGAGAA
GAAGGAGGAGAAGGAGGAGGACACGTTAGCAGCAGTTGCAACAAAGAAGC
GGGGCCCGGGTGACGACAATCAGAGCAACGACCACGACGAGGAGAAGACT
GCAAATGAGGACACGGGGAGTCCAGCAGGAGCAGGGCTGGAGGAGGGAGA
GCTATGCGACGACGATAAAGAAGCGATTCAGACAGCAGTATCTGCAGCAA
TAGCAGCGGCTATCGAGGAGTGGGGCGATAGGCAAGGTGAGGAAGAGGAG
GAAGAGGGAGAGGGGGAGAAGAAAAAGCGAGAAGATGGAAACGACGGCAA
GGAGAGTGCGCCACTTGTAGCAGCAGGTGGGGAAAATGAGGAGGAGGAGG
ACGAGGATGTTGAGGCTTCACTTTATCCCCCGGCCCCACCATCCGGCCTG
CTTCCTCCGTTTTGGGCCGCCGCGCAAGACCCCTCTACGAATGCCACCTA
TTATTTCCACCAACAGACGGGCGTGCGCTCCTGGGAACCGCCACCATTAC
TTCCTTTGTCGCCCCCTCACACTTACCCTGGGCAGGCCCCGGTTGCCCCT
CCCTCTGCACCACAGCTTCCCCCCGAGCTGGCCAAGCTACACGCGGCGTT
AGACAAGTCGTTGACTGGCGCCAGGTGAAGGATAAGAAGAAGGCGGAGAA
GAAGCGCAGGGGAAACGAATGGTTGTACAAAGGATGACCTCCTGTCATTT
CCGCCTACGACCGCGACGTACGGATTTTGAGCCACTTCTTCGACCCTTCC
ACTCTCGCGGCTAACCGGGAGGAGGCCAAGAGGAAGAAGGCGGAGATGTG
CACAGGGCGAAAGTAGGACAGCCTGGCCAGAGGGAGGCCTTCACGGAGGT
CTTCAGGTGGACAGCACCCTATCAAATGCCGACACGTCCTCGTTTCCCCC
TGCTGCCGCCACATCCTCTGTCCCCCTCTCGCCCTCCGAGGCGGCGGCGG
CCGTCTGGGTTGAGCTCGTGGATGAGGGCACGGGGCGGGTGTACTATTAC
GACAATGTCTCGGGAGCGACCCGATGGTCCATGCCCCAGGCCTTCCAGAT
GCGCGGTCTCAAAGCCTTTCAGAGGAGGGGTGCAGACACAGAGGAGGAGG
AGGAGAAGGAGGAGGAGAAGAAGGAGGAGAAGGAGGAGGACACGTTAGCA
GCAGTTGCAACAAAGAAGCGGGGCCCGGGTGACGACAATCAGAGCAACGA
CCACGACGAGGAGAAGACTGCAAATGAGGACACGGGGAGTCCAGCAGGAG
CAGGGCTGGAGGAGGGAGAGCTATGCGACGACGATAAAGAAGCGATTCAG
ACAGCAGTATCTGCAGCAATAGCAGCGGCTATCGAGGAGTGGGGCGATAG
GCAAGGTGAGGAAGAGGAGGAAGAGGGAGAGGGGGAGAAGAAAAAGCGAG
AAGATGGAAACGACGGCAAGGAGAGTGCGCCACTTGTAGCAGCAGGTGGG
GAAAATGAGGAGGAGGAGGACGAGGATGTTGAGGCTTCACTTTATCCCCC
GGCCCCACCATCCGGCCTGCTTCCTCCGTTTTGGGCCGCCGCGCAAGACC
CCTCTACGAATGCCACCTATTATTTCCACCAACAGACGGGCGTGCGCTCC
TGGGAACCGCCACCATTACTTCCTTTGTCGCCCCCTCACACTTACCCTGG
GCAGGCCCCGGTTGCCCCTCCCTCTGCACCACAGCTTCCCCCCGAGCTGG
CCAAGCTACACGCGGCGTTAGACAAGTCGTTGACTGGCGCCAGGTGAAGG
ATAAGAAGAAGGCGGAGAAGAAGCGCAGGGGAAACGAATGGTTGTACAAA
GGATGACCTCCTGTCATTTCCGCCTACGACCGCGACGTACGGATTTTGAG
CCACTTCTTCGACCCTTCCACTCTCGCGGCTAACCGGGAGGAGGCCAAGA
GGAAGAAGGCGGAGATGTGCACAGGGCGAAAGTAGGACAGCCTGGCCAGA
GGGAGGCCTTCACGGAGGTCTTCAGGTGGACAGCACCCTATCAAATGCCG
ACACGTCCTCGTTTCCCCCTGCTGCCGCCACATCCTCTGTCCCCCTCTCG
CCCTCCGAGGCGGCGGCGGCCGTCTGGGTTGAGCTCGTGGATGAGGGCAC
GGGGCGGGTGTACTATTACGACAATGTCTCGGGAGCGACCCGATGGTCCA
TGCCCCAGGCCTTCCAGATGCGCGGTCTCAAAGCCTTTCAGAGGAGGGGT
GCAGACACAGAGGAGGAGGAGGAGAAGGAGGAGGAGAAGAAGGAGGAGAA
GGAGGAGGACACGTTAGCAGCAGTTGCAACAAAGAAGCGGGGCCCGGGTG
ACGACAATCAGAGCAACGACCACGACGAGGAGAAGACTGCAAATGAGGAC
ACGGGGAGTCCAGCAGGAGCAGGGCTGGAGGAGGGAGAGCTATGCGACGA
CGATAAAGAAGCGATTCAGACAGCAGTATCTGCAGCAATAGCAGCGGCTA
TCGAGGAGTGGGGCGATAGGCAAGGTGAGGAAGAGGAGGAAGAGGGAGAG
GGGGAGAAGAAAAAGCGAGAAGATGGAAACGACGGCAAGGAGAGTGCGCC
ACTTGTAGCAGCAGGTGGGGAAAATGAGGAGGAGGAGGACGAGGATGTTG
AGGCTTCACTTTATCCCCCGGCCCCACCATCCGGCCTGCTTCCTCCGTTT
TGGGCCGCCGCGCAAGACCCCTCTACGAATGCCACCTATTATTTCCACCA
ACAGACGGGCGTGCGCTCCTGGGAACCGCCACCATTACTTCCTTTGTCGC
CCCCTCACACTTACCCTGGGCAGGCCCCGGTTGCCCCTCCCTCTGCACCA
CAGCTTCCCCCCGAGCTGGCCAAGCTACACGCGGCGTTAGACAAG back to top
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