jgi.p|Nanoce1779_2|613700, mRNA_10959 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613700
Unique NamemRNA_10959
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length506
Alignment locationscaffold_77:49284..50303 +

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Properties
Property NameValue
TranscriptId613786
TrackFilteredModels2
ProteinId613700
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:49284..50303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613700gene_10959Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613700mRNA_10959-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10959CDS_10959Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10959 ID=mRNA_10959|Name=jgi.p|Nanoce1779_2|613700|organism=Nannochloropsis oceanica|type=mRNA|length=506bp
CCTTCTCCTCCCTTGCCAACCTCGTCACGCGCTCGGCCCTCTCTACCACG
GACAAGGACGAGGGAGGGAGGGAGGGCGGGAGGGAGGAGGCATTGGACCG
TGTGTGTGACTGGGACGAGACCCTATCGGGGGGGGAGAAGCAGCGCCTGG
TGTTCGCCCGCTTGCTCTACCATAGGCCTGCCTTTGCCATCTTGGATGAA
TGCACCAGCGCCGTGTCGAGCGATATGGAGGACCGGCTCTATACCCGTGC
CAAACGCGATGGCATTACCCTCCTGACTGTGGCCCACAGGAAGTCTTTGT
GGAAGCACCACGAACACTTGTTGGTGCTTGACGGGCGGGGAGGATGGTCG
TTCAGGCCAATACGGGACGTGGAGCCGCAGGCTGCTGCAGTCACAGACAT
GTGAGCGGGAGGGATGGGAGAGGGGGAGGAACAAGAGAAGGCAAAGTGTA
CTTAAAATTAAAGAAATGAAAGATATTTGAAGGACGGATGGGTCTTCTCG
TCGACC
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protein sequence of jgi.p|Nanoce1779_2|613700

>mRNA_10959-protein ID=mRNA_10959-protein|Name=jgi.p|Nanoce1779_2|613700|organism=Nannochloropsis oceanica|type=polypeptide|length=60bp
MEDRLYTRAKRDGITLLTVAHRKSLWKHHEHLLVLDGRGGWSFRPIRDVE
PQAAAVTDM*
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mRNA from alignment at scaffold_77:49284..50303+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10959 ID=mRNA_10959|Name=jgi.p|Nanoce1779_2|613700|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp|location=Sequence derived from alignment at scaffold_77:49284..50303+ (Nannochloropsis oceanica)
CCTTCTCCTCCCTTGCCAACCTCGTCACGCGCTCGGCCCTCTCTACCACG
GACAAGGACGAGGGAGGGAGGGAGGGCGGGAGGGAGGAGGCATTGGACCG
TGTGTGTGACTGGGACGAGACCCTATCGGGGGGGGAGAAGCAGCGCCTGG
TGTTCGCCCGCTTGCTCTACCATAGGCCTGCCTTTGCCATCTTGGATGAA
TGCACCAGCGCCGTGTCGAGCGATATGGAGGTAGGGAGGGAAGGGGGGAG
GGAGGGCGGGCGGAAGGAGGACACTGGTGGTGGGTAGTGTGAGCGTAGAG
CAGCGACTGTCGGTAGCCGGCTTTCTCCATTCATCGACCTTCTCGGGTAG
GCCTTCATGTCTGTATTAACGTGACTGCATCGATGGAATTCCAGACAGCC
TTTGTATACATACCTTAAATACCTATCTGTATATCGATACACACGATGTG
GAGTGGTGGTATGCTACCTCCCCTCCCTCCTTGCCTCGCATGCACCCCAC
CACGCATAAAAAAAATCACCCCACCAAGCAATCGGGGATCACTCTTCATC
CTACGCGTGGCCCATCGCCATCCCCTCACGTCCTCCCTCCCTCCTTCCCT
TCCTCCTTCCCTCCCTCGACCTAGGACCGGCTCTATACCCGTGCCAAACG
CGATGGCATTACCCTCCTGACTGTGGCCCACAGGAAGTCTTTGTGGAAGC
ACCACGAACACTTGTTGGTGCTTGACGGGCGGGGAGGATGGTCGTTCAGG
TGAGGAGGAGGGAGGGATTAAGGACAGAGAGGCTGGGGCTCGTGCATGAG
AACAATCCCGAATTAAAGCTCATGCCTTATCATTTTTATTTTTCCCTTAT
CTAACATGCCGCAATATAGGCCAATACGGGACGTGGAGCCGCAGGCTGCT
GCAGTCACAGACATGTGAGCGGGAGGGATGGGAGAGGGGGAGGAACAAGA
GAAGGCAAAGTGTACTTAAAATTAAAGAAATGAAAGATATTTGAAGGACG
GATGGGTCTTCTCGTCGACC
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Coding sequence (CDS) from alignment at scaffold_77:49284..50303+

>mRNA_10959 ID=mRNA_10959|Name=jgi.p|Nanoce1779_2|613700|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_77:49284..50303+ (Nannochloropsis oceanica)
ATGGAGGACCGGCTCTATACCCGTGCCAAACGCGATGGCATTACCCTCCT
GACTGTGGCCCACAGGAAGTCTTTGTGGAAGCACCACGAACACTTGTTGG
TGCTTGACGGGCGGGGAGGATGGTCGTTCAGGCCAATACGGGACGTGGAG
CCGCAGGCTGCTGCAGTCACAGACATGTGAATGGAGGACCGGCTCTATAC
CCGTGCCAAACGCGATGGCATTACCCTCCTGACTGTGGCCCACAGGAAGT
CTTTGTGGAAGCACCACGAACACTTGTTGGTGCTTGACGGGCGGGGAGGA
TGGTCGTTCAGGCCAATACGGGACGTGGAGCCGCAGGCTGCTGCAGTCAC
AGACATGTGAATGGAGGACCGGCTCTATACCCGTGCCAAACGCGATGGCA
TTACCCTCCTGACTGTGGCCCACAGGAAGTCTTTGTGGAAGCACCACGAA
CACTTGTTGGTGCTTGACGGGCGGGGAGGATGGTCGTTCAGGCCAATACG
GGACGTGGAGCCGCAGGCTGCTGCAGTCACAGACATGTGA
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Synonyms
Publications