jgi.p|Nanoce1779_2|613682, mRNA_10952 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613682
Unique NamemRNA_10952
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1820
Alignment locationscaffold_77:29635..31454 -

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Properties
Property NameValue
TranscriptId613768
TrackFilteredModels2
ProteinId613682
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:29635..31454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613682gene_10952Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613682mRNA_10952-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10952CDS_10952Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10952 ID=mRNA_10952|Name=jgi.p|Nanoce1779_2|613682|organism=Nannochloropsis oceanica|type=mRNA|length=1820bp
ACAGCTCCAGACTTCCAGATCATTTTACAAGCAAATAAGGCCGAGATCCG
GAGTTATGGTATCTTCCCACCTCTTTGTCGTCATCCTTGCTTTATGCTCC
TCCGTCCGCTCCACTACCGCTGTCATCTCTTCCTTCGTCGGAACCCTTGA
CAACGACCCTGCTGCAAGGGATCGCCACCTCCTTCCCATAGTGAACGCCA
GTAATGCAGCTGCTACCCTCCCCCGTGGTCTTGAAAACGAGGACATAGCC
ATATGCTTTGACTTGGACGTACCATTGCAATGGACATCTGAGGAAGGGGA
GCTGCGCGTGAACGGCTTTCCTTTCCATCTCAAGGGAATCTCATGTATGT
CAATACTTTCATTTCATTTTTCAACCCACTCTCCTATCATTCATTTTTAC
ACATTCAATCAATCTATTGCAGATTTTGGCTTCGAGACGGGCACCATGTA
TCCAGGTGGCCTGTCCGGGAAAACCACCGTGCGTGACGTCTTCACCCTGC
TTCGGGCCGAGGGCTTTAATGCTTTGCGTATCCCTTTTTCAGCCGAGATA
GCCCTGAATCCAGACCGTATCCTCCGCGTCCAAGATCCCGATTTAGATAA
TCTCGGACATATGGCACGCTTGGCCAAATTTGTCGACGTGGCGGCTGAAT
TTGACCTCCTTGTGATGCCCGATATGCACCGCCTGTACGCGAATGGTGGG
ATTGATGCGCTCTGGTACGACAACAGGACACCCTACTCCCGTCTTTTGGA
AGCCTGGACAAACATCATGGGGGCGATAGAGGACAAATGGAACTTCGCGT
TTATCGATTTGAAGAACGAGCCTCATGGGCAAGCCACGTGGGGAAATAGC
AACCGGGCGACAGACTGGAACAAGGCGGCGGAAGAGCTCTCCAAGGCTTT
ATTTGGTCGTTTTCCGCAATGGCATGGGCTTGTTTTCGTAGGAGGTATCG
AGTGGGGTAACGCTATTCAAGGAATGCGCAACTTCCCTATTGACTTGGGT
CGCCCTGATTGGACGCGCCGCGTCGTCTACTCCCCTCATGTATATGGACC
CGATGTGTACGACCGACCTTACTTTAATTTTGGTTTTCCGGACAACTTAC
CAGGCATCTGGGAGTCGAGCTTTGGCTTTGTAGAATCCCTCTACGGGCAA
AACGCGGTGGTTATTGGCGAATGGGGCGGTAAATATGGACGAGGTCCCAG
TGGGAGACGAGACAAGACGTGGGCGGACACTTTGGCTAAGTGGGTCGTAA
ACCGTTGCTTGGAGGATAACTTCTACTGGTGTGTCAATCCAGACAGCAGC
GACACGGGGGGTATTTTGGAAGATGACTGGACCACGCCGGTAAAGCCCAA
GCTCGAACTCCTTCGCCGCGTCCAGCCCCATCCGTCGCTTTTGTACGGGA
CATCGCAGGGTAATGTTGCGTGCTTGTCTGAAGGAAAGTATGCGAACCCC
AACTGCCGTCGCAAGTAAATGAGCAAGGAAATATTGCAGAGGGTGAAAAT
GCGTATGGAATTTGAGAACGCAACAAGAGAAAGAAAAAATATAGCTCAAA
TACCCGTCAAGAAGTAACTGCTTCCCGAAGAAAGATAGCTATTTTAGATA
TGAAAAAGCAGCAAATGAAGAAGAACGGGGGAAGTAAAGACATGCAGCAG
GCTGTGAATAATGAGTGATATTAATAAGACACATAATCATAGGCAGGCTT
CGGAAATTTCCGAGGAGGAAAAAGTCGACAGAAATTCAGAGGAGGCACTG
AAAGTACACGATTAATAAAGAGGGAATGATATAGAGCATCACCGAGAAGT
GTCAGTATAGAAAAGTAGAA
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protein sequence of jgi.p|Nanoce1779_2|613682

>mRNA_10952-protein ID=mRNA_10952-protein|Name=jgi.p|Nanoce1779_2|613682|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MVSSHLFVVILALCSSVRSTTAVISSFVGTLDNDPAARDRHLLPIVNASN
AAATLPRGLENEDIAICFDLDVPLQWTSEEGELRVNGFPFHLKGISCMSI
LSFHFSTHSPIIHFYTFNQSIADFGFETGTMYPGGLSGKTTVRDVFTLLR
AEGFNALRIPFSAEIALNPDRILRVQDPDLDNLGHMARLAKFVDVAAEFD
LLVMPDMHRLYANGGIDALWYDNRTPYSRLLEAWTNIMGAIEDKWNFAFI
DLKNEPHGQATWGNSNRATDWNKAAEELSKALFGRFPQWHGLVFVGGIEW
GNAIQGMRNFPIDLGRPDWTRRVVYSPHVYGPDVYDRPYFNFGFPDNLPG
IWESSFGFVESLYGQNAVVIGEWGGKYGRGPSGRRDKTWADTLAKWVVNR
CLEDNFYWCVNPDSSDTGGILEDDWTTPVKPKLELLRRVQPHPSLLYGTS
QGNVACLSEGKYANPNCRRK*
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mRNA from alignment at scaffold_77:29635..31454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10952 ID=mRNA_10952|Name=jgi.p|Nanoce1779_2|613682|organism=Nannochloropsis oceanica|type=mRNA|length=1820bp|location=Sequence derived from alignment at scaffold_77:29635..31454- (Nannochloropsis oceanica)
ACAGCTCCAGACTTCCAGATCATTTTACAAGCAAATAAGGCCGAGATCCG
GAGTTATGGTATCTTCCCACCTCTTTGTCGTCATCCTTGCTTTATGCTCC
TCCGTCCGCTCCACTACCGCTGTCATCTCTTCCTTCGTCGGAACCCTTGA
CAACGACCCTGCTGCAAGGGATCGCCACCTCCTTCCCATAGTGAACGCCA
GTAATGCAGCTGCTACCCTCCCCCGTGGTCTTGAAAACGAGGACATAGCC
ATATGCTTTGACTTGGACGTACCATTGCAATGGACATCTGAGGAAGGGGA
GCTGCGCGTGAACGGCTTTCCTTTCCATCTCAAGGGAATCTCATGTATGT
CAATACTTTCATTTCATTTTTCAACCCACTCTCCTATCATTCATTTTTAC
ACATTCAATCAATCTATTGCAGATTTTGGCTTCGAGACGGGCACCATGTA
TCCAGGTGGCCTGTCCGGGAAAACCACCGTGCGTGACGTCTTCACCCTGC
TTCGGGCCGAGGGCTTTAATGCTTTGCGTATCCCTTTTTCAGCCGAGATA
GCCCTGAATCCAGACCGTATCCTCCGCGTCCAAGATCCCGATTTAGATAA
TCTCGGACATATGGCACGCTTGGCCAAATTTGTCGACGTGGCGGCTGAAT
TTGACCTCCTTGTGATGCCCGATATGCACCGCCTGTACGCGAATGGTGGG
ATTGATGCGCTCTGGTACGACAACAGGACACCCTACTCCCGTCTTTTGGA
AGCCTGGACAAACATCATGGGGGCGATAGAGGACAAATGGAACTTCGCGT
TTATCGATTTGAAGAACGAGCCTCATGGGCAAGCCACGTGGGGAAATAGC
AACCGGGCGACAGACTGGAACAAGGCGGCGGAAGAGCTCTCCAAGGCTTT
ATTTGGTCGTTTTCCGCAATGGCATGGGCTTGTTTTCGTAGGAGGTATCG
AGTGGGGTAACGCTATTCAAGGAATGCGCAACTTCCCTATTGACTTGGGT
CGCCCTGATTGGACGCGCCGCGTCGTCTACTCCCCTCATGTATATGGACC
CGATGTGTACGACCGACCTTACTTTAATTTTGGTTTTCCGGACAACTTAC
CAGGCATCTGGGAGTCGAGCTTTGGCTTTGTAGAATCCCTCTACGGGCAA
AACGCGGTGGTTATTGGCGAATGGGGCGGTAAATATGGACGAGGTCCCAG
TGGGAGACGAGACAAGACGTGGGCGGACACTTTGGCTAAGTGGGTCGTAA
ACCGTTGCTTGGAGGATAACTTCTACTGGTGTGTCAATCCAGACAGCAGC
GACACGGGGGGTATTTTGGAAGATGACTGGACCACGCCGGTAAAGCCCAA
GCTCGAACTCCTTCGCCGCGTCCAGCCCCATCCGTCGCTTTTGTACGGGA
CATCGCAGGGTAATGTTGCGTGCTTGTCTGAAGGAAAGTATGCGAACCCC
AACTGCCGTCGCAAGTAAATGAGCAAGGAAATATTGCAGAGGGTGAAAAT
GCGTATGGAATTTGAGAACGCAACAAGAGAAAGAAAAAATATAGCTCAAA
TACCCGTCAAGAAGTAACTGCTTCCCGAAGAAAGATAGCTATTTTAGATA
TGAAAAAGCAGCAAATGAAGAAGAACGGGGGAAGTAAAGACATGCAGCAG
GCTGTGAATAATGAGTGATATTAATAAGACACATAATCATAGGCAGGCTT
CGGAAATTTCCGAGGAGGAAAAAGTCGACAGAAATTCAGAGGAGGCACTG
AAAGTACACGATTAATAAAGAGGGAATGATATAGAGCATCACCGAGAAGT
GTCAGTATAGAAAAGTAGAA
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Coding sequence (CDS) from alignment at scaffold_77:29635..31454-

>mRNA_10952 ID=mRNA_10952|Name=jgi.p|Nanoce1779_2|613682|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at scaffold_77:29635..31454- (Nannochloropsis oceanica)
ATGGTATCTTCCCACCTCTTTGTCGTCATCCTTGCTTTATGCTCCTCCGT
CCGCTCCACTACCGCTGTCATCTCTTCCTTCGTCGGAACCCTTGACAACG
ACCCTGCTGCAAGGGATCGCCACCTCCTTCCCATAGTGAACGCCAGTAAT
GCAGCTGCTACCCTCCCCCGTGGTCTTGAAAACGAGGACATAGCCATATG
CTTTGACTTGGACGTACCATTGCAATGGACATCTGAGGAAGGGGAGCTGC
GCGTGAACGGCTTTCCTTTCCATCTCAAGGGAATCTCATGTATGTCAATA
CTTTCATTTCATTTTTCAACCCACTCTCCTATCATTCATTTTTACACATT
CAATCAATCTATTGCAGATTTTGGCTTCGAGACGGGCACCATGTATCCAG
GTGGCCTGTCCGGGAAAACCACCGTGCGTGACGTCTTCACCCTGCTTCGG
GCCGAGGGCTTTAATGCTTTGCGTATCCCTTTTTCAGCCGAGATAGCCCT
GAATCCAGACCGTATCCTCCGCGTCCAAGATCCCGATTTAGATAATCTCG
GACATATGGCACGCTTGGCCAAATTTGTCGACGTGGCGGCTGAATTTGAC
CTCCTTGTGATGCCCGATATGCACCGCCTGTACGCGAATGGTGGGATTGA
TGCGCTCTGGTACGACAACAGGACACCCTACTCCCGTCTTTTGGAAGCCT
GGACAAACATCATGGGGGCGATAGAGGACAAATGGAACTTCGCGTTTATC
GATTTGAAGAACGAGCCTCATGGGCAAGCCACGTGGGGAAATAGCAACCG
GGCGACAGACTGGAACAAGGCGGCGGAAGAGCTCTCCAAGGCTTTATTTG
GTCGTTTTCCGCAATGGCATGGGCTTGTTTTCGTAGGAGGTATCGAGTGG
GGTAACGCTATTCAAGGAATGCGCAACTTCCCTATTGACTTGGGTCGCCC
TGATTGGACGCGCCGCGTCGTCTACTCCCCTCATGTATATGGACCCGATG
TGTACGACCGACCTTACTTTAATTTTGGTTTTCCGGACAACTTACCAGGC
ATCTGGGAGTCGAGCTTTGGCTTTGTAGAATCCCTCTACGGGCAAAACGC
GGTGGTTATTGGCGAATGGGGCGGTAAATATGGACGAGGTCCCAGTGGGA
GACGAGACAAGACGTGGGCGGACACTTTGGCTAAGTGGGTCGTAAACCGT
TGCTTGGAGGATAACTTCTACTGGTGTGTCAATCCAGACAGCAGCGACAC
GGGGGGTATTTTGGAAGATGACTGGACCACGCCGGTAAAGCCCAAGCTCG
AACTCCTTCGCCGCGTCCAGCCCCATCCGTCGCTTTTGTACGGGACATCG
CAGGGTAATGTTGCGTGCTTGTCTGAAGGAAAGTATGCGAACCCCAACTG
CCGTCGCAAGTAA
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Synonyms
Publications