jgi.p|Nanoce1779_2|561228, mRNA_10951 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|561228
Unique Name	mRNA_10951
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1400
Alignment location	scaffold_77:27956..29509 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	561314
Track	FilteredModels2
ProteinId	561228

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_77	supercontig	scaffold_77:27956..29509 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|561228	gene_10951	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|561228	mRNA_10951-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10951	CDS_10951	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_77:27956..29509+
coding sequence from alignment at scaffold_77:27956..29509+

mRNA sequence

>mRNA_10951 ID=mRNA_10951|Name=jgi.p|Nanoce1779_2|561228|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp
CGGAACAAGGTGCTATCCTACTTAACAGTCGTCATCACTTTCACATGAAG
GGACTGACGTGGTTTGGCATGGATACGGCCGACACGCGGGCTCCTCACGG
TTTGTGGGCTACGACCCTTGACGACGTATTGGACTTCTTGGCCCTCAACA
AGTTCAACGTGCTTCGCCTTCCTGTTGCATATACCATAGCGTGTGATTTG
GCCCTGCGCGTTCCGAGCTCAGCTATATCCGGTGATTCCTCGTTGCACGG
ACTGAACGTGGGAAAGCTACTCGACACCATCTTTGAGCGGGCAGCAGCGC
GGGGCATTTTAGTGGTACTCGCCCTCTACAACGACGACGCTACCACACTC
TTCGGCTCCCAAGACCAGGGGCTGTGGTATGGCTCCAAAGCTTCATACCA
AAATTTCCAAAACGCCTGGCGCCGGCTCTTGACTCGATATGGCGACCGTT
GGAACCTGTTGGGTGTGGACCTGCTCGACCGCCCAGGCCGGGGCCGCGCA
ACGTGGGCCGAAAACAACCCCAGCACGGACTGGAACTTGGCAGCTCAAGA
CACGGCAGCCATCCTCATTCAGGAATACCCTCAGTACCATGGCTTATGGT
TCATACAAGGTATTGAGGGCGGGGAATTTGCAGCCCAATATGCGACGGAC
CTGCGCGGTGCCTTGACCCAGTCGCTGGACCTGTTTACCCCGGCGAGTAC
AAAGCGTGTGGTATACGAAGTGCTGCTCATGGGGCCTTCCGTCTCCCCGT
CGATGGGATATGTATATACCACATCTTTCCCCGATCAGATGTATGCGGCT
TATGACGACCTCTTTGGTGGCGTAGAGGAGGCGACTGGCCGAGCCGTGGT
GGTTGGCAAGTGGGGCGGTTCCCTCGATGATGCGCAGCAGGGTGATGCCA
TGTGGCAAAAGGCCGTTGCCGATTACTTTATCGACCGGTGCTTAGACGAC
ACTATCTACTGGGCCCTTAATCCTAATGCCAAAGATACAGGCGGTGTGCT
ATCGGCCGATTGGCGGACCCCTAACGAAGCCAAATTGGCGTTGCTGGCCC
GGATACAACCCCGCCCATCGGTCTTACTCCGCAACGCCGAGCCAGAGGGC
GGGTGGTCTTTTATGCCTGGCAGCTCGGCGAATCCCATCTGCAATTTGTA
AATCAAGAGGTAGAGGAAGGCAGGACAGGAACAGGCCTAGAGAGGGCAGA
GATCGAGGAAGGATGGTGAGCAAGAAAGGGAAGGAGCAGGTAACGATAGC
ATGAAAAGTAGTAAAGGTTAGGAAAGTGAGAAGAATAAGATGGCATTAAT
TGGTAGAAGGGAAAGACGATCCAAGAAAAAAGAAATATGATCAAAAACAA
ATCGTCAGCGCATGCAAAGCACAACAAGCGAAAAAGAGATGGAAACAAAA

protein sequence of jgi.p|Nanoce1779_2|561228

>mRNA_10951-protein ID=mRNA_10951-protein|Name=jgi.p|Nanoce1779_2|561228|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MKGLTWFGMDTADTRAPHGLWATTLDDVLDFLALNKFNVLRLPVAYTIAC
DLALRVPSSAISGDSSLHGLNVGKLLDTIFERAAARGILVVLALYNDDAT
TLFGSQDQGLWYGSKASYQNFQNAWRRLLTRYGDRWNLLGVDLLDRPGRG
RATWAENNPSTDWNLAAQDTAAILIQEYPQYHGLWFIQGIEGGEFAAQYA
TDLRGALTQSLDLFTPASTKRVVYEVLLMGPSVSPSMGYVYTTSFPDQMY
AAYDDLFGGVEEATGRAVVVGKWGGSLDDAQQGDAMWQKAVADYFIDRCL
DDTIYWALNPNAKDTGGVLSADWRTPNEAKLALLARIQPRPSVLLRNAEP
EGGWSFMPGSSANPICNL*

mRNA from alignment at scaffold_77:27956..29509+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10951 ID=mRNA_10951|Name=jgi.p|Nanoce1779_2|561228|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp|location=Sequence derived from alignment at scaffold_77:27956..29509+ (Nannochloropsis oceanica)
CGGAACAAGGTGCTATCCTACTTAACAGTCGTCATCACTTTCACATGAAG
GGACTGACGTGGTGAGTAAAAGTATGCGACCTTCGATTTTCTTGGCCAGA
GGCCGGGCACGCCTCTTACCCCTTGGAGGCTTTGTCCTCTAAGAGAAGGA
GATAAATCCTGACTCTCTCTCCTCTCTGTTTCTCCTTTTCTTGCCTTTTC
TTTTTCTTCTCCAAGGTTTGGCATGGATACGGCCGACACGCGGGCTCCTC
ACGGTTTGTGGGCTACGACCCTTGACGACGTATTGGACTTCTTGGCCCTC
AACAAGTTCAACGTGCTTCGCCTTCCTGTTGCATATACCATAGCGTGTGA
TTTGGCCCTGCGCGTTCCGAGCTCAGCTATATCCGGTGATTCCTCGTTGC
ACGGACTGAACGTGGGAAAGCTACTCGACACCATCTTTGAGCGGGCAGCA
GCGCGGGGCATTTTAGTGGTACTCGCCCTCTACAACGACGACGCTACCAC
ACTCTTCGGCTCCCAAGACCAGGGGCTGTGGTATGGCTCCAAAGCTTCAT
ACCAAAATTTCCAAAACGCCTGGCGCCGGCTCTTGACTCGATATGGCGAC
CGTTGGAACCTGTTGGGTGTGGACCTGCTCGACCGCCCAGGCCGGGGCCG
CGCAACGTGGGCCGAAAACAACCCCAGCACGGACTGGAACTTGGCAGCTC
AAGACACGGCAGCCATCCTCATTCAGGAATACCCTCAGTACCATGGCTTA
TGGTTCATACAAGGTATTGAGGGCGGGGAATTTGCAGCCCAATATGCGAC
GGACCTGCGCGGTGCCTTGACCCAGTCGCTGGACCTGTTTACCCCGGCGA
GTACAAAGCGTGTGGTATACGAAGTGCTGCTCATGGGGCCTTCCGTCTCC
CCGTCGATGGGATATGTATATACCACATCTTTCCCCGATCAGATGTATGC
GGCTTATGACGACCTCTTTGGTGGCGTAGAGGAGGCGACTGGCCGAGCCG
TGGTGGTTGGCAAGTGGGGCGGTTCCCTCGATGATGCGCAGCAGGGTGAT
GCCATGTGGCAAAAGGCCGTTGCCGATTACTTTATCGACCGGTGCTTAGA
CGACACTATCTACTGGGCCCTTAATCCTAATGCCAAAGATACAGGCGGTG
TGCTATCGGCCGATTGGCGGACCCCTAACGAAGCCAAATTGGCGTTGCTG
GCCCGGATACAACCCCGCCCATCGGTCTTACTCCGCAACGCCGAGCCAGA
GGGCGGGTGGTCTTTTATGCCTGGCAGCTCGGCGAATCCCATCTGCAATT
TGTAAATCAAGAGGTAGAGGAAGGCAGGACAGGAACAGGCCTAGAGAGGG
CAGAGATCGAGGAAGGATGGTGAGCAAGAAAGGGAAGGAGCAGGTAACGA
TAGCATGAAAAGTAGTAAAGGTTAGGAAAGTGAGAAGAATAAGATGGCAT
TAATTGGTAGAAGGGAAAGACGATCCAAGAAAAAAGAAATATGATCAAAA
ACAAATCGTCAGCGCATGCAAAGCACAACAAGCGAAAAAGAGATGGAAAC
AAAA

Coding sequence (CDS) from alignment at scaffold_77:27956..29509+

>mRNA_10951 ID=mRNA_10951|Name=jgi.p|Nanoce1779_2|561228|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_77:27956..29509+ (Nannochloropsis oceanica)
ATGAAGGGACTGACGTGGTTTGGCATGGATACGGCCGACACGCGGGCTCC
TCACGGTTTGTGGGCTACGACCCTTGACGACGTATTGGACTTCTTGGCCC
TCAACAAGTTCAACGTGCTTCGCCTTCCTGTTGCATATACCATAGCGTGT
GATTTGGCCCTGCGCGTTCCGAGCTCAGCTATATCCGGTGATTCCTCGTT
GCACGGACTGAACGTGGGAAAGCTACTCGACACCATCTTTGAGCGGGCAG
CAGCGCGGGGCATTTTAGTGGTACTCGCCCTCTACAACGACGACGCTACC
ACACTCTTCGGCTCCCAAGACCAGGGGCTGTGGTATGGCTCCAAAGCTTC
ATACCAAAATTTCCAAAACGCCTGGCGCCGGCTCTTGACTCGATATGGCG
ACCGTTGGAACCTGTTGGGTGTGGACCTGCTCGACCGCCCAGGCCGGGGC
CGCGCAACGTGGGCCGAAAACAACCCCAGCACGGACTGGAACTTGGCAGC
TCAAGACACGGCAGCCATCCTCATTCAGGAATACCCTCAGTACCATGGCT
TATGGTTCATACAAGGTATTGAGGGCGGGGAATTTGCAGCCCAATATGCG
ACGGACCTGCGCGGTGCCTTGACCCAGTCGCTGGACCTGTTTACCCCGGC
GAGTACAAAGCGTGTGGTATACGAAGTGCTGCTCATGGGGCCTTCCGTCT
CCCCGTCGATGGGATATGTATATACCACATCTTTCCCCGATCAGATGTAT
GCGGCTTATGACGACCTCTTTGGTGGCGTAGAGGAGGCGACTGGCCGAGC
CGTGGTGGTTGGCAAGTGGGGCGGTTCCCTCGATGATGCGCAGCAGGGTG
ATGCCATGTGGCAAAAGGCCGTTGCCGATTACTTTATCGACCGGTGCTTA
GACGACACTATCTACTGGGCCCTTAATCCTAATGCCAAAGATACAGGCGG
TGTGCTATCGGCCGATTGGCGGACCCCTAACGAAGCCAAATTGGCGTTGC
TGGCCCGGATACAACCCCGCCCATCGGTCTTACTCCGCAACGCCGAGCCA
GAGGGCGGGTGGTCTTTTATGCCTGGCAGCTCGGCGAATCCCATCTGCAA
TTTGTAAATGAAGGGACTGACGTGGTTTGGCATGGATACGGCCGACACGC
GGGCTCCTCACGGTTTGTGGGCTACGACCCTTGACGACGTATTGGACTTC
TTGGCCCTCAACAAGTTCAACGTGCTTCGCCTTCCTGTTGCATATACCAT
AGCGTGTGATTTGGCCCTGCGCGTTCCGAGCTCAGCTATATCCGGTGATT
CCTCGTTGCACGGACTGAACGTGGGAAAGCTACTCGACACCATCTTTGAG
CGGGCAGCAGCGCGGGGCATTTTAGTGGTACTCGCCCTCTACAACGACGA
CGCTACCACACTCTTCGGCTCCCAAGACCAGGGGCTGTGGTATGGCTCCA
AAGCTTCATACCAAAATTTCCAAAACGCCTGGCGCCGGCTCTTGACTCGA
TATGGCGACCGTTGGAACCTGTTGGGTGTGGACCTGCTCGACCGCCCAGG
CCGGGGCCGCGCAACGTGGGCCGAAAACAACCCCAGCACGGACTGGAACT
TGGCAGCTCAAGACACGGCAGCCATCCTCATTCAGGAATACCCTCAGTAC
CATGGCTTATGGTTCATACAAGGTATTGAGGGCGGGGAATTTGCAGCCCA
ATATGCGACGGACCTGCGCGGTGCCTTGACCCAGTCGCTGGACCTGTTTA
CCCCGGCGAGTACAAAGCGTGTGGTATACGAAGTGCTGCTCATGGGGCCT
TCCGTCTCCCCGTCGATGGGATATGTATATACCACATCTTTCCCCGATCA
GATGTATGCGGCTTATGACGACCTCTTTGGTGGCGTAGAGGAGGCGACTG
GCCGAGCCGTGGTGGTTGGCAAGTGGGGCGGTTCCCTCGATGATGCGCAG
CAGGGTGATGCCATGTGGCAAAAGGCCGTTGCCGATTACTTTATCGACCG
GTGCTTAGACGACACTATCTACTGGGCCCTTAATCCTAATGCCAAAGATA
CAGGCGGTGTGCTATCGGCCGATTGGCGGACCCCTAACGAAGCCAAATTG
GCGTTGCTGGCCCGGATACAACCCCGCCCATCGGTCTTACTCCGCAACGC
CGAGCCAGAGGGCGGGTGGTCTTTTATGCCTGGCAGCTCGGCGAATCCCA
TCTGCAATTTGTAA

Synonyms

Publications