jgi.p|Nanoce1779_2|613679, mRNA_10950 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613679
Unique NamemRNA_10950
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length508
Alignment locationscaffold_77:26624..27423 -

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Properties
Property NameValue
TranscriptId613765
TrackFilteredModels2
ProteinId613679
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:26624..27423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613679gene_10950Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613679mRNA_10950-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10950CDS_10950Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10950 ID=mRNA_10950|Name=jgi.p|Nanoce1779_2|613679|organism=Nannochloropsis oceanica|type=mRNA|length=508bp
AAAATCCACAGACAAGCAGGCCATGGCGGCCAGAATAGAAGCTATGGCCA
CTGTCGCAGCAGCATGCTTCGTCCTCCTGTTCTTTCCTTTATTGGCCTCC
GCCTTTTATCATCACCCTCCTCTCCCCCTCCTCTGCCGGCAACCTCCTCA
TACCCGCCTCTCCACGGCCATGGATGGCGCCATGTCTCCCTCCACCACTT
CGTCGTCCTCCTCTTCTCAATCCCAGGCCCCTCTCCTTCGCTTTGCCGCA
GATGCACCCGGCCTCTTGCAGCACATACAGCCGGCTATTGCCGCGTTGCT
GGCGGGGCGAGGGATCAAGAGGAAAAAGGGCAAGAAGAACCTGGGCGACT
ATATCAGGGAAACAGAGCTGACAGCTCTTTTGGAGGAGATGGTGCTGGAC
GAGCACCCATTTCTGGACGATCAAGAAGAGGAGGAGAAAGAGGAAGAAGG
GCCGCGAGACTTCGGGGAGAAGACAGGTGGAGGCAGCATCAGCAGTAGTA
GCAACAGC
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protein sequence of jgi.p|Nanoce1779_2|613679

>mRNA_10950-protein ID=mRNA_10950-protein|Name=jgi.p|Nanoce1779_2|613679|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MLRPPVLSFIGLRLLSSPSSPPPLPATSSYPPLHGHGWRHVSLHHFVVLL
FSIPGPSPSLCRRCTRPLAAHTAGYCRVAGGARDQEEKGQEEPGRLYQGN
RADSSFGGDGAGRAPISGRSRRGGERGRRAARLRGEDRWRQHQQ*
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mRNA from alignment at scaffold_77:26624..27423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10950 ID=mRNA_10950|Name=jgi.p|Nanoce1779_2|613679|organism=Nannochloropsis oceanica|type=mRNA|length=800bp|location=Sequence derived from alignment at scaffold_77:26624..27423- (Nannochloropsis oceanica)
AAAATCCACAGACAAGCAGGCCATGGCGGCCAGAATAGAAGCTATGGCCA
CTGTCGCAGCAGCATGCTTCGTCCTCCTGTTCTTTCCTTTATTGGCCTCC
GCCTTTTATCATCACCCTCCTCTCCCCCTCCTCTGCCGGCAACCTCCTCA
TACCCGCCTCTCCACGGCCATGGATGGCGCCATGTCTCCCTCCACCACTT
CGTCGTCCTCCTCTTCTCAATCCCAGGCCCCTCTCCTTCGCTTTGCCGCA
GATGCACCCGGCCTCTTGCAGCACATACAGCCGGCTATTGCCGCGTTGCT
GGCGGGGTACGTCAAGGGAGCGAGGGAGGGAAAGGATGACAGAGAGAGAG
GACAACGCGACGGTAAAAGTGAGGCAACGACTCCATGGAAGAAGCGTCAC
ATTTGTATAAAACCTTCTCTCTCTAACAGGCGAGGGATCAAGAGGAAAAA
GGGCAAGAAGAACCTGGGCGACTATATCAGGGAAACAGAGCTGACAGCTC
TTTTGGTGCGTTAAGAGTAGTGGAGGGAGAATATGAGGCAAACAGGCAGG
GAGGAGAGGCGGAAGGAAAGAAGCGCGAGAGAAAGGAGATTGGGAGAGAG
GGAGGGTGGACGGAGGGAGAGGGACATGATAGAGGGTAGACTCACTTCTT
TCACTCATCTTTTGAAACAAACAGGAGGAGATGGTGCTGGACGAGCACCC
ATTTCTGGACGATCAAGAAGAGGAGGAGAAAGAGGAAGAAGGGCCGCGAG
ACTTCGGGGAGAAGACAGGTGGAGGCAGCATCAGCAGTAGTAGCAACAGC
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Coding sequence (CDS) from alignment at scaffold_77:26624..27423-

>mRNA_10950 ID=mRNA_10950|Name=jgi.p|Nanoce1779_2|613679|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_77:26624..27423- (Nannochloropsis oceanica)
GAGGAGATGGTGCTGGACGAGCACCCATTTCTGGACGATCAAGAAGAGGA
GGAGAAAGAGGAAGAAGGGCCGCGAGACTTCGGGGAGAAGACAGGTGGAG
GCAGCATCAGCAGTAGGCGAGGGATCAAGAGGAAAAAGGGCAAGAAGAAC
CTGGGCGACTATATCAGGGAAACAGAGCTGACAGCTCTTTTGATGCTTCG
TCCTCCTGTTCTTTCCTTTATTGGCCTCCGCCTTTTATCATCACCCTCCT
CTCCCCCTCCTCTGCCGGCAACCTCCTCATACCCGCCTCTCCACGGCCAT
GGATGGCGCCATGTCTCCCTCCACCACTTCGTCGTCCTCCTCTTCTCAAT
CCCAGGCCCCTCTCCTTCGCTTTGCCGCAGATGCACCCGGCCTCTTGCAG
CACATACAGCCGGCTATTGCCGCGTTGCTGGCGGGGAGGAGATGGTGCTG
GACGAGCACCCATTTCTGGACGATCAAGAAGAGGAGGAGAAAGAGGAAGA
AGGGCCGCGAGACTTCGGGGAGAAGACAGGTGGAGGCAGCATCAGCAGTA
GGCGAGGGATCAAGAGGAAAAAGGGCAAGAAGAACCTGGGCGACTATATC
AGGGAAACAGAGCTGACAGCTCTTTTGATGCTTCGTCCTCCTGTTCTTTC
CTTTATTGGCCTCCGCCTTTTATCATCACCCTCCTCTCCCCCTCCTCTGC
CGGCAACCTCCTCATACCCGCCTCTCCACGGCCATGGATGGCGCCATGTC
TCCCTCCACCACTTCGTCGTCCTCCTCTTCTCAATCCCAGGCCCCTCTCC
TTCGCTTTGCCGCAGATGCACCCGGCCTCTTGCAGCACATACAGCCGGCT
ATTGCCGCGTTGCTGGCGGGGAGGAGATGGTGCTGGACGAGCACCCATTT
CTGGACGATCAAGAAGAGGAGGAGAAAGAGGAAGAAGGGCCGCGAGACTT
CGGGGAGAAGACAGGTGGAGGCAGCATCAGCAGTAGGCGAGGGATCAAGA
GGAAAAAGGGCAAGAAGAACCTGGGCGACTATATCAGGGAAACAGAGCTG
ACAGCTCTTTTGATGCTTCGTCCTCCTGTTCTTTCCTTTATTGGCCTCCG
CCTTTTATCATCACCCTCCTCTCCCCCTCCTCTGCCGGCAACCTCCTCAT
ACCCGCCTCTCCACGGCCATGGATGGCGCCATGTCTCCCTCCACCACTTC
GTCGTCCTCCTCTTCTCAATCCCAGGCCCCTCTCCTTCGCTTTGCCGCAG
ATGCACCCGGCCTCTTGCAGCACATACAGCCGGCTATTGCCGCGTTGCTG
GCGGG
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Synonyms
Publications