jgi.p|Nanoce1779_2|613689, mRNA_10957 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613689
Unique NamemRNA_10957
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length601
Alignment locationscaffold_77:42759..43401 +

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Properties
Property NameValue
TranscriptId613775
TrackFilteredModels2
ProteinId613689
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:42759..43401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613689gene_10957Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613689mRNA_10957-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10957CDS_10957Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10957 ID=mRNA_10957|Name=jgi.p|Nanoce1779_2|613689|organism=Nannochloropsis oceanica|type=mRNA|length=601bp
TGCGGCCGCGAGGGCCAGGACGAGGAGGCTGCTCTTGACCATGTTGCTGC
TGTTTGGGGTGAGGGGAGGGGATGATATGAGGGGATCGGCGCTATGTCGC
TTGGTTGGATTTTGACCGTATCAATGTCCAGCGACCGATCAGTCAGCATG
TATGCATATGGTACTCCTGATGTCGACAATGCTCATGACGCGGATGCGGC
TGCCAGTCTGGTTGCTCCTGGATTTGGAAGTAATAAGCTGGTCTCACGTC
ATGCGAGATGGCTGTGTGTATCCTCCTCCTCCACCCATCCAGAGCTTCCC
AGCCTCCCCTGCTGTCTACCCCCTCGTCTCTACGCAGCCAACCTGTGTAG
ATTATAATGCAGAGTCCAACAGCAGGAAGGAGGACACCAAATTGGGCTCG
GGGCCAGCGAGAGCCCAACAGCAACAGCAAGAAGGGAGCCGGAGGCAAGA
AAAGAGTCTTACCAATCCCCTATCTTTGAAAACGCCCACGCCAACAAAGG
TTTTCGAAACCCCATGAGATGTGTCTCGCGAAACCTTCCCAGGGGACAGT
CCGTGGTTCAGTAACCGAGTCAAACACCACGGCGGCAGAGGAAAGCAGGA
G
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protein sequence of jgi.p|Nanoce1779_2|613689

>mRNA_10957-protein ID=mRNA_10957-protein|Name=jgi.p|Nanoce1779_2|613689|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MHMVLLMSTMLMTRMRLPVWLLLDLEVISWSHVMRDGCVYPPPPPIQSFP
ASPAVYPLVSTQPTCVDYNAESNSRKEDTKLGSGPARAQQQQQEGSRRQE
KSLTNPLSLKTPTPTKVFETP*
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mRNA from alignment at scaffold_77:42759..43401+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10957 ID=mRNA_10957|Name=jgi.p|Nanoce1779_2|613689|organism=Nannochloropsis oceanica|type=mRNA|length=643bp|location=Sequence derived from alignment at scaffold_77:42759..43401+ (Nannochloropsis oceanica)
TGCGGCCGCGAGGGCCAGGACGAGGAGGCTGCTCTTGACCATGTTGCTGC
TGTTTGGGGTGAGGGGAGGGGATGATATGAGGGGATCGGCGCTATGTCGC
TTGGTTGGATTTTGACCGTATCAATGTCCAGCGACCGATCAGTCAGCATG
TATGCATATGGTACTCCTGATGTCGACAATGCTCATGACGCGGATGCGGC
TGCCAGTCTGGTTGCTCCTGGATTTGGAAGTAATAAGCTGGTCTCACGTC
ATGCGAGATGGCTGTGTGTATCCTCCTCCTCCACCCATCCAGAGCTTCCC
AGCCTCCCCTGCTGTCTACCCCCTCGTCTCTACGCAGCCAACCTGTGTAG
ATTATAATGCAGAGTCCAACAGCAGGAAGGAGGACACCAAATTGGGCTCG
GGGCCAGCGAGGTAAAAAGACAACAAACAACAAGTGGCAGCCACACCACA
CAGAGCCCAACAGCAACAGCAAGAAGGGAGCCGGAGGCAAGAAAAGAGTC
TTACCAATCCCCTATCTTTGAAAACGCCCACGCCAACAAAGGTTTTCGAA
ACCCCATGAGATGTGTCTCGCGAAACCTTCCCAGGGGACAGTCCGTGGTT
CAGTAACCGAGTCAAACACCACGGCGGCAGAGGAAAGCAGGAG
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Coding sequence (CDS) from alignment at scaffold_77:42759..43401+

>mRNA_10957 ID=mRNA_10957|Name=jgi.p|Nanoce1779_2|613689|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_77:42759..43401+ (Nannochloropsis oceanica)
ATGCATATGGTACTCCTGATGTCGACAATGCTCATGACGCGGATGCGGCT
GCCAGTCTGGTTGCTCCTGGATTTGGAAGTAATAAGCTGGTCTCACGTCA
TGCGAGATGGCTGTGTGTATCCTCCTCCTCCACCCATCCAGAGCTTCCCA
GCCTCCCCTGCTGTCTACCCCCTCGTCTCTACGCAGCCAACCTGTGTAGA
TTATAATGCAGAGTCCAACAGCAGGAAGGAGGACACCAAATTGGGCTCGG
GGCCAGCGAGAGCCCAACAGCAACAGCAAGAAGGGAGCCGGAGGCAAGAA
AAGAGTCTTACCAATCCCCTATCTTTGAAAACGCCCACGCCAACAAAGGT
TTTCGAAACCCCATGAATGCATATGGTACTCCTGATGTCGACAATGCTCA
TGACGCGGATGCGGCTGCCAGTCTGGTTGCTCCTGGATTTGGAAGTAATA
AGCTGGTCTCACGTCATGCGAGATGGCTGTGTGTATCCTCCTCCTCCACC
CATCCAGAGCTTCCCAGCCTCCCCTGCTGTCTACCCCCTCGTCTCTACGC
AGCCAACCTGTGTAGATTATAATGCAGAGTCCAACAGCAGGAAGGAGGAC
ACCAAATTGGGCTCGGGGCCAGCGAGAGCCCAACAGCAACAGCAAGAAGG
GAGCCGGAGGCAAGAAAAGAGTCTTACCAATCCCCTATCTTTGAAAACGC
CCACGCCAACAAAGGTTTTCGAAACCCCATGA
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Synonyms
Publications