jgi.p|Nanoce1779_2|411797, mRNA_10955 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|411797
Unique NamemRNA_10955
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length995
Alignment locationscaffold_77:36879..39085 -

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Properties
Property NameValue
TranscriptId411883
TrackFilteredModels2
ProteinId411797
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:36879..39085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|411797gene_10955Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|411797mRNA_10955-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10955CDS_10955Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10955 ID=mRNA_10955|Name=jgi.p|Nanoce1779_2|411797|organism=Nannochloropsis oceanica|type=mRNA|length=995bp
CTCCTCCTCCTCCTCCGTTTCCTCCTCCTCCTCCTCCTGACCCTCCATGA
CATGCCGCAGCAGACTTCCTCTCCTCACTACACGTCTCTTCTCCTCCCCT
ACTCCCTCTTCTTCGTCACTGCTGCTACTCTCCTCAACCTCCTCCTCCTC
CTCTTCCTCCTCCTCCTCTTCCTCCTCATCCTCTTCCTCCTCAACCTCGG
GCTGCTCTTCATGATAATACCGTTGCCGAAGATATCTCGGCCTCTTCTTT
CTCCCTGCTCGCCCTCCCTCCCTCCCCTCCTTCCTTCCTCCATGGTTGGG
ATGGTGAGAGACGGAGGCCACGAGCACTGCGGCACCTGCCGAGCCTTTTC
GACGATGGGAAGGGAGGGAGTGGGGGAGAGAGGACAAGTGCAAGGTCCGT
GCTCCGTAGACTGCGCTGCGTTTGCCGCTGGTGCCGGTGGTGGTGGAGGA
GGAGGAGGGGTGGGAGGGAGGAAGGGATGGGGGAAGGGAAGGACCACGCG
TGAAGGGGGAGAGGATGGTGTTGAGGATCATGCCGGTCAGGCCCTGGAGT
TAGTCAGGAGGGGAGGAAGGGAGGAAGGAGGGAAGGAGGGAGGAAGGGGT
TAAGGGAAGGAGGGAGGGTTAGGGTCCTCCACAGGGAAGGGAGGGGAGGG
GTGGGTGCGAGGGGTGATGGGAGAAATGGGTAAGAGGGCCAGGCCACGCA
CCATTCCTCAAGGTGCTTTCAGAATGCCCTTTGTTTTGCTTCCCAGACCT
GTGTGCGAGAAGTAAGGCGCGGGACCTATTCCCTCTCGCTCCACGATACG
GCACAATTATTCTTTTTCACCCTGCTGACGACTATTAGGCTTAGGCTGTG
CTTCCTGCTGGTAGCTCACGTCTTGTGCTGGAGACAGACCGACCACACCA
CACCAGACGCAAGACCGCTCCTCCTTGCTACTACCGGTGCTGCTGGGCTG
GCGCCGCGGTTGGCGCTGCAGCTGGTGCTGCTGCCTGTATGCAGT
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protein sequence of jgi.p|Nanoce1779_2|411797

>mRNA_10955-protein ID=mRNA_10955-protein|Name=jgi.p|Nanoce1779_2|411797|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MPQQTSSPHYTSLLLPYSLFFVTAATLLNLLLLLFLLLLFLLILFLLNLG
LLFMIIPLPKISRPLLSPCSPSLPPLLPSSMVGMVRDGGHEHCGTCRAFS
TMGREGVGERGQVQGPCSVDCAAFAAGAGGGGGGGGVGGRKGWGKGRTTR
EGGEDGVEDHAGQALELVRRGGREEGGKEGGRG*
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mRNA from alignment at scaffold_77:36879..39085-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10955 ID=mRNA_10955|Name=jgi.p|Nanoce1779_2|411797|organism=Nannochloropsis oceanica|type=mRNA|length=2207bp|location=Sequence derived from alignment at scaffold_77:36879..39085- (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCGTTTCCTCCTCCTCCTCCTCCTGACCCTCCATGA
CATGCCGCAGCAGACTTCCTCTCCTCACTACACGTCTCTTCTCCTCCCCT
ACTCCCTCTTCTTCGTCACTGCTGCTACTCTCCTCAACCTCCTCCTCCTC
CTCTTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCTTCCTCTTCTTCTT
CTTGTTCTGCCTCTTCCATGGGTTGTCTGTTCTTCCTCCTTCCTCTCCTC
TCTCCCCCTCGTCCTCGCCTCGGTTTGGTCACAGCCTCCGTCTTCCTCCT
CCTCACATTAACCCGACGAGGGACATAAATGGATGCAAGGCCGCCCTCCT
GCCACGGGGAAAAAGAAGGAAGGAAATGAAGAAGGGAGGGAGTAAGGGAA
GGAGGATGAGGAAATCATGGAGTGGAAGCGTGGGAAAGAAAGGGAGGGAG
GAAGGGAGGGAGGGAGGCAGGGAGGGAGGGCCAGGGCCGTACCTCATCGT
CCGAATAAGCTTCGGCGATGCGTTCCGAGCGACGACGACGGAGGGAGGGA
TCATCCCTCCCCATCACCTCCACCTCCTCCTCAGGCAAGAGGCGGAAGGT
CGGACAATGCACGAGGGAGGGAAGGAGGAAGGGGGAGGTGTCCTGGGCAG
CGGCAGCAGTGGCTTCTGATTTAAGTGCGGGAAGGAAGGAAGGCAGGGAG
GGAGGGAGGGAGGGAGAGAGGGTGAGTAGGATTAGAGGTCATGACAATAG
GGCCAGATATCCCTTTCTCCCTCACTCCCTTCTTCCTTCTCTCTCTCCTT
CCCTCCCTCCTTCCTTCCCTTCCTCACCTTTCCGGAGCTGCTTGGCTGCC
ACATTCCGCTTCACCACCGCACTTATCGATCCTTCCTCCTTCTCACCCTC
CCTCTCTCCCTCTTCCTCCTCTTCTCCGCTGAGCATAAGCAGGGTTATCT
TGCTCGTGGCCGTGAGGGGAGGGAAGGAGGGAGGGAGGGCGAGGAAGGCT
GCCTCAGAGAGCCCGAACCTGGCTTTGCAAGACAGCGAGAAGGCGAGGGA
GGAAGAGGGGGAGGAGGAGGGGGAGGTGGTGGGTCGAGATCGTTTCAGGC
CGCTCATGGTTGGTGAAGGGAGGGGGGAGGGGGAGGGGGAGAGGGAGGAC
GGTTGGCAGGAAGGGGCGCGATTTTCCTTGCCACTCTTTCGGTGGCCAGG
GACACGGCCTTGGGGGTGTGTGTATGCCGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCT
GCTGTCGTGCCAACATATCGCCTTCCCCCCCTCCTTCGATGTCTCTCCTT
CAAAATTTGCCGCGGTTCCTCCTCCTCTTCTTCCTCCTCATCCTCTTCCT
CCTCAACCTCGGGCTGCTCTTCATGATAATACCGTTGCCGAAGATATCTC
GGCCTCTTCTTTCTCCCTGCTCGCCCTCCCTCCCTCCCCTCCTTCCTTCC
TCCATGGTTGGGATGGTGAGAGACGGAGGCCACGAGCACTGCGGCACCTG
CCGAGCCTTTTCGACGATGGGAAGGGAGGGAGTGGGGGAGAGAGGACAAG
TGCAAGGTCCGTGCTCCGTAGACTGCGCTGCGTTTGCCGCTGGTGCCGGT
GGTGGTGGAGGAGGAGGAGGGGTGGGAGGGAGGAAGGGATGGGGGAAGGG
AAGGACCACGCGTGAAGGGGGAGAGGATGGTGTTGAGGATCATGCCGGTC
AGGCCCTGGAGTTAGTCAGGAGGGGAGGAAGGGAGGAAGGAGGGAAGGAG
GGAGGAAGGGGTTAAGGGAAGGAGGGAGGGTTAGGGTCCTCCACAGGGAA
GGGAGGGGAGGGGTGGGTGCGAGGGGTGATGGGAGAAATGGGTAAGAGGG
CCAGGCCACGCACCATTCCTCAAGGTGCTTTCAGAATGCCCTTTGTTTTG
CTTCCCAGACCTGTGTGCGAGAAGTAAGGCGCGGGACCTATTCCCTCTCG
CTCCACGATACGGCACAATTATTCTTTTTCACCCTGCTGACGACTATTAG
GCTTAGGCTGTGCTTCCTGCTGGTAGCTCACGTCTTGTGCTGGAGACAGA
CCGACCACACCACACCAGACGCAAGACCGCTCCTCCTTGCTACTACCGGT
GCTGCTGGGCTGGCGCCGCGGTTGGCGCTGCAGCTGGTGCTGCTGCCTGT
ATGCAGT
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Coding sequence (CDS) from alignment at scaffold_77:36879..39085-

>mRNA_10955 ID=mRNA_10955|Name=jgi.p|Nanoce1779_2|411797|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at scaffold_77:36879..39085- (Nannochloropsis oceanica)
TCTTCCTCCTCATCCTCTTCCTCCTCAACCTCGGGCTGCTCTTCATGATA
ATACCGTTGCCGAAGATATCTCGGCCTCTTCTTTCTCCCTGCTCGCCCTC
CCTCCCTCCCCTCCTTCCTTCCTCCATGGTTGGGATGGTGAGAGACGGAG
GCCACGAGCACTGCGGCACCTGCCGAGCCTTTTCGACGATGGGAAGGGAG
GGAGTGGGGGAGAGAGGACAAGTGCAAGGTCCGTGCTCCGTAGACTGCGC
TGCGTTTGCCGCTGGTGCCGGTGGTGGTGGAGGAGGAGGAGGGGTGGGAG
GGAGGAAGGGATGGGGGAAGGGAAGGACCACGCGTGAAGGGGGAGAGGAT
GGTGTTGAGGATCATGCCGGTCAGGCCCTGGAGTTAGTCAGGAGGGGAGG
AAGGGAGGAAGGAGGGAAGGAGGGAGGAAGGGGTTAAATGCCGCAGCAGA
CTTCCTCTCCTCACTACACGTCTCTTCTCCTCCCCTACTCCCTCTTCTTC
GTCACTGCTGCTACTCTCCTCAACCTCCTCCTCCTCCTCTTCCTCCTCCT
CCTCTTCCTCCTCATCCTCTTCCTCCTCAACCTCGGGCTGCTCTTCATGA
TAATACCGTTGCCGAAGATATCTCGGCCTCTTCTTTCTCCCTGCTCGCCC
TCCCTCCCTCCCCTCCTTCCTTCCTCCATGGTTGGGATGGTGAGAGACGG
AGGCCACGAGCACTGCGGCACCTGCCGAGCCTTTTCGACGATGGGAAGGG
AGGGAGTGGGGGAGAGAGGACAAGTGCAAGGTCCGTGCTCCGTAGACTGC
GCTGCGTTTGCCGCTGGTGCCGGTGGTGGTGGAGGAGGAGGAGGGGTGGG
AGGGAGGAAGGGATGGGGGAAGGGAAGGACCACGCGTGAAGGGGGAGAGG
ATGGTGTTGAGGATCATGCCGGTCAGGCCCTGGAGTTAGTCAGGAGGGGA
GGAAGGGAGGAAGGAGGGAAGGAGGGAGGAAGGGGTTAAATGCCGCAGCA
GACTTCCTCTCCTCACTACACGTCTCTTCTCCTCCCCTACTCCCTCTTCT
TCGTCACTGCTGCTACTCTCCTCAACCTCCTCCTCCTCCTCTTCCTCCTC
CTCC
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Synonyms
Publications