jgi.p|Nanoce1779_2|613684, mRNA_10954 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613684
Unique NamemRNA_10954
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length559
Alignment locationscaffold_77:35429..35987 +

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Properties
Property NameValue
TranscriptId613770
TrackFilteredModels2
ProteinId613684
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:35429..35987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613684gene_10954Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613684mRNA_10954-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10954CDS_10954Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10954 ID=mRNA_10954|Name=jgi.p|Nanoce1779_2|613684|organism=Nannochloropsis oceanica|type=mRNA|length=559bp
CGGCCATCAGGGGCGCAGTCACATAACCTTCCAAGAGTCCGGCTGCATAC
CACCGTCGCAGGATCCAAGCAGCGTGTTCGTTGTCGTCTTTGCCGTCGTC
TTTGCCGTTGTTGTTGTTGTCGTCGTCCCTGTTCTGATGCCTTAAACCGA
TGGTCTTATCATGGCTTCTTCCCAAATCGCCTTTCTCCTCGTATTCCGCG
CCTTCGTCCTTGTGGTCATCGAGGTCGATGTCCGTGCGTATGGCCAACTG
CCACCATCCCGAATGGTTCACCGAGGCATTCGATATGAGGCCCTGAGCAA
GCAGCCTCCTCTTGGGGTCCATAGAGGAGGGGGTGGAGGACAGTATGTAG
CCCTGTGTCTCGCCCTGCCAGGCGACGGTCCAGAGGCGGCCAACTGGTGG
AAGGTGGGGAGGCAAGGGAGGGGAGGGAGGAAGGACGACTAGTGGGGCGC
AGTAGAGGGACTCGACGACGCCTTGTTCTCCTTTAGCGACGGATGAAAGA
GGAAAGAAGGATAGGAGAGCGACGAGTAGCACCGGGAGGAAAGGCATGGA
AGCAAGGCT
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protein sequence of jgi.p|Nanoce1779_2|613684

>mRNA_10954-protein ID=mRNA_10954-protein|Name=jgi.p|Nanoce1779_2|613684|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MASSQIAFLLVFRAFVLVVIEVDVRAYGQLPPSRMVHRGIRYEALSKQPP
LGVHRGGGGGQYVALCLALPGDGPEAANWWKVGRQGRGGRKDD*
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mRNA from alignment at scaffold_77:35429..35987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10954 ID=mRNA_10954|Name=jgi.p|Nanoce1779_2|613684|organism=Nannochloropsis oceanica|type=mRNA|length=559bp|location=Sequence derived from alignment at scaffold_77:35429..35987+ (Nannochloropsis oceanica)
CGGCCATCAGGGGCGCAGTCACATAACCTTCCAAGAGTCCGGCTGCATAC
CACCGTCGCAGGATCCAAGCAGCGTGTTCGTTGTCGTCTTTGCCGTCGTC
TTTGCCGTTGTTGTTGTTGTCGTCGTCCCTGTTCTGATGCCTTAAACCGA
TGGTCTTATCATGGCTTCTTCCCAAATCGCCTTTCTCCTCGTATTCCGCG
CCTTCGTCCTTGTGGTCATCGAGGTCGATGTCCGTGCGTATGGCCAACTG
CCACCATCCCGAATGGTTCACCGAGGCATTCGATATGAGGCCCTGAGCAA
GCAGCCTCCTCTTGGGGTCCATAGAGGAGGGGGTGGAGGACAGTATGTAG
CCCTGTGTCTCGCCCTGCCAGGCGACGGTCCAGAGGCGGCCAACTGGTGG
AAGGTGGGGAGGCAAGGGAGGGGAGGGAGGAAGGACGACTAGTGGGGCGC
AGTAGAGGGACTCGACGACGCCTTGTTCTCCTTTAGCGACGGATGAAAGA
GGAAAGAAGGATAGGAGAGCGACGAGTAGCACCGGGAGGAAAGGCATGGA
AGCAAGGCT
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Coding sequence (CDS) from alignment at scaffold_77:35429..35987+

>mRNA_10954 ID=mRNA_10954|Name=jgi.p|Nanoce1779_2|613684|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at scaffold_77:35429..35987+ (Nannochloropsis oceanica)
ATGGCTTCTTCCCAAATCGCCTTTCTCCTCGTATTCCGCGCCTTCGTCCT
TGTGGTCATCGAGGTCGATGTCCGTGCGTATGGCCAACTGCCACCATCCC
GAATGGTTCACCGAGGCATTCGATATGAGGCCCTGAGCAAGCAGCCTCCT
CTTGGGGTCCATAGAGGAGGGGGTGGAGGACAGTATGTAGCCCTGTGTCT
CGCCCTGCCAGGCGACGGTCCAGAGGCGGCCAACTGGTGGAAGGTGGGGA
GGCAAGGGAGGGGAGGGAGGAAGGACGACTAG
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Synonyms
Publications