jgi.p|Nanoce1779_2|613657, mRNA_10947 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|613657
Unique Name	mRNA_10947
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1181
Alignment location	scaffold_77:9379..10559 -

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Properties


Property Name	Value
TranscriptId	613743
Track	FilteredModels2
ProteinId	613657

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_77	supercontig	scaffold_77:9379..10559 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613657	gene_10947	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613657	mRNA_10947-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10947	CDS_10947	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_77:9379..10559-
coding sequence from alignment at scaffold_77:9379..10559-

mRNA sequence

>mRNA_10947 ID=mRNA_10947|Name=jgi.p|Nanoce1779_2|613657|organism=Nannochloropsis oceanica|type=mRNA|length=1181bp
GCTCACTCTTTTTTCTTTAACGTGCTCAAATGTTTCATTTTTACTTTCAT
CTTTCCCCATCGAAGTCTCTCGAATCGATGAAAAGAAAATACATTACAAT
TCCTTTCCTTCTGCTGCCACCGCTGTTATTGCTCCTCGCTGCTGGTGCTC
ATCAATACCGCTTTACTTGCCGAGACCATAATATCACTTCACTCTTGCTT
GCTTGTGCGCTGACTGTAAGTGCCATAAGCATCATCAATTTTCCTGTTCT
CGTATTCGAATCCCCTGCGTCTTTCCCCTCATTCAATTAGCCTCCTCCAG
CGTGTTTCCGCTGTTATTCCTTTTCAAGTCCATCTCGCGCTCCCTCCCAT
CCTCCCCATTGCTATCCCTCCATAAGCCCATCTCGAGCTTCTTCTTCATC
CTTCCTAGCCAGAATCCTCTTCTCTCACTTATGCTTGCAGAGAAAGAAGA
AAACCCATGCACGACAAAAGAAAATCCTCCTCCATCCCCCTCACTGAGCC
ACCGAGCCGTCAGCCCGTCTTTCTCTATTCTAAGCGCCCTCTCCACTGGC
GTCCTGGATGTTCTGCTCTAGCAAGACGGAGGCAATGAAGCCCACAAAGA
ACATTAGGTCCACGTACCACACATGCGGGCCCCCCTCCTCGTGCGCCTCC
ACCAGCAGCTCCTCCGTGATCAGATACAGCAGGGACGCCGCGCCAAAAGA
CAGCAAGCCCACCTATAGTGAGGGTGGAGAAATGGAGGGGATGAGTGCGA
TCTGAGTCTGCTTCCTGTCTATCTACCTCCCTCCTTCATGCCCTCTGTCG
CTTACCTGATAGGTGGGGTTGGCTGCCAGCAGTGCTGCTGCCAAGGCGCC
CACGGTCCCTCCCACAAGAATCATCAACGGCGCCCCAACCACCAGGGCGT
AGCGAAGCACAGGTTCCACCTGGCGTGCAAAAAAGCAGAGGGCGGGTGAA
GGGAGGGAAGGAGAGGAGGAGGGAGATTCAGTACCGGTCGTGAGGGAGCT
AGGAAGTGTGCTCTAGCTGTCCTCCGTAAGGGTGGGGTGTGGACGTGACT
CCCTCCTCTTCTTTTCCTCGCATTCCTTTGTCTACACTTGCACGGAGCAA
TCCTACCCTCCACAGTTTCCTTCTCCCTTCCTCCTTCCCTCCCTCCCTCC
CTCCCACTCGGCCTGCCTCCCTGCCTGCCTA

protein sequence of jgi.p|Nanoce1779_2|613657

>mRNA_10947-protein ID=mRNA_10947-protein|Name=jgi.p|Nanoce1779_2|613657|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MFHFYFHLSPSKSLESMKRKYITIPFLLLPPLLLLLAAGAHQYRFTCRDH
NITSLLLACALTVSAISIINFPVLVFESPASFPSFN*

mRNA from alignment at scaffold_77:9379..10559-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10947 ID=mRNA_10947|Name=jgi.p|Nanoce1779_2|613657|organism=Nannochloropsis oceanica|type=mRNA|length=1181bp|location=Sequence derived from alignment at scaffold_77:9379..10559- (Nannochloropsis oceanica)
GCTCACTCTTTTTTCTTTAACGTGCTCAAATGTTTCATTTTTACTTTCAT
CTTTCCCCATCGAAGTCTCTCGAATCGATGAAAAGAAAATACATTACAAT
TCCTTTCCTTCTGCTGCCACCGCTGTTATTGCTCCTCGCTGCTGGTGCTC
ATCAATACCGCTTTACTTGCCGAGACCATAATATCACTTCACTCTTGCTT
GCTTGTGCGCTGACTGTAAGTGCCATAAGCATCATCAATTTTCCTGTTCT
CGTATTCGAATCCCCTGCGTCTTTCCCCTCATTCAATTAGCCTCCTCCAG
CGTGTTTCCGCTGTTATTCCTTTTCAAGTCCATCTCGCGCTCCCTCCCAT
CCTCCCCATTGCTATCCCTCCATAAGCCCATCTCGAGCTTCTTCTTCATC
CTTCCTAGCCAGAATCCTCTTCTCTCACTTATGCTTGCAGAGAAAGAAGA
AAACCCATGCACGACAAAAGAAAATCCTCCTCCATCCCCCTCACTGAGCC
ACCGAGCCGTCAGCCCGTCTTTCTCTATTCTAAGCGCCCTCTCCACTGGC
GTCCTGGATGTTCTGCTCTAGCAAGACGGAGGCAATGAAGCCCACAAAGA
ACATTAGGTCCACGTACCACACATGCGGGCCCCCCTCCTCGTGCGCCTCC
ACCAGCAGCTCCTCCGTGATCAGATACAGCAGGGACGCCGCGCCAAAAGA
CAGCAAGCCCACCTATAGTGAGGGTGGAGAAATGGAGGGGATGAGTGCGA
TCTGAGTCTGCTTCCTGTCTATCTACCTCCCTCCTTCATGCCCTCTGTCG
CTTACCTGATAGGTGGGGTTGGCTGCCAGCAGTGCTGCTGCCAAGGCGCC
CACGGTCCCTCCCACAAGAATCATCAACGGCGCCCCAACCACCAGGGCGT
AGCGAAGCACAGGTTCCACCTGGCGTGCAAAAAAGCAGAGGGCGGGTGAA
GGGAGGGAAGGAGAGGAGGAGGGAGATTCAGTACCGGTCGTGAGGGAGCT
AGGAAGTGTGCTCTAGCTGTCCTCCGTAAGGGTGGGGTGTGGACGTGACT
CCCTCCTCTTCTTTTCCTCGCATTCCTTTGTCTACACTTGCACGGAGCAA
TCCTACCCTCCACAGTTTCCTTCTCCCTTCCTCCTTCCCTCCCTCCCTCC
CTCCCACTCGGCCTGCCTCCCTGCCTGCCTA

Coding sequence (CDS) from alignment at scaffold_77:9379..10559-

>mRNA_10947 ID=mRNA_10947|Name=jgi.p|Nanoce1779_2|613657|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at scaffold_77:9379..10559- (Nannochloropsis oceanica)
ATGTTTCATTTTTACTTTCATCTTTCCCCATCGAAGTCTCTCGAATCGAT
GAAAAGAAAATACATTACAATTCCTTTCCTTCTGCTGCCACCGCTGTTAT
TGCTCCTCGCTGCTGGTGCTCATCAATACCGCTTTACTTGCCGAGACCAT
AATATCACTTCACTCTTGCTTGCTTGTGCGCTGACTGTAAGTGCCATAAG
CATCATCAATTTTCCTGTTCTCGTATTCGAATCCCCTGCGTCTTTCCCCT
CATTCAATTAG

Synonyms

Publications