jgi.p|Nanoce1779_2|411923, mRNA_10960 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|411923
Unique Name	mRNA_10960
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	930
Alignment location	scaffold_77:51174..53445 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	412009
Track	FilteredModels2
ProteinId	411923

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_77	supercontig	scaffold_77:51174..53445 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|411923	gene_10960	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|411923	mRNA_10960-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10960	CDS_10960	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_77:51174..53445+
coding sequence from alignment at scaffold_77:51174..53445+

mRNA sequence

>mRNA_10960 ID=mRNA_10960|Name=jgi.p|Nanoce1779_2|411923|organism=Nannochloropsis oceanica|type=mRNA|length=930bp
AGTCACAGTTCCTTCGGGCTCTTTGCCTAAAATGTCATCTATTCTTTTTC
TCATTCCCTTCCAAGCCATGGCTATATTGTCCACTACCACACGTTTTCTA
TTTCTAACCTGTTCTTCCCTTTCTCTCCTCGAAAAAGTTGCGCGCGGCAA
ACACAGGGCCTCTTCCCCCTTTGTACCAGCAAACTCCTCGACCTGGTCAC
ACGGAAATCGGACCTGAAAGGAGCAGCTTAGACCATGTCGAAGGTAAAGA
GGGATTCGAAATCTAGCTCTCGGAGGGCGAAATTTAGCTGCCCCATCATG
GAGACAATCATGGAAGACCCCGTCATTGCCATGGATGGCTACTCCTATGA
GCGGAAGGCCATCGAAGAATGGTTTCGACGTGGCCACCGTGCTTCTCCCG
TCACCCGCCGAGATGTCGAGTCCACGTTAATCATCCCCAATATTCGCCTC
AAGGAGCTGGCGCGGGCGAAAAAACTGCTGCCCGCCAAGCCCACTGACTA
CACTCCCTACATGGTGAGAGCAGCTGTCTCAAGGTTCCAGCAGAAGTTGG
GGATTCGCCACCACTCTCTCGATCTTCCGCTGGAAAGAAAGAAGCGCAAG
TGGTGGAAGACGCCCCCCGCTCAGTCGCCTCGATCATCGCCAGCCTCTCC
CGCCCTCCCTCCGGCCCTCCCCCTCGACGGACCCCCACGCCCTCCAAATT
CCTGGTCCCGACAGCCTTCGCCTCCCAGGCGTCGAAGGAGAAAGGGAAGA
AAGGAGGATTGTAAGGGCAGTAAGAGGAGGAGGGAGGGGAGCAGATGAGG
GGCTGACCTTGCCTTTCATCAAATACTCAGCGGTGGTGATCGAGCAAAGG
CGAACCCAAAGCGGCACAAAGCCGCCGTTTGAAGACAAGCCGATAAGGAA
GTGGAGGAGATAGTAAGCGGTGAGAGCTGT

protein sequence of jgi.p|Nanoce1779_2|411923

>mRNA_10960-protein ID=mRNA_10960-protein|Name=jgi.p|Nanoce1779_2|411923|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MSKVKRDSKSSSRRAKFSCPIMETIMEDPVIAMDGYSYERKAIEEWFRRG
HRASPVTRRDVESTLIIPNIRLKELARAKKLLPAKPTDYTPYMVRAAVSR
FQQKLGIRHHSLDLPLERKKRKWWKTPPAQSPRSSPASPALPPALPLDGP
PRPPNSWSRQPSPPRRRRRKGRKEDCKGSKRRREGSR*

mRNA from alignment at scaffold_77:51174..53445+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10960 ID=mRNA_10960|Name=jgi.p|Nanoce1779_2|411923|organism=Nannochloropsis oceanica|type=mRNA|length=2272bp|location=Sequence derived from alignment at scaffold_77:51174..53445+ (Nannochloropsis oceanica)
AGTCACAGTTCCTTCGGGCTCTTTGCCTAAAATGTCATCTATTCTTTTTC
TCATTCCCTTCCAAGCCATGGCTATATTGTCCACTACCACACGTTTTCTA
TTTCTAACCTGTTCTTCCCTTTCTCTCCTCGAAAAAGTTGCGCGCGGCAA
ACACAGGGCCTCTTCCCCCTTTGTACCAGCAAACTCCTCGACCTGGTCAC
ACGGAAATCGGACCTGAAAGGAGCAGCTTAGACCATGTCGAAGGTAAAGA
GGGATTCGAAATCTAGCTCTCGGAGGGCGAAATTTAGCTGCCCCATCATG
GAGACAATCATGGAAGGTACGTGAGTTATGTTGGCTCTCCGTCCCTCCCT
GCCTTATAAAATATATGCTTTTTCCCTTCCTCACACTCTATCCTTACCTC
TCTCCCTCCCCAAGACCCCGTCATTGCCATGGATGGCTACTCCTATGAGC
GGAAGGCCATCGAAGAATGGTTTCGACGTGGCCACCGTGCTTCTCCCGTC
ACCCGCCGAGATGTCGAGTCCACGTTAATCATCCCCAATATTCGCCTCAA
GGAGCTGGCGCGGGTACGAACCTTCCTTCCCTCCCCTTCCTTCCTTCCTT
TTTCCTCTCTTTATTGGATGTATTATATGTCTCGTTCATCAGCGCCTACT
TCCTCATTCTCTCTATTTCCTGAGACATTAATTTTAATTGCCCATGTCTC
ATCTCTCCCCACGCTCCCTACCTCTCTCTTCCCCCTCCCTCCAGGCGAAA
AAACTGCTGCCCGCCAAGCCCACTGACTACACTCCCTACATGGTGAGAGC
AGCTGTCTCAAGGTTCCAGCAGAAGTTGGGGATTCGCCACCACTCTCTCG
ATCTTTCGATGGAAGGGAGGGAGGGGAGGAAGGAGGAGGAGATGAAGGAG
GAGGAGGGGGAGGGCGTTGGTAGTAGCAGCCATCAGCTCATTAGTAGCAA
CAATACGGTGGAAGATAAGGAGAAGAAGGAAGAGGAGGTGGTGGAGGTGG
AGGAGGAAGAGGTGGTAGTGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGG
TGGTGGTGGAGAAGGCAGTTGCAGAGGCGGTTGCAAAGGCGGTTGCAAAG
GCGACTCCGAAGGCGACTCCGAAGGCTGAAGAGGAGGAGGAGGAGGGGGA
GGAAGAGGAGGAGGGGGAGGAAGAGGAGGAGGGGGAAGAGGATGAGGAGG
AGTTGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGCG
GCGGAGGAGGCGGAGGTGTTGGCGGAGGCGGAGGCGGAGGCGGAGGCGGA
GGCGGCGGAGAAGGAGGTGGAGGTAGAGGAAGTAGAAGTAGAGGCTGAGG
CAGAGACGGAGGAAGAGGTAGACGAGGAGGTGGAGGTGGAGGCGGAGATG
GCGGTGGAGGAGGAGGTTAAGGAGGCGGAGTCGGAGGAAGAGGAGGCGGA
GGCGGAGTTGGAGGTTGAGGCTGAGGTGGCGGTGGAGGTGGAGGAGGAGG
TTAAGGAGGCGGAGACGGAGGAGGCGGAGGCGGAGGCGGAGGCGGAGGTG
GCGGTAGAGGTGGAGGCAGAGGAGAAGAAGAAGTTGGAGAAGGAGGAGGA
GGTGATGGTGGAGAAGAAGAAAGAGGAGCAGAAGAAGATTGCAGTGGAGG
AGGTGGAGGAAGAGCACCGCTTTGTTTCAGTGAAGGAGCGTGTAGCAGCA
CTACAGCAAAAGCGTCAAAGCCTTTCTATCTCCTCTTCCTCTACCGCCTT
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCCGCCCTTCCGCTGGAAAGAAAGAAGCGCAAGTGGTGGAA
GACGCCCCCCGCTCAGTCGCCTCGATCATCGCCAGCCTCTCCCGCCCTCC
CTCCGGCCCTCCCCCTCGACGGACCCCCACGCCCTCCAAATTCCTGGTCC
CGACAGCCTTCGCCTCCCAGGCGTCGAAGGAGAAAGGGAAGAAAGGAGGA
TTGTAAGGGCAGTAAGAGGAGGAGGGAGGGGAGCAGATGAGGGGCTGACC
TTGCCTTTCATCAAATACTCAGCGGTGGTGATCGAGCAAAGGCGAACCCA
AAGCGGCACAAAGCCGCCGTTTGAAGACAAGCCGATAAGGAAGTGGAGGA
GATAGTAAGCGGTGAGAGCTGT

Coding sequence (CDS) from alignment at scaffold_77:51174..53445+

>mRNA_10960 ID=mRNA_10960|Name=jgi.p|Nanoce1779_2|411923|organism=Nannochloropsis oceanica|type=CDS|length=2256bp|location=Sequence derived from alignment at scaffold_77:51174..53445+ (Nannochloropsis oceanica)
ATGTCGAAGGTAAAGAGGGATTCGAAATCTAGCTCTCGGAGGGCGAAATT
TAGCTGCCCCATCATGGAGACAATCATGGAAGACCCCGTCATTGCCATGG
ATGGCTACTCCTATGAGCGGAAGGCCATCGAAGAATGGTTTCGACGTGGC
CACCGTGCTTCTCCCGTCACCCGCCGAGATGTCGAGTCCACGTTAATCAT
CCCCAATATTCGCCTCAAGGAGCTGGCGCGGGCGAAAAAACTGCTGCCCG
CCAAGCCCACTGACTACACTCCCTACATGGTGAGAGCAGCTGTCTCAAGG
TTCCAGCAGAAGTTGGGGATTCGCCACCACTCTCTCGATCTTCCGCTGGA
AAGAAAGAAGCGCAAGTGGTGGAAGACGCCCCCCGCTCAGTCGCCTCGAT
CATCGCCAGCCTCTCCCGCCCTCCCTCCGGCCCTCCCCCTCGACGGACCC
CCACGCCCTCCAAATTCCTGGTCCCGACAGCCTTCGCCTCCCAGGCGTCG
AAGGAGAAAGGGAAGAAAGGAGGATTGTAAGGGCAGTAAGAGGAGGAGGG
AGGGGAGCAGATGAATGTCGAAGGTAAAGAGGGATTCGAAATCTAGCTCT
CGGAGGGCGAAATTTAGCTGCCCCATCATGGAGACAATCATGGAAGACCC
CGTCATTGCCATGGATGGCTACTCCTATGAGCGGAAGGCCATCGAAGAAT
GGTTTCGACGTGGCCACCGTGCTTCTCCCGTCACCCGCCGAGATGTCGAG
TCCACGTTAATCATCCCCAATATTCGCCTCAAGGAGCTGGCGCGGGCGAA
AAAACTGCTGCCCGCCAAGCCCACTGACTACACTCCCTACATGGTGAGAG
CAGCTGTCTCAAGGTTCCAGCAGAAGTTGGGGATTCGCCACCACTCTCTC
GATCTTCCGCTGGAAAGAAAGAAGCGCAAGTGGTGGAAGACGCCCCCCGC
TCAGTCGCCTCGATCATCGCCAGCCTCTCCCGCCCTCCCTCCGGCCCTCC
CCCTCGACGGACCCCCACGCCCTCCAAATTCCTGGTCCCGACAGCCTTCG
CCTCCCAGGCGTCGAAGGAGAAAGGGAAGAAAGGAGGATTGTAAGGGCAG
TAAGAGGAGGAGGGAGGGGAGCAGATGAATGTCGAAGGTAAAGAGGGATT
CGAAATCTAGCTCTCGGAGGGCGAAATTTAGCTGCCCCATCATGGAGACA
ATCATGGAAGACCCCGTCATTGCCATGGATGGCTACTCCTATGAGCGGAA
GGCCATCGAAGAATGGTTTCGACGTGGCCACCGTGCTTCTCCCGTCACCC
GCCGAGATGTCGAGTCCACGTTAATCATCCCCAATATTCGCCTCAAGGAG
CTGGCGCGGGCGAAAAAACTGCTGCCCGCCAAGCCCACTGACTACACTCC
CTACATGGTGAGAGCAGCTGTCTCAAGGTTCCAGCAGAAGTTGGGGATTC
GCCACCACTCTCTCGATCTTCCGCTGGAAAGAAAGAAGCGCAAGTGGTGG
AAGACGCCCCCCGCTCAGTCGCCTCGATCATCGCCAGCCTCTCCCGCCCT
CCCTCCGGCCCTCCCCCTCGACGGACCCCCACGCCCTCCAAATTCCTGGT
CCCGACAGCCTTCGCCTCCCAGGCGTCGAAGGAGAAAGGGAAGAAAGGAG
GATTGTAAGGGCAGTAAGAGGAGGAGGGAGGGGAGCAGATGAATGTCGAA
GGTAAAGAGGGATTCGAAATCTAGCTCTCGGAGGGCGAAATTTAGCTGCC
CCATCATGGAGACAATCATGGAAGACCCCGTCATTGCCATGGATGGCTAC
TCCTATGAGCGGAAGGCCATCGAAGAATGGTTTCGACGTGGCCACCGTGC
TTCTCCCGTCACCCGCCGAGATGTCGAGTCCACGTTAATCATCCCCAATA
TTCGCCTCAAGGAGCTGGCGCGGGCGAAAAAACTGCTGCCCGCCAAGCCC
ACTGACTACACTCCCTACATGGTGAGAGCAGCTGTCTCAAGGTTCCAGCA
GAAGTTGGGGATTCGCCACCACTCTCTCGATCTTCCGCTGGAAAGAAAGA
AGCGCAAGTGGTGGAAGACGCCCCCCGCTCAGTCGCCTCGATCATCGCCA
GCCTCTCCCGCCCTCCCTCCGGCCCTCCCCCTCGACGGACCCCCACGCCC
TCCAAATTCCTGGTCCCGACAGCCTTCGCCTCCCAGGCGTCGAAGGAGAA
AGGGAAGAAAGGAGGATTGTAAGGGCAGTAAGAGGAGGAGGGAGGGGAGC
AGATGA

Synonyms

Publications