scaffold_72, scaffold_72 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_72
Unique Name	scaffold_72
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	72197
Alignment location	jgi.p\|Nanoce1779_2\|405499:12720..13387 -
Alignment location	jgi.p\|Nanoce1779_2\|405499:12720..13387 -
Alignment location	CDS_10832:12876..13280 -
Alignment location	jgi.p\|Nanoce1779_2\|405598:4103..4560 +
Alignment location	jgi.p\|Nanoce1779_2\|405598:4103..4560 +
Alignment location	CDS_10828:4192..4485 +
Alignment location	jgi.p\|Nanoce1779_2\|405642:4998..7347 -
Alignment location	jgi.p\|Nanoce1779_2\|405642:4998..7347 -
Alignment location	CDS_10829:7118..7124 -
Alignment location	CDS_10829:6919..7003 -
Alignment location	CDS_10829:6674..6753 -
Alignment location	CDS_10829:6421..6525 -
Alignment location	CDS_10829:6102..6209 -
Alignment location	CDS_10829:5885..5967 -
Alignment location	CDS_10829:5590..5655 -
Alignment location	CDS_10829:5247..5399 -
Alignment location	jgi.p\|Nanoce1779_2\|405915:9600..11451 -
Alignment location	jgi.p\|Nanoce1779_2\|405915:9600..11451 -
Alignment location	CDS_10830:9692..11107 -
Alignment location	jgi.p\|Nanoce1779_2\|406969:2724..4102 +
Alignment location	jgi.p\|Nanoce1779_2\|406969:2724..4102 +
Alignment location	CDS_10827:2970..3095 +
Alignment location	CDS_10827:3264..3635 +
Alignment location	CDS_10827:3840..4013 +
Alignment location	jgi.p\|Nanoce1779_2\|407434:27889..29402 +
Alignment location	jgi.p\|Nanoce1779_2\|407434:27889..29402 +
Alignment location	CDS_10834:28129..28499 +
Alignment location	CDS_10834:28739..29009 +
Alignment location	jgi.p\|Nanoce1779_2\|407449:29341..31154 +
Alignment location	jgi.p\|Nanoce1779_2\|407449:29341..31154 +
Alignment location	CDS_10835:29608..29778 +
Alignment location	CDS_10835:29927..30167 +
Alignment location	CDS_10835:30270..30646 +
Alignment location	jgi.p\|Nanoce1779_2\|613264:32610..35042 -
Alignment location	jgi.p\|Nanoce1779_2\|613264:32610..35042 -
Alignment location	CDS_10837:34854..34920 -
Alignment location	CDS_10837:34224..34280 -
Alignment location	CDS_10837:33829..33936 -
Alignment location	CDS_10837:33592..33722 -
Alignment location	jgi.p\|Nanoce1779_2\|613274:38532..40085 +
Alignment location	jgi.p\|Nanoce1779_2\|613274:38532..40085 +
Alignment location	CDS_10838:38673..39446 +
Alignment location	jgi.p\|Nanoce1779_2\|613278:40509..41416 +
Alignment location	jgi.p\|Nanoce1779_2\|613278:40509..41416 +
Alignment location	CDS_10839:40566..40698 +
Alignment location	CDS_10839:40908..41086 +
Alignment location	jgi.p\|Nanoce1779_2\|613314:56894..57890 +
Alignment location	jgi.p\|Nanoce1779_2\|613314:56894..57890 +
Alignment location	CDS_10846:57132..57701 +
Alignment location	jgi.p\|Nanoce1779_2\|613316:63017..64527 -
Alignment location	jgi.p\|Nanoce1779_2\|613316:63017..64527 -
Alignment location	CDS_10847:64011..64527 -
Alignment location	CDS_10847:63689..63783 -
Alignment location	jgi.p\|Nanoce1779_2\|634352:49847..54064 -
Alignment location	jgi.p\|Nanoce1779_2\|634352:49847..54064 -
Alignment location	CDS_10844:52942..54059 -
Alignment location	CDS_10844:52578..52704 -
Alignment location	CDS_10844:50898..52286 -
Alignment location	jgi.p\|Nanoce1779_2\|634354:66850..68161 -
Alignment location	jgi.p\|Nanoce1779_2\|634354:66850..68161 -
Alignment location	CDS_10848:67422..68148 -
Alignment location	CDS_10848:67183..67327 -
Alignment location	CDS_10848:66852..66990 -
Alignment location	jgi.p\|Nanoce1779_2\|643607:11786..12564 +
Alignment location	jgi.p\|Nanoce1779_2\|643607:11786..12564 +
Alignment location	CDS_10831:11786..11790 +
Alignment location	CDS_10831:12071..12131 +
Alignment location	CDS_10831:12214..12564 +
Alignment location	jgi.p\|Nanoce1779_2\|643615:49069..50000 -
Alignment location	jgi.p\|Nanoce1779_2\|643615:49069..50000 -
Alignment location	CDS_10842:49972..50000 -
Alignment location	CDS_10842:49069..49360 -
Alignment location	jgi.p\|Nanoce1779_2\|675073:13388..18206 -
Alignment location	jgi.p\|Nanoce1779_2\|675073:13388..18206 -
Alignment location	CDS_10833:17715..17783 -
Alignment location	CDS_10833:17536..17595 -
Alignment location	CDS_10833:17279..17397 -
Alignment location	CDS_10833:16910..17048 -
Alignment location	CDS_10833:16569..16673 -
Alignment location	CDS_10833:16395..16454 -
Alignment location	CDS_10833:16169..16270 -
Alignment location	CDS_10833:15893..15999 -
Alignment location	CDS_10833:15549..15696 -
Alignment location	CDS_10833:15322..15399 -
Alignment location	CDS_10833:15012..15077 -
Alignment location	CDS_10833:14544..14669 -
Alignment location	CDS_10833:14352..14390 -
Alignment location	jgi.p\|Nanoce1779_2\|675078:44009..48445 +
Alignment location	jgi.p\|Nanoce1779_2\|675078:44009..48445 +
Alignment location	CDS_10841:44009..44078 +
Alignment location	CDS_10841:45228..45462 +
Alignment location	CDS_10841:45711..45759 +
Alignment location	CDS_10841:45982..46144 +
Alignment location	CDS_10841:46359..46483 +
Alignment location	CDS_10841:46658..46736 +
Alignment location	CDS_10841:47151..47239 +
Alignment location	CDS_10841:47373..47501 +
Alignment location	CDS_10841:47696..47824 +
Alignment location	CDS_10841:47990..48063 +
Alignment location	CDS_10841:48211..48445 +
Alignment location	jgi.p\|Nanoce1779_2\|405499:12876..13280 -
Alignment location	jgi.p\|Nanoce1779_2\|405598:4192..4485 +
Alignment location	jgi.p\|Nanoce1779_2\|405642:5247..7124 -
Alignment location	jgi.p\|Nanoce1779_2\|405915:9692..11107 -
Alignment location	jgi.p\|Nanoce1779_2\|406969:2970..4013 +
Alignment location	jgi.p\|Nanoce1779_2\|407434:28129..29009 +
Alignment location	jgi.p\|Nanoce1779_2\|407449:29608..30646 +
Alignment location	jgi.p\|Nanoce1779_2\|613264:33592..34920 -
Alignment location	jgi.p\|Nanoce1779_2\|613274:38673..39446 +
Alignment location	jgi.p\|Nanoce1779_2\|613278:40566..41086 +
Alignment location	jgi.p\|Nanoce1779_2\|613314:57132..57701 +
Alignment location	jgi.p\|Nanoce1779_2\|613316:63689..64527 -
Alignment location	jgi.p\|Nanoce1779_2\|634352:50898..54059 -
Alignment location	jgi.p\|Nanoce1779_2\|634354:66852..68148 -
Alignment location	jgi.p\|Nanoce1779_2\|643607:11786..12564 +
Alignment location	jgi.p\|Nanoce1779_2\|643615:49069..50000 -
Alignment location	jgi.p\|Nanoce1779_2\|675073:14352..17783 -
Alignment location	jgi.p\|Nanoce1779_2\|675078:44009..48445 +
Alignment location	ncniL095:2725..64527 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|405499	gene	jgi.p\|Nanoce1779_2\|405499:12720..13387 -
jgi.p\|Nanoce1779_2\|405499	mRNA	jgi.p\|Nanoce1779_2\|405499:12720..13387 -
CDS_10832	CDS	CDS_10832:12876..13280 -
jgi.p\|Nanoce1779_2\|405598	gene	jgi.p\|Nanoce1779_2\|405598:4103..4560 +
jgi.p\|Nanoce1779_2\|405598	mRNA	jgi.p\|Nanoce1779_2\|405598:4103..4560 +
CDS_10828	CDS	CDS_10828:4192..4485 +
jgi.p\|Nanoce1779_2\|405642	gene	jgi.p\|Nanoce1779_2\|405642:4998..7347 -
jgi.p\|Nanoce1779_2\|405642	mRNA	jgi.p\|Nanoce1779_2\|405642:4998..7347 -
CDS_10829	CDS	CDS_10829:7118..7124 -
CDS_10829	CDS	CDS_10829:6919..7003 -
CDS_10829	CDS	CDS_10829:6674..6753 -
CDS_10829	CDS	CDS_10829:6421..6525 -
CDS_10829	CDS	CDS_10829:6102..6209 -
CDS_10829	CDS	CDS_10829:5885..5967 -
CDS_10829	CDS	CDS_10829:5590..5655 -
CDS_10829	CDS	CDS_10829:5247..5399 -
jgi.p\|Nanoce1779_2\|405915	gene	jgi.p\|Nanoce1779_2\|405915:9600..11451 -
jgi.p\|Nanoce1779_2\|405915	mRNA	jgi.p\|Nanoce1779_2\|405915:9600..11451 -
CDS_10830	CDS	CDS_10830:9692..11107 -
jgi.p\|Nanoce1779_2\|406969	gene	jgi.p\|Nanoce1779_2\|406969:2724..4102 +
jgi.p\|Nanoce1779_2\|406969	mRNA	jgi.p\|Nanoce1779_2\|406969:2724..4102 +
CDS_10827	CDS	CDS_10827:2970..3095 +
CDS_10827	CDS	CDS_10827:3264..3635 +
CDS_10827	CDS	CDS_10827:3840..4013 +
jgi.p\|Nanoce1779_2\|407434	gene	jgi.p\|Nanoce1779_2\|407434:27889..29402 +
jgi.p\|Nanoce1779_2\|407434	mRNA	jgi.p\|Nanoce1779_2\|407434:27889..29402 +
CDS_10834	CDS	CDS_10834:28129..28499 +
CDS_10834	CDS	CDS_10834:28739..29009 +
jgi.p\|Nanoce1779_2\|407449	gene	jgi.p\|Nanoce1779_2\|407449:29341..31154 +
jgi.p\|Nanoce1779_2\|407449	mRNA	jgi.p\|Nanoce1779_2\|407449:29341..31154 +
CDS_10835	CDS	CDS_10835:29608..29778 +
CDS_10835	CDS	CDS_10835:29927..30167 +
CDS_10835	CDS	CDS_10835:30270..30646 +
jgi.p\|Nanoce1779_2\|613264	gene	jgi.p\|Nanoce1779_2\|613264:32610..35042 -
jgi.p\|Nanoce1779_2\|613264	mRNA	jgi.p\|Nanoce1779_2\|613264:32610..35042 -
CDS_10837	CDS	CDS_10837:34854..34920 -
CDS_10837	CDS	CDS_10837:34224..34280 -
CDS_10837	CDS	CDS_10837:33829..33936 -
CDS_10837	CDS	CDS_10837:33592..33722 -
jgi.p\|Nanoce1779_2\|613274	gene	jgi.p\|Nanoce1779_2\|613274:38532..40085 +
jgi.p\|Nanoce1779_2\|613274	mRNA	jgi.p\|Nanoce1779_2\|613274:38532..40085 +
CDS_10838	CDS	CDS_10838:38673..39446 +
jgi.p\|Nanoce1779_2\|613278	gene	jgi.p\|Nanoce1779_2\|613278:40509..41416 +
jgi.p\|Nanoce1779_2\|613278	mRNA	jgi.p\|Nanoce1779_2\|613278:40509..41416 +
CDS_10839	CDS	CDS_10839:40566..40698 +
CDS_10839	CDS	CDS_10839:40908..41086 +
jgi.p\|Nanoce1779_2\|613314	gene	jgi.p\|Nanoce1779_2\|613314:56894..57890 +
jgi.p\|Nanoce1779_2\|613314	mRNA	jgi.p\|Nanoce1779_2\|613314:56894..57890 +
CDS_10846	CDS	CDS_10846:57132..57701 +
jgi.p\|Nanoce1779_2\|613316	gene	jgi.p\|Nanoce1779_2\|613316:63017..64527 -
jgi.p\|Nanoce1779_2\|613316	mRNA	jgi.p\|Nanoce1779_2\|613316:63017..64527 -
CDS_10847	CDS	CDS_10847:64011..64527 -
CDS_10847	CDS	CDS_10847:63689..63783 -
jgi.p\|Nanoce1779_2\|634352	gene	jgi.p\|Nanoce1779_2\|634352:49847..54064 -
jgi.p\|Nanoce1779_2\|634352	mRNA	jgi.p\|Nanoce1779_2\|634352:49847..54064 -
CDS_10844	CDS	CDS_10844:52942..54059 -
CDS_10844	CDS	CDS_10844:52578..52704 -
CDS_10844	CDS	CDS_10844:50898..52286 -
jgi.p\|Nanoce1779_2\|634354	gene	jgi.p\|Nanoce1779_2\|634354:66850..68161 -
jgi.p\|Nanoce1779_2\|634354	mRNA	jgi.p\|Nanoce1779_2\|634354:66850..68161 -
CDS_10848	CDS	CDS_10848:67422..68148 -
CDS_10848	CDS	CDS_10848:67183..67327 -
CDS_10848	CDS	CDS_10848:66852..66990 -
jgi.p\|Nanoce1779_2\|643607	gene	jgi.p\|Nanoce1779_2\|643607:11786..12564 +
jgi.p\|Nanoce1779_2\|643607	mRNA	jgi.p\|Nanoce1779_2\|643607:11786..12564 +
CDS_10831	CDS	CDS_10831:11786..11790 +
CDS_10831	CDS	CDS_10831:12071..12131 +
CDS_10831	CDS	CDS_10831:12214..12564 +
jgi.p\|Nanoce1779_2\|643615	gene	jgi.p\|Nanoce1779_2\|643615:49069..50000 -
jgi.p\|Nanoce1779_2\|643615	mRNA	jgi.p\|Nanoce1779_2\|643615:49069..50000 -
CDS_10842	CDS	CDS_10842:49972..50000 -
CDS_10842	CDS	CDS_10842:49069..49360 -
jgi.p\|Nanoce1779_2\|675073	gene	jgi.p\|Nanoce1779_2\|675073:13388..18206 -
jgi.p\|Nanoce1779_2\|675073	mRNA	jgi.p\|Nanoce1779_2\|675073:13388..18206 -
CDS_10833	CDS	CDS_10833:17715..17783 -
CDS_10833	CDS	CDS_10833:17536..17595 -
CDS_10833	CDS	CDS_10833:17279..17397 -
CDS_10833	CDS	CDS_10833:16910..17048 -
CDS_10833	CDS	CDS_10833:16569..16673 -
CDS_10833	CDS	CDS_10833:16395..16454 -
CDS_10833	CDS	CDS_10833:16169..16270 -
CDS_10833	CDS	CDS_10833:15893..15999 -
CDS_10833	CDS	CDS_10833:15549..15696 -
CDS_10833	CDS	CDS_10833:15322..15399 -
CDS_10833	CDS	CDS_10833:15012..15077 -
CDS_10833	CDS	CDS_10833:14544..14669 -
CDS_10833	CDS	CDS_10833:14352..14390 -
jgi.p\|Nanoce1779_2\|675078	gene	jgi.p\|Nanoce1779_2\|675078:44009..48445 +
jgi.p\|Nanoce1779_2\|675078	mRNA	jgi.p\|Nanoce1779_2\|675078:44009..48445 +
CDS_10841	CDS	CDS_10841:44009..44078 +
CDS_10841	CDS	CDS_10841:45228..45462 +
CDS_10841	CDS	CDS_10841:45711..45759 +
CDS_10841	CDS	CDS_10841:45982..46144 +
CDS_10841	CDS	CDS_10841:46359..46483 +
CDS_10841	CDS	CDS_10841:46658..46736 +
CDS_10841	CDS	CDS_10841:47151..47239 +
CDS_10841	CDS	CDS_10841:47373..47501 +
CDS_10841	CDS	CDS_10841:47696..47824 +
CDS_10841	CDS	CDS_10841:47990..48063 +
CDS_10841	CDS	CDS_10841:48211..48445 +
jgi.p\|Nanoce1779_2\|405499	polypeptide	jgi.p\|Nanoce1779_2\|405499:12876..13280 -
jgi.p\|Nanoce1779_2\|405598	polypeptide	jgi.p\|Nanoce1779_2\|405598:4192..4485 +
jgi.p\|Nanoce1779_2\|405642	polypeptide	jgi.p\|Nanoce1779_2\|405642:5247..7124 -
jgi.p\|Nanoce1779_2\|405915	polypeptide	jgi.p\|Nanoce1779_2\|405915:9692..11107 -
jgi.p\|Nanoce1779_2\|406969	polypeptide	jgi.p\|Nanoce1779_2\|406969:2970..4013 +
jgi.p\|Nanoce1779_2\|407434	polypeptide	jgi.p\|Nanoce1779_2\|407434:28129..29009 +
jgi.p\|Nanoce1779_2\|407449	polypeptide	jgi.p\|Nanoce1779_2\|407449:29608..30646 +
jgi.p\|Nanoce1779_2\|613264	polypeptide	jgi.p\|Nanoce1779_2\|613264:33592..34920 -
jgi.p\|Nanoce1779_2\|613274	polypeptide	jgi.p\|Nanoce1779_2\|613274:38673..39446 +
jgi.p\|Nanoce1779_2\|613278	polypeptide	jgi.p\|Nanoce1779_2\|613278:40566..41086 +
jgi.p\|Nanoce1779_2\|613314	polypeptide	jgi.p\|Nanoce1779_2\|613314:57132..57701 +
jgi.p\|Nanoce1779_2\|613316	polypeptide	jgi.p\|Nanoce1779_2\|613316:63689..64527 -
jgi.p\|Nanoce1779_2\|634352	polypeptide	jgi.p\|Nanoce1779_2\|634352:50898..54059 -
jgi.p\|Nanoce1779_2\|634354	polypeptide	jgi.p\|Nanoce1779_2\|634354:66852..68148 -
jgi.p\|Nanoce1779_2\|643607	polypeptide	jgi.p\|Nanoce1779_2\|643607:11786..12564 +
jgi.p\|Nanoce1779_2\|643615	polypeptide	jgi.p\|Nanoce1779_2\|643615:49069..50000 -
jgi.p\|Nanoce1779_2\|675073	polypeptide	jgi.p\|Nanoce1779_2\|675073:14352..17783 -
jgi.p\|Nanoce1779_2\|675078	polypeptide	jgi.p\|Nanoce1779_2\|675078:44009..48445 +
ncniL095	syntenic_region	ncniL095:2725..64527 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications