jgi.p|Nanoce1779_2|613314, mRNA_10846 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|613314
Unique Name	mRNA_10846
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	997
Alignment location	scaffold_72:56894..57890 +

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Properties


Property Name	Value
TranscriptId	613400
Track	FilteredModels2
ProteinId	613314

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_72	supercontig	scaffold_72:56894..57890 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613314	gene_10846	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613314	mRNA_10846-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10846	CDS_10846	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_72:56894..57890+
coding sequence from alignment at scaffold_72:56894..57890+

mRNA sequence

>mRNA_10846 ID=mRNA_10846|Name=jgi.p|Nanoce1779_2|613314|organism=Nannochloropsis oceanica|type=mRNA|length=997bp
AGGCTATACGCCCGGGCCAATCAACGACTTCAATCAATAAATATTGCTGT
CAACATTGTCGATATGAAAGGTGAAGTGTCCTTCAATGGATGGTGGCGGC
GAATGCGCTGCAGCCACTTCATCCGAGTTACTCTCACAAACATACCCCCC
AACCACCATCAGCTGACACTCTGCTGACACTCTGCATCCACACATGTACA
TGTAATTACACGCACCATATGAACGCGCCTGAGTACGAATGTACACCTGT
ATGCACGCATCTATGCACTCCGCACAAGCACCAGCAGCTGCAGCGGCTGC
CACCATCAACAGCAGCTGCAGCAGTACAGAAGTGGCATCTGTGAAGGAAG
CGGAAACAGCATTGGTAGTAGTGGTTTCAGCAGTTGTAATGGCTGCAGCA
GCACAGGCAACAGCTATTGTAGTGGTAGCAGTAGCAGCAGCAGGAGCCAT
AGCAATGGCGACACAAGCCCCACAAGCACCGCCACAACCACAACGCACCG
CGTCGCCACCGCCACCACTACCACTACCACTACCACCAGGTCCATCACAA
CCAGCGCAGAAGGCAGGGAGTGGTGGTATTGCAGCAGCAACTATGGCTAT
ACCAACGGCACTTCCGACCAATCAACAACAACCACTAACACGGGCCACCG
TCGTTGCCACCGAGTCTACAGCTACTACCCGAAGCAAGTGCCGCTTTCCC
AAAAAAGTGAGGAGCAGGCCTACTTTCTCCGGCAGTGCCCGCCAATCATC
AGCGTCCAGTCTCAGAAACCGTTCGGCACCAAAAAATATAATATGTGCTG
TGCCTTGATCGACTAAATATGGGGTATGTCCATCTTCTTCCTGCCCATTC
TAGGAAAGAAGGTCTTGATCTCCCCCGTCGCTTTAGGTGGAGGGAGGAAT
GAGCTGGCCCATGTCCATGCGTATATTTGAATGACAGAGGAGGAACGTAA
AGCAACTGAGAACATTAAAAGTAAAGAATTGTAATGATGGGCTTGCC

protein sequence of jgi.p|Nanoce1779_2|613314

>mRNA_10846-protein ID=mRNA_10846-protein|Name=jgi.p|Nanoce1779_2|613314|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MYTCMHASMHSAQAPAAAAAATINSSCSSTEVASVKEAETALVVVVSAVV
MAAAAQATAIVVVAVAAAGAIAMATQAPQAPPQPQRTASPPPPLPLPLPP
GPSQPAQKAGSGGIAAATMAIPTALPTNQQQPLTRATVVATESTATTRSK
CRFPKKVRSRPTFSGSARQSSASSLRNRSAPKNIICAVP*

mRNA from alignment at scaffold_72:56894..57890+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10846 ID=mRNA_10846|Name=jgi.p|Nanoce1779_2|613314|organism=Nannochloropsis oceanica|type=mRNA|length=997bp|location=Sequence derived from alignment at scaffold_72:56894..57890+ (Nannochloropsis oceanica)
AGGCTATACGCCCGGGCCAATCAACGACTTCAATCAATAAATATTGCTGT
CAACATTGTCGATATGAAAGGTGAAGTGTCCTTCAATGGATGGTGGCGGC
GAATGCGCTGCAGCCACTTCATCCGAGTTACTCTCACAAACATACCCCCC
AACCACCATCAGCTGACACTCTGCTGACACTCTGCATCCACACATGTACA
TGTAATTACACGCACCATATGAACGCGCCTGAGTACGAATGTACACCTGT
ATGCACGCATCTATGCACTCCGCACAAGCACCAGCAGCTGCAGCGGCTGC
CACCATCAACAGCAGCTGCAGCAGTACAGAAGTGGCATCTGTGAAGGAAG
CGGAAACAGCATTGGTAGTAGTGGTTTCAGCAGTTGTAATGGCTGCAGCA
GCACAGGCAACAGCTATTGTAGTGGTAGCAGTAGCAGCAGCAGGAGCCAT
AGCAATGGCGACACAAGCCCCACAAGCACCGCCACAACCACAACGCACCG
CGTCGCCACCGCCACCACTACCACTACCACTACCACCAGGTCCATCACAA
CCAGCGCAGAAGGCAGGGAGTGGTGGTATTGCAGCAGCAACTATGGCTAT
ACCAACGGCACTTCCGACCAATCAACAACAACCACTAACACGGGCCACCG
TCGTTGCCACCGAGTCTACAGCTACTACCCGAAGCAAGTGCCGCTTTCCC
AAAAAAGTGAGGAGCAGGCCTACTTTCTCCGGCAGTGCCCGCCAATCATC
AGCGTCCAGTCTCAGAAACCGTTCGGCACCAAAAAATATAATATGTGCTG
TGCCTTGATCGACTAAATATGGGGTATGTCCATCTTCTTCCTGCCCATTC
TAGGAAAGAAGGTCTTGATCTCCCCCGTCGCTTTAGGTGGAGGGAGGAAT
GAGCTGGCCCATGTCCATGCGTATATTTGAATGACAGAGGAGGAACGTAA
AGCAACTGAGAACATTAAAAGTAAAGAATTGTAATGATGGGCTTGCC

Coding sequence (CDS) from alignment at scaffold_72:56894..57890+

>mRNA_10846 ID=mRNA_10846|Name=jgi.p|Nanoce1779_2|613314|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_72:56894..57890+ (Nannochloropsis oceanica)
ATGTACACCTGTATGCACGCATCTATGCACTCCGCACAAGCACCAGCAGC
TGCAGCGGCTGCCACCATCAACAGCAGCTGCAGCAGTACAGAAGTGGCAT
CTGTGAAGGAAGCGGAAACAGCATTGGTAGTAGTGGTTTCAGCAGTTGTA
ATGGCTGCAGCAGCACAGGCAACAGCTATTGTAGTGGTAGCAGTAGCAGC
AGCAGGAGCCATAGCAATGGCGACACAAGCCCCACAAGCACCGCCACAAC
CACAACGCACCGCGTCGCCACCGCCACCACTACCACTACCACTACCACCA
GGTCCATCACAACCAGCGCAGAAGGCAGGGAGTGGTGGTATTGCAGCAGC
AACTATGGCTATACCAACGGCACTTCCGACCAATCAACAACAACCACTAA
CACGGGCCACCGTCGTTGCCACCGAGTCTACAGCTACTACCCGAAGCAAG
TGCCGCTTTCCCAAAAAAGTGAGGAGCAGGCCTACTTTCTCCGGCAGTGC
CCGCCAATCATCAGCGTCCAGTCTCAGAAACCGTTCGGCACCAAAAAATA
TAATATGTGCTGTGCCTTGA

Synonyms

Publications