jgi.p|Nanoce1779_2|643615, mRNA_10842 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|643615
Unique NamemRNA_10842
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length321
Alignment locationscaffold_72:49069..50000 -

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Properties
Property NameValue
TranscriptId643701
TrackFilteredModels2
ProteinId643615
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_72supercontigscaffold_72:49069..50000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643615gene_10842Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643615mRNA_10842-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10842CDS_10842Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10842 ID=mRNA_10842|Name=jgi.p|Nanoce1779_2|643615|organism=Nannochloropsis oceanica|type=mRNA|length=321bp
ATGTGGCTTTTCATTGCCACTGCCTCGCGCCGTCGCTTGTTGATGATGGG
CCTCGCGCAAGAACTTGGGAGCCAGGAACGACCTGATTGCAACGCAATGC
GGGAGAAAAACGATAAAATTTTTGACATTAATAAGAACATGCAGACCAAG
GTACAGGAGGGTAAGGGAGCGCAGGAGCGCTATAAAGAGCTACTGGGCGG
AGGAGAAGAAGGGGGGGAGTGGGAGTGCGAGGGTCAGCAGAAATTCGATT
GGGAGGAGGAGGTAGGGGAGAAGAGGAAGAAGGATAAGGGTAACAGTATC
ACGGGCGCGCCGGGAAATTAG
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protein sequence of jgi.p|Nanoce1779_2|643615

>mRNA_10842-protein ID=mRNA_10842-protein|Name=jgi.p|Nanoce1779_2|643615|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MWLFIATASRRRLLMMGLAQELGSQERPDCNAMREKNDKIFDINKNMQTK
VQEGKGAQERYKELLGGGEEGGEWECEGQQKFDWEEEVGEKRKKDKGNSI
TGAPGN*
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mRNA from alignment at scaffold_72:49069..50000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10842 ID=mRNA_10842|Name=jgi.p|Nanoce1779_2|643615|organism=Nannochloropsis oceanica|type=mRNA|length=932bp|location=Sequence derived from alignment at scaffold_72:49069..50000- (Nannochloropsis oceanica)
ATGTGGCTTTTCATTGCCACTGCCTCGCGGTACTCAAGAGTCAGGAGTGT
ACAATGAGACACCGTGCAAACATTGTCAGAGGCAAGAGGGGCTAGCTAAT
TTGTAATCTATAGGAGGATATCGCTAAGTTCTTGTCTGTCGTAGCTATCA
CGGCACCGGCACGTAAATCCACTGACCTTCTCTCCCTTTTTCCTTGTAAC
CGGTTTGGACCGCGACGGCAGCTTCTTTGCCGCCGTGTTGATGGGATGCC
CATCCCTGGAGTATGTAGGGGCACCAGTTTTCTAATTGTAGGAGGCTGGT
TAAACTTAAAGGATTTTGAATTCCCTCCTCGCCCTCCCCTTTTCGAAGAC
CAGAGATGCCGCTCACGGCGTCGTGTACTTTTGAAAGGAATGCACACACT
ACCACTTCTCCTCTTGTCGTCCCGATGTCTACCCCTTTCTTAACCGCAAC
CCTACCCCCTTTACTTCCAACGACAGGAACAACATTTTCCTACACATATG
CCTTCCCTTTCCCGCCTCGCTGCCCTCGCCGTCACCACCACCAACAAAGT
CCGCCTCCCTCTTCTCCTCTTCCGTCGTGCCCGTTGCCTTCTCTCTATCT
CTTCTCCTTTCTTCCTTCCTCCTTTACTTTCTGGTAATAGCCGTCGCTTG
TTGATGATGGGCCTCGCGCAAGAACTTGGGAGCCAGGAACGACCTGATTG
CAACGCAATGCGGGAGAAAAACGATAAAATTTTTGACATTAATAAGAACA
TGCAGACCAAGGTACAGGAGGGTAAGGGAGCGCAGGAGCGCTATAAAGAG
CTACTGGGCGGAGGAGAAGAAGGGGGGGAGTGGGAGTGCGAGGGTCAGCA
GAAATTCGATTGGGAGGAGGAGGTAGGGGAGAAGAGGAAGAAGGATAAGG
GTAACAGTATCACGGGCGCGCCGGGAAATTAG
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Coding sequence (CDS) from alignment at scaffold_72:49069..50000-

>mRNA_10842 ID=mRNA_10842|Name=jgi.p|Nanoce1779_2|643615|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_72:49069..50000- (Nannochloropsis oceanica)
CCGTCGCTTGTTGATGATGGGCCTCGCGCAAGAACTTGGGAGCCAGGAAC
GACCTGATTGCAACGCAATGCGGGAGAAAAACGATAAAATTTTTGACATT
AATAAGAACATGCAGACCAAGGTACAGGAGGGTAAGGGAGCGCAGGAGCG
CTATAAAGAGCTACTGGGCGGAGGAGAAGAAGGGGGGGAGTGGGAGTGCG
AGGGTCAGCAGAAATTCGATTGGGAGGAGGAGGTAGGGGAGAAGAGGAAG
AAGGATAAGGGTAACAGTATCACGGGCGCGCCGGGAAATTAGATGTGGCT
TTTCATTGCCACTGCCTCGCGCCGTCGCTTGTTGATGATGGGCCTCGCGC
AAGAACTTGGGAGCCAGGAACGACCTGATTGCAACGCAATGCGGGAGAAA
AACGATAAAATTTTTGACATTAATAAGAACATGCAGACCAAGGTACAGGA
GGGTAAGGGAGCGCAGGAGCGCTATAAAGAGCTACTGGGCGGAGGAGAAG
AAGGGGGGGAGTGGGAGTGCGAGGGTCAGCAGAAATTCGATTGGGAGGAG
GAGGTAGGGGAGAAGAGGAAGAAGGATAAGGGTAACAGTATCACGGGCGC
GCCGGGAAATTAGATGTGGCTTTTCATTGCCACTGCCTCGCG
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Synonyms
Publications