jgi.p|Nanoce1779_2|405915, mRNA_10830 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|405915
Unique Name	mRNA_10830
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1852
Alignment location	scaffold_72:9600..11451 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	406001
Track	FilteredModels2
ProteinId	405915

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_72	supercontig	scaffold_72:9600..11451 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|405915	gene_10830	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|405915	mRNA_10830-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10830	CDS_10830	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_72:9600..11451-
coding sequence from alignment at scaffold_72:9600..11451-

mRNA sequence

>mRNA_10830 ID=mRNA_10830|Name=jgi.p|Nanoce1779_2|405915|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp
ATGACAACGTCTTTCCAAAAGGCAGGAGGTTGTACAACACGGCGGCTTGG
CATGTTCTTTGCCAAGTTTTTTTTTCGTAAACCTGATTCAGCATTTTGCT
TGTGCAAAGTTGCATGTAAATTAAAAGATTTTTTGGAATCGTGGTTCTCC
TCACCTCCTCCTGTATAAAAGTGCAAGGCGGTCTTACTTCTAACTTCCCT
CATTACATACAGGATCGACACAACTGCAAACAAAGCGTTGTGTTATCAGC
ATCTTTTCTCTGTTCCCCTCGCCCACCACTCTGAACAGGCGCATCAAAGA
TCCGGCAACTCTGTCAGCAAGCGGCCAGTCTCATAGCCCACTTCATGAAG
ATGTTCCTCCCCCTAGGCGCTCTCGCAGAGGATGATGTGGGCGACCTGCA
AGACTTTCTCAATACCTACCACTGCGCCGCCAAGTACTTCATGGGCTTCG
ATGGGATGACCCTCCTCCATTATGCCGCGCAACAAGGCAGTGGAAAAATC
ACTGCCTGGCTCGTTCATCCTCATCGAGGCCTTGACTTGGACGCCCGCAA
CATCCAAGGACGCACCGCTCTCTTTATTGCTGCTTCTACCGGTGGACCAG
GAAGCGCTAGGGTCGTAGAGATTCTGTTGAAAGCAGGAGCAGATCCCTCC
ATCCCTACTTTGATTGGGAGTACCGCTCTGATGGTGGCAAGGAGCGCAGA
AGTCATGAAGTTACTATTGCAGTATCCGGAGAAGAAAGAAGAGGATGAGA
ATGATGAGGAAGTAGGGATGACGGAGGTAACGGAGAAATCAAAAAAACGA
GGAGAGAGAGGAGGGAAACAATTGATTTTGTTAATTACTGGAGGAGGATT
AGATGGGGTAATGTATAAATATGAGAAAGACTGCGGTGAAGCAGGGACCA
ACGAAAAAGAAAGAGGGTTAGGGTCATGTCGGGCATATCGATGCGGAGGA
GAGAGTGACCGGGGAGGAGGAGGGCGAGAAGGCGCACCTGGGAGTGACAT
GAGATGGGAAAGAAAAGGGAAACGAATGAATTATGAGACACAAACACCAT
TGGACATAGATGCAATGGATGTCAACGGACACACCGCCCTGCACCACGCC
ATGTTCGGCGGCCGCAAGGCATACTGGGCTCTTCCCCTCCTCCTTGCCAA
TGGAGCCAACCCTTGGGTAAAAGACAGACGGGGAAGACTTTCTATCTACT
ACCTCTCGAGATATTCCCAGCCCGCTTTTATCGAGGCTTTGCTTTCTAAG
GCCATGACCTCCCCTCCGCCGCCGGTGTGGAGTTTGTGTAAAGCGCGGGC
GGCAGAGGAAGTGGAGGAGATGGAGGAGAGGGAGAAAGAGAGGGAGAAGG
GGTGTGCAGATGGACAGGAAGTGAGCAGGCCGTCAGGAGTGCGGGGAGTA
TGTAGGACAGATATACGTAAAATAATGGGAGTATCGGAAGCGGAACTTAT
AGAGGAGGAAGAAGCGGAGGAGGAAGGAGGGAAGGTGATGGCGCAGGAAG
AGAGGGGAAGGGGGGGGAAGGGTAGGGTGGCTTGTTCGGTGGAAGAAAGG
GCAAAAAAGGGAAACAAGATGCCTCGTATTGTGTGGACAGGAGGAAGTAT
GGAGGTCAAGGAGGCGAACGAGGTGGTGAAGGCTGTGGTTCGATTTGTGG
TAGGTGGGGAAGGAGGGAGGTTACGGAGGGAGGGAGGGAGAGCAGTATTG
CCCACGGAGTTATTTGCGGAGCTGGTAGAGATGATGGACTGGCAGGGACG
GGAAGGCTGATTGGGAGGAGAATGAGCGGGAAGTGGAGGAGTAGGCGGTG
GTGAATGATGACGAGAAGGAGGAAGGGTATCGATATATTTTACCAAGACG
AG

protein sequence of jgi.p|Nanoce1779_2|405915

>mRNA_10830-protein ID=mRNA_10830-protein|Name=jgi.p|Nanoce1779_2|405915|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MKMFLPLGALAEDDVGDLQDFLNTYHCAAKYFMGFDGMTLLHYAAQQGSG
KITAWLVHPHRGLDLDARNIQGRTALFIAASTGGPGSARVVEILLKAGAD
PSIPTLIGSTALMVARSAEVMKLLLQYPEKKEEDENDEEVGMTEVTEKSK
KRGERGGKQLILLITGGGLDGVMYKYEKDCGEAGTNEKERGLGSCRAYRC
GGESDRGGGGREGAPGSDMRWERKGKRMNYETQTPLDIDAMDVNGHTALH
HAMFGGRKAYWALPLLLANGANPWVKDRRGRLSIYYLSRYSQPAFIEALL
SKAMTSPPPPVWSLCKARAAEEVEEMEEREKEREKGCADGQEVSRPSGVR
GVCRTDIRKIMGVSEAELIEEEEAEEEGGKVMAQEERGRGGKGRVACSVE
ERAKKGNKMPRIVWTGGSMEVKEANEVVKAVVRFVVGGEGGRLRREGGRA
VLPTELFAELVEMMDWQGREG*

mRNA from alignment at scaffold_72:9600..11451-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10830 ID=mRNA_10830|Name=jgi.p|Nanoce1779_2|405915|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp|location=Sequence derived from alignment at scaffold_72:9600..11451- (Nannochloropsis oceanica)
ATGACAACGTCTTTCCAAAAGGCAGGAGGTTGTACAACACGGCGGCTTGG
CATGTTCTTTGCCAAGTTTTTTTTTCGTAAACCTGATTCAGCATTTTGCT
TGTGCAAAGTTGCATGTAAATTAAAAGATTTTTTGGAATCGTGGTTCTCC
TCACCTCCTCCTGTATAAAAGTGCAAGGCGGTCTTACTTCTAACTTCCCT
CATTACATACAGGATCGACACAACTGCAAACAAAGCGTTGTGTTATCAGC
ATCTTTTCTCTGTTCCCCTCGCCCACCACTCTGAACAGGCGCATCAAAGA
TCCGGCAACTCTGTCAGCAAGCGGCCAGTCTCATAGCCCACTTCATGAAG
ATGTTCCTCCCCCTAGGCGCTCTCGCAGAGGATGATGTGGGCGACCTGCA
AGACTTTCTCAATACCTACCACTGCGCCGCCAAGTACTTCATGGGCTTCG
ATGGGATGACCCTCCTCCATTATGCCGCGCAACAAGGCAGTGGAAAAATC
ACTGCCTGGCTCGTTCATCCTCATCGAGGCCTTGACTTGGACGCCCGCAA
CATCCAAGGACGCACCGCTCTCTTTATTGCTGCTTCTACCGGTGGACCAG
GAAGCGCTAGGGTCGTAGAGATTCTGTTGAAAGCAGGAGCAGATCCCTCC
ATCCCTACTTTGATTGGGAGTACCGCTCTGATGGTGGCAAGGAGCGCAGA
AGTCATGAAGTTACTATTGCAGTATCCGGAGAAGAAAGAAGAGGATGAGA
ATGATGAGGAAGTAGGGATGACGGAGGTAACGGAGAAATCAAAAAAACGA
GGAGAGAGAGGAGGGAAACAATTGATTTTGTTAATTACTGGAGGAGGATT
AGATGGGGTAATGTATAAATATGAGAAAGACTGCGGTGAAGCAGGGACCA
ACGAAAAAGAAAGAGGGTTAGGGTCATGTCGGGCATATCGATGCGGAGGA
GAGAGTGACCGGGGAGGAGGAGGGCGAGAAGGCGCACCTGGGAGTGACAT
GAGATGGGAAAGAAAAGGGAAACGAATGAATTATGAGACACAAACACCAT
TGGACATAGATGCAATGGATGTCAACGGACACACCGCCCTGCACCACGCC
ATGTTCGGCGGCCGCAAGGCATACTGGGCTCTTCCCCTCCTCCTTGCCAA
TGGAGCCAACCCTTGGGTAAAAGACAGACGGGGAAGACTTTCTATCTACT
ACCTCTCGAGATATTCCCAGCCCGCTTTTATCGAGGCTTTGCTTTCTAAG
GCCATGACCTCCCCTCCGCCGCCGGTGTGGAGTTTGTGTAAAGCGCGGGC
GGCAGAGGAAGTGGAGGAGATGGAGGAGAGGGAGAAAGAGAGGGAGAAGG
GGTGTGCAGATGGACAGGAAGTGAGCAGGCCGTCAGGAGTGCGGGGAGTA
TGTAGGACAGATATACGTAAAATAATGGGAGTATCGGAAGCGGAACTTAT
AGAGGAGGAAGAAGCGGAGGAGGAAGGAGGGAAGGTGATGGCGCAGGAAG
AGAGGGGAAGGGGGGGGAAGGGTAGGGTGGCTTGTTCGGTGGAAGAAAGG
GCAAAAAAGGGAAACAAGATGCCTCGTATTGTGTGGACAGGAGGAAGTAT
GGAGGTCAAGGAGGCGAACGAGGTGGTGAAGGCTGTGGTTCGATTTGTGG
TAGGTGGGGAAGGAGGGAGGTTACGGAGGGAGGGAGGGAGAGCAGTATTG
CCCACGGAGTTATTTGCGGAGCTGGTAGAGATGATGGACTGGCAGGGACG
GGAAGGCTGATTGGGAGGAGAATGAGCGGGAAGTGGAGGAGTAGGCGGTG
GTGAATGATGACGAGAAGGAGGAAGGGTATCGATATATTTTACCAAGACG
AG

Coding sequence (CDS) from alignment at scaffold_72:9600..11451-

>mRNA_10830 ID=mRNA_10830|Name=jgi.p|Nanoce1779_2|405915|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_72:9600..11451- (Nannochloropsis oceanica)
ATGAAGATGTTCCTCCCCCTAGGCGCTCTCGCAGAGGATGATGTGGGCGA
CCTGCAAGACTTTCTCAATACCTACCACTGCGCCGCCAAGTACTTCATGG
GCTTCGATGGGATGACCCTCCTCCATTATGCCGCGCAACAAGGCAGTGGA
AAAATCACTGCCTGGCTCGTTCATCCTCATCGAGGCCTTGACTTGGACGC
CCGCAACATCCAAGGACGCACCGCTCTCTTTATTGCTGCTTCTACCGGTG
GACCAGGAAGCGCTAGGGTCGTAGAGATTCTGTTGAAAGCAGGAGCAGAT
CCCTCCATCCCTACTTTGATTGGGAGTACCGCTCTGATGGTGGCAAGGAG
CGCAGAAGTCATGAAGTTACTATTGCAGTATCCGGAGAAGAAAGAAGAGG
ATGAGAATGATGAGGAAGTAGGGATGACGGAGGTAACGGAGAAATCAAAA
AAACGAGGAGAGAGAGGAGGGAAACAATTGATTTTGTTAATTACTGGAGG
AGGATTAGATGGGGTAATGTATAAATATGAGAAAGACTGCGGTGAAGCAG
GGACCAACGAAAAAGAAAGAGGGTTAGGGTCATGTCGGGCATATCGATGC
GGAGGAGAGAGTGACCGGGGAGGAGGAGGGCGAGAAGGCGCACCTGGGAG
TGACATGAGATGGGAAAGAAAAGGGAAACGAATGAATTATGAGACACAAA
CACCATTGGACATAGATGCAATGGATGTCAACGGACACACCGCCCTGCAC
CACGCCATGTTCGGCGGCCGCAAGGCATACTGGGCTCTTCCCCTCCTCCT
TGCCAATGGAGCCAACCCTTGGGTAAAAGACAGACGGGGAAGACTTTCTA
TCTACTACCTCTCGAGATATTCCCAGCCCGCTTTTATCGAGGCTTTGCTT
TCTAAGGCCATGACCTCCCCTCCGCCGCCGGTGTGGAGTTTGTGTAAAGC
GCGGGCGGCAGAGGAAGTGGAGGAGATGGAGGAGAGGGAGAAAGAGAGGG
AGAAGGGGTGTGCAGATGGACAGGAAGTGAGCAGGCCGTCAGGAGTGCGG
GGAGTATGTAGGACAGATATACGTAAAATAATGGGAGTATCGGAAGCGGA
ACTTATAGAGGAGGAAGAAGCGGAGGAGGAAGGAGGGAAGGTGATGGCGC
AGGAAGAGAGGGGAAGGGGGGGGAAGGGTAGGGTGGCTTGTTCGGTGGAA
GAAAGGGCAAAAAAGGGAAACAAGATGCCTCGTATTGTGTGGACAGGAGG
AAGTATGGAGGTCAAGGAGGCGAACGAGGTGGTGAAGGCTGTGGTTCGAT
TTGTGGTAGGTGGGGAAGGAGGGAGGTTACGGAGGGAGGGAGGGAGAGCA
GTATTGCCCACGGAGTTATTTGCGGAGCTGGTAGAGATGATGGACTGGCA
GGGACGGGAAGGCTGA

Synonyms

Publications