jgi.p|Nanoce1779_2|405499, mRNA_10832 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|405499
Unique NamemRNA_10832
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length668
Alignment locationscaffold_72:12720..13387 -

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Properties
Property NameValue
TranscriptId405585
TrackFilteredModels2
ProteinId405499
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_72supercontigscaffold_72:12720..13387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|405499gene_10832Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|405499mRNA_10832-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10832CDS_10832Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10832 ID=mRNA_10832|Name=jgi.p|Nanoce1779_2|405499|organism=Nannochloropsis oceanica|type=mRNA|length=668bp
AACGCACAAATTTTCCTCGTCTTCCCTGCTGCTATTGTTGACTAGCACTT
ACCGACCCCACTATTCTTCCACCCGTCCTCTCTCTCACACACTCTCTCTC
TCTGTATATGTATATATATTTCTTTCACATACACATTTACATAAAAAATA
GACAGGATGTCTCTTTTAGTCGACACGTGCCCGACATCTTTTACATTCTC
TCACTTTATTCACTCTCCATCTTCTTCCACTTCCCGCAAATTCTTAATTC
AATTTATCATCTTTCATACACACACTCACCCACACACTCCCCTATGCATT
CTCACACACTGTCTCTCACCAGCTGCAATAAGATTCTCTCGCTCTGCAGA
GAAGACGGCTTGCTGTCGCACGCTCCCTCTTCTTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCTACATTCTCTCCCTTTTCGTTTACTTTTCCATTCTTT
CCCTATCCCTCTATCCCCATTGCCTGCATTCCCCACCCCTAAGAAACTCC
TCCATTCCATGATGGAAAGCGCTTACTTACAAGTGATCCTGTTCACACAC
CTGTACACCTAACCTTAACCCTCACACTTTCCTATTCATGCTAAGCACAC
AATGCACACACTCTCTTTACACACATGCATACCTTAACTGTGTAAGGTAA
AGCCACCACATGCCGCGC
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protein sequence of jgi.p|Nanoce1779_2|405499

>mRNA_10832-protein ID=mRNA_10832-protein|Name=jgi.p|Nanoce1779_2|405499|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MYIYFFHIHIYIKNRQDVSFSRHVPDIFYILSLYSLSIFFHFPQILNSIY
HLSYTHSPTHSPMHSHTLSLTSCNKILSLCREDGLLSHAPSSSLPPSLPP
SLYILSLFVYFSILSLSLYPHCLHSPPLRNSSIP*
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mRNA from alignment at scaffold_72:12720..13387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10832 ID=mRNA_10832|Name=jgi.p|Nanoce1779_2|405499|organism=Nannochloropsis oceanica|type=mRNA|length=668bp|location=Sequence derived from alignment at scaffold_72:12720..13387- (Nannochloropsis oceanica)
AACGCACAAATTTTCCTCGTCTTCCCTGCTGCTATTGTTGACTAGCACTT
ACCGACCCCACTATTCTTCCACCCGTCCTCTCTCTCACACACTCTCTCTC
TCTGTATATGTATATATATTTCTTTCACATACACATTTACATAAAAAATA
GACAGGATGTCTCTTTTAGTCGACACGTGCCCGACATCTTTTACATTCTC
TCACTTTATTCACTCTCCATCTTCTTCCACTTCCCGCAAATTCTTAATTC
AATTTATCATCTTTCATACACACACTCACCCACACACTCCCCTATGCATT
CTCACACACTGTCTCTCACCAGCTGCAATAAGATTCTCTCGCTCTGCAGA
GAAGACGGCTTGCTGTCGCACGCTCCCTCTTCTTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCTACATTCTCTCCCTTTTCGTTTACTTTTCCATTCTTT
CCCTATCCCTCTATCCCCATTGCCTGCATTCCCCACCCCTAAGAAACTCC
TCCATTCCATGATGGAAAGCGCTTACTTACAAGTGATCCTGTTCACACAC
CTGTACACCTAACCTTAACCCTCACACTTTCCTATTCATGCTAAGCACAC
AATGCACACACTCTCTTTACACACATGCATACCTTAACTGTGTAAGGTAA
AGCCACCACATGCCGCGC
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Coding sequence (CDS) from alignment at scaffold_72:12720..13387-

>mRNA_10832 ID=mRNA_10832|Name=jgi.p|Nanoce1779_2|405499|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_72:12720..13387- (Nannochloropsis oceanica)
ATGTATATATATTTCTTTCACATACACATTTACATAAAAAATAGACAGGA
TGTCTCTTTTAGTCGACACGTGCCCGACATCTTTTACATTCTCTCACTTT
ATTCACTCTCCATCTTCTTCCACTTCCCGCAAATTCTTAATTCAATTTAT
CATCTTTCATACACACACTCACCCACACACTCCCCTATGCATTCTCACAC
ACTGTCTCTCACCAGCTGCAATAAGATTCTCTCGCTCTGCAGAGAAGACG
GCTTGCTGTCGCACGCTCCCTCTTCTTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCTACATTCTCTCCCTTTTCGTTTACTTTTCCATTCTTTCCCTATC
CCTCTATCCCCATTGCCTGCATTCCCCACCCCTAAGAAACTCCTCCATTC
CATGA
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Synonyms
Publications