jgi.p|Nanoce1779_2|406969, mRNA_10827 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|406969
Unique NamemRNA_10827
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1007
Alignment locationscaffold_72:2724..4102 +

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Properties
Property NameValue
TranscriptId407055
TrackFilteredModels2
ProteinId406969
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_72supercontigscaffold_72:2724..4102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|406969gene_10827Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|406969mRNA_10827-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10827CDS_10827Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10827 ID=mRNA_10827|Name=jgi.p|Nanoce1779_2|406969|organism=Nannochloropsis oceanica|type=mRNA|length=1007bp
CCTTGCCAACCCTCCCTCGTCGCCTTCCTATTGTCTTCCCCGACTCACAC
TTGATACCAGGACAACACAGCGTCTCTGGGGCATAAATCCCGAGGAGATG
ACTTGCTTGCCGCGGGCCGCATGGGAGGCCAAGGCCCGAGAGCACAAGTC
AAGGATGCTGGCTCTGATGGGAGGGAGCACCAGGCATGACCACGGCAACC
GGTAATGAGATAGTAGGGAGTTGTGGAGGAGGGAGGGAGGAACAGAATGG
AACGTTTCCTTGCACTGATGTCGATACCGCCATTTACTGTAAGCGTACAC
TCATACATCTCCCTCTTGTTTCCCTATCGTCCTCACTACTGGTTGGTACA
GATATTCAACTTCTTATTTGAGTACTACCACTTTAAGTCTCAAGCCCTAC
TGGACTTTTCGGTGGGAATTGAGCCTGTAATCCTCTCGCTGGATGAGGAA
AATGACCCAAAGGGAGGGAAATTCGCGAAAGAAGCAGCTTCTGCTGCAGC
AGAAAGAGAAGAGGAAGGGGTAGACGAGCTCTTGCCAAGCTTCCTAGCGA
GCAAGACCGTAATGGTTCGGACGTGTGCAGAGGAGGGAGGGAGGGAGGAA
GGAACTCGAGGACTGGTATGGCTGCCGTTACCGGGGGTGGCGTCATTTAC
CGACAAGCATTTAGAGGCTTTGCGCTTCGGCTTGTGTGTGATGCGCGCGA
CGACCACACGGCCGCCCATCTTCTTTTGTCATGGCGCGCACGAGTGGGCG
ATGCTCTATCACCCGCCCTCTTCTACCCACCCACCGCCCCATAAATACCA
AGATGCCTTGCCTTTGCGCATACCCCAACAAGTCTTGAATCGCTTCGTGG
AAGAGCGCCCGATGCGCTGCACGCATTTTGACGCGTTTCGGTTTTTCACC
CCTGACGCCCGTCCCTGAATATCTTTCACGACGACTTGAGTCAGGGTCGA
CTGCTTGGGCAAGCGTTACATGAACAGCCGGGATGTTTACACGCAAATAT
GGATTTG
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protein sequence of jgi.p|Nanoce1779_2|406969

>mRNA_10827-protein ID=mRNA_10827-protein|Name=jgi.p|Nanoce1779_2|406969|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MERFLALMSIPPFTVSVHSYISLLFPYRPHYWLVQIFNFLFEYYHFKSQA
LLDFSVGIEPVILSLDEENDPKGGKFAKEAASAAAEREEEGVDELLPSFL
ASKTVMVRTCAEEGGREEGTRGLVWLPLPGVASFTDKHLEALRFGLCVMR
ATTTRPPIFFCHGAHEWAMLYHPPSSTHPPPHKYQDALPLRIPQQVLNRF
VEERPMRCTHFDAFRFFTPDARP*
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mRNA from alignment at scaffold_72:2724..4102+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10827 ID=mRNA_10827|Name=jgi.p|Nanoce1779_2|406969|organism=Nannochloropsis oceanica|type=mRNA|length=1379bp|location=Sequence derived from alignment at scaffold_72:2724..4102+ (Nannochloropsis oceanica)
CCTTGCCAACCCTCCCTCGTCGCCTTCCTATTGTCTTCCCCGACTCACAC
TTGATACCAGGACAACACAGCGTCTCTGGGGCATAAATCCCGAGGAGATG
ACTTGCTTGCCGCGGGCCGCATGGGAGGCCAAGGCCCGAGAGCACAAGTC
AAGGATGCTGGCTCTGATGGGAGGGAGCACCAGGCATGACCACGGCAACC
GGTAATGAGATAGTAGGGAGTTGTGGAGGAGGGAGGGAGGAACAGAATGG
AACGTTTCCTTGCACTGATGTCGATACCGCCATTTACTGTAAGCGTACAC
TCATACATCTCCCTCTTGTTTCCCTATCGTCCTCACTACTGGTTGGTACA
GATATTCAACTTCTTATTTGAGGTAAAGGCAGCAAATACACAGAATGGAT
GGAGAGGGCGAAGGAATGAAGAGCTATGTAGAGTGGTGCATGCCAAATAC
TCACAAATGATTCTCACTCTGACATCCCTCTCTCTCCCTGCCTCCCTCCC
TCCCTCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCTGTAGTACTACCACT
TTAAGTCTCAAGCCCTACTGGACTTTTCGGTGGGAATTGAGCCTGTAATC
CTCTCGCTGGATGAGGAAAATGACCCAAAGGGAGGGAAATTCGCGAAAGA
AGCAGCTTCTGCTGCAGCAGAAAGAGAAGAGGAAGGGGTAGACGAGCTCT
TGCCAAGCTTCCTAGCGAGCAAGACCGTAATGGTTCGGACGTGTGCAGAG
GAGGGAGGGAGGGAGGAAGGAACTCGAGGACTGGTATGGCTGCCGTTACC
GGGGGTGGCGTCATTTACCGACAAGCATTTAGAGGCTTTGCGCTTCGGCT
TGTGTGTGATGCGCGCGACGACCACACGGCCGCCCATCTTCTTTTGTCAT
GGCGCGCACGAGGTAAGGGCATCCATCCACGGGTTTGCTCCAAGGCAGGA
GATTCAGAGGGAGATGTTCAAATGACTTGTCAGCGTTTGTCCTTGTTTTG
CTCGCCTGTCTCTGTATCCGAGTGGACGTGAGATTGAAATTGACGGTTTT
TCAAATATCGGGGTCTCACGTCCCTTCCCCACCCTCCTCCCTCTTCCTTC
CCTCCGCAACCCACAGTGGGCGATGCTCTATCACCCGCCCTCTTCTACCC
ACCCACCGCCCCATAAATACCAAGATGCCTTGCCTTTGCGCATACCCCAA
CAAGTCTTGAATCGCTTCGTGGAAGAGCGCCCGATGCGCTGCACGCATTT
TGACGCGTTTCGGTTTTTCACCCCTGACGCCCGTCCCTGAATATCTTTCA
CGACGACTTGAGTCAGGGTCGACTGCTTGGGCAAGCGTTACATGAACAGC
CGGGATGTTTACACGCAAATATGGATTTG
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Coding sequence (CDS) from alignment at scaffold_72:2724..4102+

>mRNA_10827 ID=mRNA_10827|Name=jgi.p|Nanoce1779_2|406969|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_72:2724..4102+ (Nannochloropsis oceanica)
ATGGAACGTTTCCTTGCACTGATGTCGATACCGCCATTTACTGTAAGCGT
ACACTCATACATCTCCCTCTTGTTTCCCTATCGTCCTCACTACTGGTTGG
TACAGATATTCAACTTCTTATTTGAGTACTACCACTTTAAGTCTCAAGCC
CTACTGGACTTTTCGGTGGGAATTGAGCCTGTAATCCTCTCGCTGGATGA
GGAAAATGACCCAAAGGGAGGGAAATTCGCGAAAGAAGCAGCTTCTGCTG
CAGCAGAAAGAGAAGAGGAAGGGGTAGACGAGCTCTTGCCAAGCTTCCTA
GCGAGCAAGACCGTAATGGTTCGGACGTGTGCAGAGGAGGGAGGGAGGGA
GGAAGGAACTCGAGGACTGGTATGGCTGCCGTTACCGGGGGTGGCGTCAT
TTACCGACAAGCATTTAGAGGCTTTGCGCTTCGGCTTGTGTGTGATGCGC
GCGACGACCACACGGCCGCCCATCTTCTTTTGTCATGGCGCGCACGAGTG
GGCGATGCTCTATCACCCGCCCTCTTCTACCCACCCACCGCCCCATAAAT
ACCAAGATGCCTTGCCTTTGCGCATACCCCAACAAGTCTTGAATCGCTTC
GTGGAAGAGCGCCCGATGCGCTGCACGCATTTTGACGCGTTTCGGTTTTT
CACCCCTGACGCCCGTCCCTGAATGGAACGTTTCCTTGCACTGATGTCGA
TACCGCCATTTACTGTAAGCGTACACTCATACATCTCCCTCTTGTTTCCC
TATCGTCCTCACTACTGGTTGGTACAGATATTCAACTTCTTATTTGAGTA
CTACCACTTTAAGTCTCAAGCCCTACTGGACTTTTCGGTGGGAATTGAGC
CTGTAATCCTCTCGCTGGATGAGGAAAATGACCCAAAGGGAGGGAAATTC
GCGAAAGAAGCAGCTTCTGCTGCAGCAGAAAGAGAAGAGGAAGGGGTAGA
CGAGCTCTTGCCAAGCTTCCTAGCGAGCAAGACCGTAATGGTTCGGACGT
GTGCAGAGGAGGGAGGGAGGGAGGAAGGAACTCGAGGACTGGTATGGCTG
CCGTTACCGGGGGTGGCGTCATTTACCGACAAGCATTTAGAGGCTTTGCG
CTTCGGCTTGTGTGTGATGCGCGCGACGACCACACGGCCGCCCATCTTCT
TTTGTCATGGCGCGCACGAGTGGGCGATGCTCTATCACCCGCCCTCTTCT
ACCCACCCACCGCCCCATAAATACCAAGATGCCTTGCCTTTGCGCATACC
CCAACAAGTCTTGAATCGCTTCGTGGAAGAGCGCCCGATGCGCTGCACGC
ATTTTGACGCGTTTCGGTTTTTCACCCCTGACGCCCGTCCCTGAATGGAA
CGTTTCCTTGCACTGATGTCGATACCGCCATTTACTGTAAGCGTACACTC
ATACATCTCCCTCTTGTTTCCCTATCGTCCTCACTACTGGTTGGTACAGA
TATTCAACTTCTTATTTGAGTACTACCACTTTAAGTCTCAAGCCCTACTG
GACTTTTCGGTGGGAATTGAGCCTGTAATCCTCTCGCTGGATGAGGAAAA
TGACCCAAAGGGAGGGAAATTCGCGAAAGAAGCAGCTTCTGCTGCAGCAG
AAAGAGAAGAGGAAGGGGTAGACGAGCTCTTGCCAAGCTTCCTAGCGAGC
AAGACCGTAATGGTTCGGACGTGTGCAGAGGAGGGAGGGAGGGAGGAAGG
AACTCGAGGACTGGTATGGCTGCCGTTACCGGGGGTGGCGTCATTTACCG
ACAAGCATTTAGAGGCTTTGCGCTTCGGCTTGTGTGTGATGCGCGCGACG
ACCACACGGCCGCCCATCTTCTTTTGTCATGGCGCGCACGAGTGGGCGAT
GCTCTATCACCCGCCCTCTTCTACCCACCCACCGCCCCATAAATACCAAG
ATGCCTTGCCTTTGCGCATACCCCAACAAGTCTTGAATCGCTTCGTGGAA
GAGCGCCCGATGCGCTGCACGCATTTTGACGCGTTTCGGTTTTTCACCCC
TGACGCCCGTCCCTGA
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Synonyms
Publications