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Properties
| Property Name | Value |
|---|
| TranscriptId | 405728 |
| Track | FilteredModels2 |
| ProteinId | 405642 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_72 | supercontig | scaffold_72:4998..7347 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10829 ID=mRNA_10829|Name=jgi.p|Nanoce1779_2|405642|organism=Nannochloropsis oceanica|type=mRNA|length=1159bp
GGAGGGAGGGAGGGAGGAAGGGAGGGAAGGAGGATGAGATTGTCTCGTGT
ACGGGCTCGTGCATTCTGAGCTATTTCTATTCACCGCCCTCCTTCCCTAC
GCACCCACCCCCACAGGCGGCAATACGGCCATCAATTGGACACAGCCGTC
CAACCTGGCCAGAACAACGGACGTCCTCGTCTACCTCGCGCAGAACCTCA
CAAAGCTGAACGCCTCCAAGGAGATGGAAGGCAGCATCGCTGGTCTCTGT
CTCCTCAACGAGCCGTGGACTACGGCCGTCGGTGGCCCCGTCCAACTCGA
CACCCTCAAATCCTGGCTGCAGACCACCACCGATGCCGTTCTCGCCACAG
GGTGGAAAGGCGACGTCTGGTTCCCTGACGGCTTTGCCCTAGACTGGGAC
GGCTGGCGCGATTTTCTCACGCCTCCCGAATACCCTCGGAATATATTCGC
CGATGCCCACATCTACATGATGTTTGACGACGCCGTGGCCGACCTTGATG
CGGCAGGCCAAGCACAGAATTTTTGCCGGGAGGACAATCACTACAGACAG
CAGCTCGAGCGCGCGGGCGGTGTGGGCAGTGGGGTGGTGGTGGGAGAGTA
CTCGATGGACTTCCGGAAGTGGCCGACGTCCTTCCCCTACAGCAACGAGA
CCCTCACGGGCCTCCAAGACTTGCTTCTGGTTCAGCAGCATCTCTATAAC
GTCATTGGTGACAAACGTGAGAACGCAGCTGTTGGCGGATTTTTCTGGTC
GTTCAAGTCCCTGGGCCGCGTCGATATCCAGACATTCGACCAGAGCGACC
TGGCCGTCGACAACTCCTTCAATAATTTACACTCCCCGTGGAGCTACCTC
TCCTTGCTCACCGACGGCGTGGCCAGCCCGAATCTGGCCAAGGCCACGCC
ACCATGTTAAGGGCTGCAACCAAGGGAAGGAGGGGGGGAAGGAGGGGGCG
CCAGTCGTGAAGGTAATTTAGGACGTATGCGTCTGACGGCTGAAAGGAAT
ATTTGATGGGTCAGAACGAGAAGGATGGATGTATGGCCGTAACGCATGCT
ATTGGGGGGGCATATATTATATTATATATTACATATTACATCAAAGAAAA
CAGGGAAAGAGGGTGGGCGGGGGTCGAGACTTTGCATGTGTGAGAGTAGT
AATGGGATG back to topprotein sequence of jgi.p|Nanoce1779_2|405642 >mRNA_10829-protein ID=mRNA_10829-protein|Name=jgi.p|Nanoce1779_2|405642|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MEGSIAGLCLLNEPWTTAVGGPVQLDTLKSWLQTTTDAVLATGWKGDVWF
PDGFALDWDGWRDFLTPPEYPRNIFADAHIYMMFDDAVADLDAAGQAQNF
CREDNHYRQQLERAGGVGSGVVVGEYSMDFRKWPTSFPYSNETLTGLQDL
LLVQQHLYNVIGDKRENAAVGGFFWSFKSLGRVDIQTFDQSDLAVDNSFN
NLHSPWSYLSLLTDGVASPNLAKATPPC* back to topmRNA from alignment at scaffold_72:4998..7347- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10829 ID=mRNA_10829|Name=jgi.p|Nanoce1779_2|405642|organism=Nannochloropsis oceanica|type=mRNA|length=2350bp|location=Sequence derived from alignment at scaffold_72:4998..7347- (Nannochloropsis oceanica)
GGAGGGAGGGAGGGAGGAAGGGAGGGAAGGAGGATGAGATTGTCTCGTGT
ACGGGCTCGTGCATTCTGAGCTATTTCTATTCACCGCCCTCCTTCCCTAC
GCACCCACCCCCACAGGCGGCAATACGGCCATCAATTGGACACAGCCGTC
CAACCTGGCCAGAACAACGGACGTCCTCGTCTACCTCGCGCAGAACCTCA
CAAAGCTGAACGCCTCCAAGGAGATGGAAGGCAAGCAAGCCCTCCCTCCC
TCCCTCCCTCTTTCCCTCCCGCCCTCCCTAGCGCCCTGCCGTCTTCTCCT
CATGGCTCCCCCTCCCTCCCTCCTTCCCTCCTTCTCTCCCACAGGCAGCA
TCGCTGGTCTCTGTCTCCTCAACGAGCCGTGGACTACGGCCGTCGGTGGC
CCCGTCCAACTCGACACCCTCAAATCCTGGTAAGCCCCTCCCCCCCCTCC
CTTCTTCCCTCCCCCCCTTCCTCCTTCCCCCCCCCCCCCTTCCTCCTTCC
CTCTTCCCCTCCCTCCCGTGGGACTGGAAGAGCTCTGTCCTCCTTTCCCT
TTACTCATCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCTGCA
GACCACCACCGATGCCGTTCTCGCCACAGGGTGGAAAGGCGACGTCTGGT
TCCCTGACGGCTTTGCCCTAGACTGTAAGGAGGGAGGGAGGGGAGGAGGG
GAGAAAGGGAGGGGAGGTGGATGGACACTCTTTTCTCAATATAATGCTCT
CGTTTCACTCAGGTACCTTTCCCCCTCCCTCCTCCCTCCCTCCCCTCCTT
CCCTCCCTCCCTCCTCTTCTAGGGGACGGCTGGCGCGATTTTCTCACGCC
TCCCGAATACCCTCGGAATATATTCGCCGATGCCCACATCTACATGATGT
TTGACGACGCCGTGGCCGACCTTGATGGTATGCCCTCCCTCCCTCCCTCC
TGCACGCCTTCACTCCCTGTCATCCCCTTGCTGTGTTTTGGTTGATATTA
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTATCCCTCCT
CCGATCTACAACCAAAGGAAGTACGACAATCAGCAGCTTCCTCTTGTTCA
CTTCCCCGCTCAATCCTCCCCCTCCCTCCCTCCCTCAGCGGCAGGCCAAG
CACAGAATTTTTGCCGGGAGGACAATCACTACAGACAGCAGCTCGAGCGC
GCGGGCGGTGTGGGCAGTGGGGTGGTGGTGGGAGAGTACTCGATGGGTAG
GGAGGGAGGGAGGGAGGGAGGAACAGGCCCTGTGTATTCGTCCACGCCAT
TGCGTTTCCCACGCACCGTATCTCCTTTTACCCCTCCCTCCCTCCCTCCC
TCCCCCCCGCCCTCCCCCCCGCCCTCCCAGACTTCCGGAAGTGGCCGACG
TCCTTCCCCTACAGCAACGAGACCCTCACGGGCCTCCAAGACTTGCTTCT
GGTTCAGCAGCATGTGAGCCGTGGGGGGGGAAGGAGGAAGAGAGGGTGGG
AGGGTGGGGGGGTGGAACGTATGTGTATATGTTCTTTGTGCTTGTGTCTG
TGGGAACCTCCCTCCTTCCCTCCGTCCTCCCCTCCCTCCCTTTTCTTCAA
ATTGTATAGTCAACTGAAGGTTTCCGCATGCCACCACTTCTTAACTCCTC
CCTCCCTTCCTCTCTCTTTCCCGTCCTCCTTCCCTCCCTCAGCTCTATAA
CGTCATTGGTGACAAACGTGAGAACGCAGCTGTTGGCGGATTTTTCTGGT
CGTTCAAGGTACGAATGACTTTGAGACCTCTTCCTCCCTCCCTCCTTCTC
TCCCTCCCTCATGGTCCACTTCAGACGCTCCATTTCCCAGCAAAGCAGCT
CATCACGAGGAAAGCACCCCTCGAAATCACTGCCAACGGCCTTCTCTTCC
CTCCCTTTCTCCCTCCCTCCCACCCACCCTCGTTCCCTCCCTCCTCAGTC
CCTGGGCCGCGTCGATATCCAGACATTCGACCAGAGCGACCTGGCCGTCG
ACAACTCCTTCAATAATTTACACTCCCCGTGGAGCTACCTCTCCTTGCTC
ACCGACGGCGTGGCCAGCCCGAATCTGGCCAAGGCCACGCCACCATGTTA
AGGGCTGCAACCAAGGGAAGGAGGGGGGGAAGGAGGGGGCGCCAGTCGTG
AAGGTAATTTAGGACGTATGCGTCTGACGGCTGAAAGGAATATTTGATGG
GTCAGAACGAGAAGGATGGATGTATGGCCGTAACGCATGCTATTGGGGGG
GCATATATTATATTATATATTACATATTACATCAAAGAAAACAGGGAAAG
AGGGTGGGCGGGGGTCGAGACTTTGCATGTGTGAGAGTAGTAATGGGATG
back to topCoding sequence (CDS) from alignment at scaffold_72:4998..7347- >mRNA_10829 ID=mRNA_10829|Name=jgi.p|Nanoce1779_2|405642|organism=Nannochloropsis oceanica|type=CDS|length=5496bp|location=Sequence derived from alignment at scaffold_72:4998..7347- (Nannochloropsis oceanica)
TCCCTGGGCCGCGTCGATATCCAGACATTCGACCAGAGCGACCTGGCCGT
CGACAACTCCTTCAATAATTTACACTCCCCGTGGAGCTACCTCTCCTTGC
TCACCGACGGCGTGGCCAGCCCGAATCTGGCCAAGGCCACGCCACCATGT
TAACTCTATAACGTCATTGGTGACAAACGTGAGAACGCAGCTGTTGGCGG
ATTTTTCTGGTCGTTCAAGACTTCCGGAAGTGGCCGACGTCCTTCCCCTA
CAGCAACGAGACCCTCACGGGCCTCCAAGACTTGCTTCTGGTTCAGCAGC
ATCGGCAGGCCAAGCACAGAATTTTTGCCGGGAGGACAATCACTACAGAC
AGCAGCTCGAGCGCGCGGGCGGTGTGGGCAGTGGGGTGGTGGTGGGAGAG
TACTCGATGGGGGACGGCTGGCGCGATTTTCTCACGCCTCCCGAATACCC
TCGGAATATATTCGCCGATGCCCACATCTACATGATGTTTGACGACGCCG
TGGCCGACCTTGATGGCTGCAGACCACCACCGATGCCGTTCTCGCCACAG
GGTGGAAAGGCGACGTCTGGTTCCCTGACGGCTTTGCCCTAGACTGCAGC
ATCGCTGGTCTCTGTCTCCTCAACGAGCCGTGGACTACGGCCGTCGGTGG
CCCCGTCCAACTCGACACCCTCAAATCCTGATGGAAGTCCCTGGGCCGCG
TCGATATCCAGACATTCGACCAGAGCGACCTGGCCGTCGACAACTCCTTC
AATAATTTACACTCCCCGTGGAGCTACCTCTCCTTGCTCACCGACGGCGT
GGCCAGCCCGAATCTGGCCAAGGCCACGCCACCATGTTAACTCTATAACG
TCATTGGTGACAAACGTGAGAACGCAGCTGTTGGCGGATTTTTCTGGTCG
TTCAAGACTTCCGGAAGTGGCCGACGTCCTTCCCCTACAGCAACGAGACC
CTCACGGGCCTCCAAGACTTGCTTCTGGTTCAGCAGCATCGGCAGGCCAA
GCACAGAATTTTTGCCGGGAGGACAATCACTACAGACAGCAGCTCGAGCG
CGCGGGCGGTGTGGGCAGTGGGGTGGTGGTGGGAGAGTACTCGATGGGGG
ACGGCTGGCGCGATTTTCTCACGCCTCCCGAATACCCTCGGAATATATTC
GCCGATGCCCACATCTACATGATGTTTGACGACGCCGTGGCCGACCTTGA
TGGCTGCAGACCACCACCGATGCCGTTCTCGCCACAGGGTGGAAAGGCGA
CGTCTGGTTCCCTGACGGCTTTGCCCTAGACTGCAGCATCGCTGGTCTCT
GTCTCCTCAACGAGCCGTGGACTACGGCCGTCGGTGGCCCCGTCCAACTC
GACACCCTCAAATCCTGATGGAAGTCCCTGGGCCGCGTCGATATCCAGAC
ATTCGACCAGAGCGACCTGGCCGTCGACAACTCCTTCAATAATTTACACT
CCCCGTGGAGCTACCTCTCCTTGCTCACCGACGGCGTGGCCAGCCCGAAT
CTGGCCAAGGCCACGCCACCATGTTAACTCTATAACGTCATTGGTGACAA
ACGTGAGAACGCAGCTGTTGGCGGATTTTTCTGGTCGTTCAAGACTTCCG
GAAGTGGCCGACGTCCTTCCCCTACAGCAACGAGACCCTCACGGGCCTCC
AAGACTTGCTTCTGGTTCAGCAGCATCGGCAGGCCAAGCACAGAATTTTT
GCCGGGAGGACAATCACTACAGACAGCAGCTCGAGCGCGCGGGCGGTGTG
GGCAGTGGGGTGGTGGTGGGAGAGTACTCGATGGGGGACGGCTGGCGCGA
TTTTCTCACGCCTCCCGAATACCCTCGGAATATATTCGCCGATGCCCACA
TCTACATGATGTTTGACGACGCCGTGGCCGACCTTGATGGCTGCAGACCA
CCACCGATGCCGTTCTCGCCACAGGGTGGAAAGGCGACGTCTGGTTCCCT
GACGGCTTTGCCCTAGACTGCAGCATCGCTGGTCTCTGTCTCCTCAACGA
GCCGTGGACTACGGCCGTCGGTGGCCCCGTCCAACTCGACACCCTCAAAT
CCTGATGGAAGTCCCTGGGCCGCGTCGATATCCAGACATTCGACCAGAGC
GACCTGGCCGTCGACAACTCCTTCAATAATTTACACTCCCCGTGGAGCTA
CCTCTCCTTGCTCACCGACGGCGTGGCCAGCCCGAATCTGGCCAAGGCCA
CGCCACCATGTTAACTCTATAACGTCATTGGTGACAAACGTGAGAACGCA
GCTGTTGGCGGATTTTTCTGGTCGTTCAAGACTTCCGGAAGTGGCCGACG
TCCTTCCCCTACAGCAACGAGACCCTCACGGGCCTCCAAGACTTGCTTCT
GGTTCAGCAGCATCGGCAGGCCAAGCACAGAATTTTTGCCGGGAGGACAA
TCACTACAGACAGCAGCTCGAGCGCGCGGGCGGTGTGGGCAGTGGGGTGG
TGGTGGGAGAGTACTCGATGGGGGACGGCTGGCGCGATTTTCTCACGCCT
CCCGAATACCCTCGGAATATATTCGCCGATGCCCACATCTACATGATGTT
TGACGACGCCGTGGCCGACCTTGATGGCTGCAGACCACCACCGATGCCGT
TCTCGCCACAGGGTGGAAAGGCGACGTCTGGTTCCCTGACGGCTTTGCCC
TAGACTGCAGCATCGCTGGTCTCTGTCTCCTCAACGAGCCGTGGACTACG
GCCGTCGGTGGCCCCGTCCAACTCGACACCCTCAAATCCTGATGGAAGTC
CCTGGGCCGCGTCGATATCCAGACATTCGACCAGAGCGACCTGGCCGTCG
ACAACTCCTTCAATAATTTACACTCCCCGTGGAGCTACCTCTCCTTGCTC
ACCGACGGCGTGGCCAGCCCGAATCTGGCCAAGGCCACGCCACCATGTTA
ACTCTATAACGTCATTGGTGACAAACGTGAGAACGCAGCTGTTGGCGGAT
TTTTCTGGTCGTTCAAGACTTCCGGAAGTGGCCGACGTCCTTCCCCTACA
GCAACGAGACCCTCACGGGCCTCCAAGACTTGCTTCTGGTTCAGCAGCAT
CGGCAGGCCAAGCACAGAATTTTTGCCGGGAGGACAATCACTACAGACAG
CAGCTCGAGCGCGCGGGCGGTGTGGGCAGTGGGGTGGTGGTGGGAGAGTA
CTCGATGGGGGACGGCTGGCGCGATTTTCTCACGCCTCCCGAATACCCTC
GGAATATATTCGCCGATGCCCACATCTACATGATGTTTGACGACGCCGTG
GCCGACCTTGATGGCTGCAGACCACCACCGATGCCGTTCTCGCCACAGGG
TGGAAAGGCGACGTCTGGTTCCCTGACGGCTTTGCCCTAGACTGCAGCAT
CGCTGGTCTCTGTCTCCTCAACGAGCCGTGGACTACGGCCGTCGGTGGCC
CCGTCCAACTCGACACCCTCAAATCCTGATGGAAGTCCCTGGGCCGCGTC
GATATCCAGACATTCGACCAGAGCGACCTGGCCGTCGACAACTCCTTCAA
TAATTTACACTCCCCGTGGAGCTACCTCTCCTTGCTCACCGACGGCGTGG
CCAGCCCGAATCTGGCCAAGGCCACGCCACCATGTTAACTCTATAACGTC
ATTGGTGACAAACGTGAGAACGCAGCTGTTGGCGGATTTTTCTGGTCGTT
CAAGACTTCCGGAAGTGGCCGACGTCCTTCCCCTACAGCAACGAGACCCT
CACGGGCCTCCAAGACTTGCTTCTGGTTCAGCAGCATCGGCAGGCCAAGC
ACAGAATTTTTGCCGGGAGGACAATCACTACAGACAGCAGCTCGAGCGCG
CGGGCGGTGTGGGCAGTGGGGTGGTGGTGGGAGAGTACTCGATGGGGGAC
GGCTGGCGCGATTTTCTCACGCCTCCCGAATACCCTCGGAATATATTCGC
CGATGCCCACATCTACATGATGTTTGACGACGCCGTGGCCGACCTTGATG
GCTGCAGACCACCACCGATGCCGTTCTCGCCACAGGGTGGAAAGGCGACG
TCTGGTTCCCTGACGGCTTTGCCCTAGACTGCAGCATCGCTGGTCTCTGT
CTCCTCAACGAGCCGTGGACTACGGCCGTCGGTGGCCCCGTCCAACTCGA
CACCCTCAAATCCTGATGGAAGTCCCTGGGCCGCGTCGATATCCAGACAT
TCGACCAGAGCGACCTGGCCGTCGACAACTCCTTCAATAATTTACACTCC
CCGTGGAGCTACCTCTCCTTGCTCACCGACGGCGTGGCCAGCCCGAATCT
GGCCAAGGCCACGCCACCATGTTAACTCTATAACGTCATTGGTGACAAAC
GTGAGAACGCAGCTGTTGGCGGATTTTTCTGGTCGTTCAAGACTTCCGGA
AGTGGCCGACGTCCTTCCCCTACAGCAACGAGACCCTCACGGGCCTCCAA
GACTTGCTTCTGGTTCAGCAGCATCGGCAGGCCAAGCACAGAATTTTTGC
CGGGAGGACAATCACTACAGACAGCAGCTCGAGCGCGCGGGCGGTGTGGG
CAGTGGGGTGGTGGTGGGAGAGTACTCGATGGGGGACGGCTGGCGCGATT
TTCTCACGCCTCCCGAATACCCTCGGAATATATTCGCCGATGCCCACATC
TACATGATGTTTGACGACGCCGTGGCCGACCTTGATGGCTGCAGACCACC
ACCGATGCCGTTCTCGCCACAGGGTGGAAAGGCGACGTCTGGTTCCCTGA
CGGCTTTGCCCTAGACTGCAGCATCGCTGGTCTCTGTCTCCTCAACGAGC
CGTGGACTACGGCCGTCGGTGGCCCCGTCCAACTCGACACCCTCAAATCC
TGATGGAAGTCCCTGGGCCGCGTCGATATCCAGACATTCGACCAGAGCGA
CCTGGCCGTCGACAACTCCTTCAATAATTTACACTCCCCGTGGAGCTACC
TCTCCTTGCTCACCGACGGCGTGGCCAGCCCGAATCTGGCCAAGGCCACG
CCACCATGTTAACTCTATAACGTCATTGGTGACAAACGTGAGAACGCAGC
TGTTGGCGGATTTTTCTGGTCGTTCAAGACTTCCGGAAGTGGCCGACGTC
CTTCCCCTACAGCAACGAGACCCTCACGGGCCTCCAAGACTTGCTTCTGG
TTCAGCAGCATCGGCAGGCCAAGCACAGAATTTTTGCCGGGAGGACAATC
ACTACAGACAGCAGCTCGAGCGCGCGGGCGGTGTGGGCAGTGGGGTGGTG
GTGGGAGAGTACTCGATGGGGGACGGCTGGCGCGATTTTCTCACGCCTCC
CGAATACCCTCGGAATATATTCGCCGATGCCCACATCTACATGATGTTTG
ACGACGCCGTGGCCGACCTTGATGGCTGCAGACCACCACCGATGCCGTTC
TCGCCACAGGGTGGAAAGGCGACGTCTGGTTCCCTGACGGCTTTGCCCTA
GACTGCAGCATCGCTGGTCTCTGTCTCCTCAACGAGCCGTGGACTACGGC
CGTCGGTGGCCCCGTCCAACTCGACACCCTCAAATCCTGATGGAAG back to top
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