jgi.p|Nanoce1779_2|634354, mRNA_10848 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|634354
Unique NamemRNA_10848
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1026
Alignment locationscaffold_72:66850..68161 -

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Properties
Property NameValue
TranscriptId634440
TrackFilteredModels2
ProteinId634354
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_72supercontigscaffold_72:66850..68161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634354gene_10848Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634354mRNA_10848-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10848CDS_10848Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10848 ID=mRNA_10848|Name=jgi.p|Nanoce1779_2|634354|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
AACAGCATTAGCAATGGCCTCCTCTACGCTCGAGGGACCAGCACAAGCTG
CGGGTAATGGTCAGACGCCGTCTTCACGGAAGAGGACCTTAATTTTGGGG
CTTGTTGCAGGTGTTCTGGTCGTAGGGGCTATTTTTGGCGGTGTCTTTGG
GGCTAAAGCTGTTGAAAAAAAGAGGCGGATTCCTATTCCCGTGGAAGCTG
TGACGTATGCAATGGTTGCGAATGGATTTGCCAAAGGTGCTGTGGTACCT
GTTCCAAACAAGTACAAAGGCACGAACGCCAATTCTTCTGAGACAGCAAC
GATGACAGCAACGACGACAGCAACGACGACGGCTGATAAAGCTCCCGCTG
GAACAGGACTTGGTGGCGAGCATTCTATTTTCAGCTACGAATATTGGTTT
GGTGAAGGTGGAATTGGAGCTGTCCCCATGTTCGACCCCATGCCTTTGGT
ACTTCCGCCCGACGCTGTCACAGTGCCCACGTGGTCGGCAGCCTTTGCAA
ATGGTAATTTCGCCAACACGCAGGGTCGTGTGGTGTGCTATGCCACGACA
GGACAGGAAGTGATCGACATGGTTAGCGGCGACGAAAGTGCCTGTGAGGT
GATTATCCTGACGAATGATCGATTTACTCCTTATTCCATTCACACGGTAA
TGAATGTGACTAAATCCAAGCTCATCATCGGTCGACCCATTTACGCTCCC
ATGCTGAACTCCACAAACCGTGTCGAACGTCTCTTTGACGTTCTCCCTGG
TGGACGTCTGGAGACTCGCAATGTCATCATGGTGCGTGGTTTTGGTCGCA
ATTTAGGTATCAATGGGAACGAGATCAACTTGGTTGTTGGTAGCATAGCT
CGTGTGCATGTGGGCGGGCAATTTTCGGCAGTCACCTCTATGTTTCGTGA
GCGAAACAATACGCTCCCTACTTTTATTGACGAAGTCCGACGAAAGATCC
GAACTCCGACTGCCCGCAATCGTCAATTTGGTCAACTGATTTTAGTCATG
GGTGGATCCCTTACCCTTACAGCATG
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protein sequence of jgi.p|Nanoce1779_2|634354

>mRNA_10848-protein ID=mRNA_10848-protein|Name=jgi.p|Nanoce1779_2|634354|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MASSTLEGPAQAAGNGQTPSSRKRTLILGLVAGVLVVGAIFGGVFGAKAV
EKKRRIPIPVEAVTYAMVANGFAKGAVVPVPNKYKGTNANSSETATMTAT
TTATTTADKAPAGTGLGGEHSIFSYEYWFGEGGIGAVPMFDPMPLVLPPD
AVTVPTWSAAFANGNFANTQGRVVCYATTGQEVIDMVSGDESACEVIILT
NDRFTPYSIHTVMNVTKSKLIIGRPIYAPMLNSTNRVERLFDVLPGGRLE
TRNVIMVRGFGRNLGINGNEINLVVGSIARVHVGGQFSAVTSMFRERNNT
LPTFIDEVRRKIRTPTARNRQFGQLILVMGGSLTLTA
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mRNA from alignment at scaffold_72:66850..68161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10848 ID=mRNA_10848|Name=jgi.p|Nanoce1779_2|634354|organism=Nannochloropsis oceanica|type=mRNA|length=1312bp|location=Sequence derived from alignment at scaffold_72:66850..68161- (Nannochloropsis oceanica)
AACAGCATTAGCAATGGCCTCCTCTACGCTCGAGGGACCAGCACAAGCTG
CGGGTAATGGTCAGACGCCGTCTTCACGGAAGAGGACCTTAATTTTGGGG
CTTGTTGCAGGTGTTCTGGTCGTAGGGGCTATTTTTGGCGGTGTCTTTGG
GGCTAAAGCTGTTGAAAAAAAGAGGCGGATTCCTATTCCCGTGGAAGCTG
TGACGTATGCAATGGTTGCGAATGGATTTGCCAAAGGTGCTGTGGTACCT
GTTCCAAACAAGTACAAAGGCACGAACGCCAATTCTTCTGAGACAGCAAC
GATGACAGCAACGACGACAGCAACGACGACGGCTGATAAAGCTCCCGCTG
GAACAGGACTTGGTGGCGAGCATTCTATTTTCAGCTACGAATATTGGTTT
GGTGAAGGTGGAATTGGAGCTGTCCCCATGTTCGACCCCATGCCTTTGGT
ACTTCCGCCCGACGCTGTCACAGTGCCCACGTGGTCGGCAGCCTTTGCAA
ATGGTAATTTCGCCAACACGCAGGGTCGTGTGGTGTGCTATGCCACGACA
GGACAGGAAGTGATCGACATGGTTAGCGGCGACGAAAGTGCCTGTGAGGT
GATTATCCTGACGAATGATCGATTTACTCCTTATTCCATTCACACGGTAA
TGAATGTGACTAAATCCAAGCTCATCATCGGTCGACCCATTTACGCTCCC
ATGCTGAACTCCACAAACCGTGTCGAACGTCTCTTTGACGGTAAGTTCAT
AGACTTGTTTACGCTTTGTTTCCTAGTTATTTTAACACGAATACTTATGC
CTCGCCTACCATTTGATTTCTGGGGGATGTATAGTTCTCCCTGGTGGACG
TCTGGAGACTCGCAATGTCATCATGGTGCGTGGTTTTGGTCGCAATTTAG
GTATCAATGGGAACGAGATCAACTTGGTTGTTGGTAGCATAGCTCGTGTG
CATGTGGGCGGGCAATTTTCGGCAGTCACGTAAGTAACTTGTTTGTAAGG
GATTTTTCAGCGAAAATAGCGGGAATGACAAACTTCTCATCTATAGATCT
CTTTTGTGTCATAAGGATTCATGCGGACTTTACGCAAGTTTATGTGGATA
GCAAATCTCTGGATAGAATCCTTTCTCTTACATCCGATTACACCCCATAA
TTATCTCATACGTCCGCACAGCTCTATGTTTCGTGAGCGAAACAATACGC
TCCCTACTTTTATTGACGAAGTCCGACGAAAGATCCGAACTCCGACTGCC
CGCAATCGTCAATTTGGTCAACTGATTTTAGTCATGGGTGGATCCCTTAC
CCTTACAGCATG
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Coding sequence (CDS) from alignment at scaffold_72:66850..68161-

>mRNA_10848 ID=mRNA_10848|Name=jgi.p|Nanoce1779_2|634354|organism=Nannochloropsis oceanica|type=CDS|length=3033bp|location=Sequence derived from alignment at scaffold_72:66850..68161- (Nannochloropsis oceanica)
CTCTATGTTTCGTGAGCGAAACAATACGCTCCCTACTTTTATTGACGAAG
TCCGACGAAAGATCCGAACTCCGACTGCCCGCAATCGTCAATTTGGTCAA
CTGATTTTAGTCATGGGTGGATCCCTTACCCTTACAGCATTCTCCCTGGT
GGACGTCTGGAGACTCGCAATGTCATCATGGTGCGTGGTTTTGGTCGCAA
TTTAGGTATCAATGGGAACGAGATCAACTTGGTTGTTGGTAGCATAGCTC
GTGTGCATGTGGGCGGGCAATTTTCGGCAGTCACATGGCCTCCTCTACGC
TCGAGGGACCAGCACAAGCTGCGGGTAATGGTCAGACGCCGTCTTCACGG
AAGAGGACCTTAATTTTGGGGCTTGTTGCAGGTGTTCTGGTCGTAGGGGC
TATTTTTGGCGGTGTCTTTGGGGCTAAAGCTGTTGAAAAAAAGAGGCGGA
TTCCTATTCCCGTGGAAGCTGTGACGTATGCAATGGTTGCGAATGGATTT
GCCAAAGGTGCTGTGGTACCTGTTCCAAACAAGTACAAAGGCACGAACGC
CAATTCTTCTGAGACAGCAACGATGACAGCAACGACGACAGCAACGACGA
CGGCTGATAAAGCTCCCGCTGGAACAGGACTTGGTGGCGAGCATTCTATT
TTCAGCTACGAATATTGGTTTGGTGAAGGTGGAATTGGAGCTGTCCCCAT
GTTCGACCCCATGCCTTTGGTACTTCCGCCCGACGCTGTCACAGTGCCCA
CGTGGTCGGCAGCCTTTGCAAATGGTAATTTCGCCAACACGCAGGGTCGT
GTGGTGTGCTATGCCACGACAGGACAGGAAGTGATCGACATGGTTAGCGG
CGACGAAAGTGCCTGTGAGGTGATTATCCTGACGAATGATCGATTTACTC
CTTATTCCATTCACACGGTAATGAATGTGACTAAATCCAAGCTCATCATC
GGTCGACCCATTTACGCTCCCATGCTGAACTCCACAAACCGTGTCGAACG
TCTCTTTGACGCTCTATGTTTCGTGAGCGAAACAATACGCTCCCTACTTT
TATTGACGAAGTCCGACGAAAGATCCGAACTCCGACTGCCCGCAATCGTC
AATTTGGTCAACTGATTTTAGTCATGGGTGGATCCCTTACCCTTACAGCA
TTCTCCCTGGTGGACGTCTGGAGACTCGCAATGTCATCATGGTGCGTGGT
TTTGGTCGCAATTTAGGTATCAATGGGAACGAGATCAACTTGGTTGTTGG
TAGCATAGCTCGTGTGCATGTGGGCGGGCAATTTTCGGCAGTCACATGGC
CTCCTCTACGCTCGAGGGACCAGCACAAGCTGCGGGTAATGGTCAGACGC
CGTCTTCACGGAAGAGGACCTTAATTTTGGGGCTTGTTGCAGGTGTTCTG
GTCGTAGGGGCTATTTTTGGCGGTGTCTTTGGGGCTAAAGCTGTTGAAAA
AAAGAGGCGGATTCCTATTCCCGTGGAAGCTGTGACGTATGCAATGGTTG
CGAATGGATTTGCCAAAGGTGCTGTGGTACCTGTTCCAAACAAGTACAAA
GGCACGAACGCCAATTCTTCTGAGACAGCAACGATGACAGCAACGACGAC
AGCAACGACGACGGCTGATAAAGCTCCCGCTGGAACAGGACTTGGTGGCG
AGCATTCTATTTTCAGCTACGAATATTGGTTTGGTGAAGGTGGAATTGGA
GCTGTCCCCATGTTCGACCCCATGCCTTTGGTACTTCCGCCCGACGCTGT
CACAGTGCCCACGTGGTCGGCAGCCTTTGCAAATGGTAATTTCGCCAACA
CGCAGGGTCGTGTGGTGTGCTATGCCACGACAGGACAGGAAGTGATCGAC
ATGGTTAGCGGCGACGAAAGTGCCTGTGAGGTGATTATCCTGACGAATGA
TCGATTTACTCCTTATTCCATTCACACGGTAATGAATGTGACTAAATCCA
AGCTCATCATCGGTCGACCCATTTACGCTCCCATGCTGAACTCCACAAAC
CGTGTCGAACGTCTCTTTGACGCTCTATGTTTCGTGAGCGAAACAATACG
CTCCCTACTTTTATTGACGAAGTCCGACGAAAGATCCGAACTCCGACTGC
CCGCAATCGTCAATTTGGTCAACTGATTTTAGTCATGGGTGGATCCCTTA
CCCTTACAGCATTCTCCCTGGTGGACGTCTGGAGACTCGCAATGTCATCA
TGGTGCGTGGTTTTGGTCGCAATTTAGGTATCAATGGGAACGAGATCAAC
TTGGTTGTTGGTAGCATAGCTCGTGTGCATGTGGGCGGGCAATTTTCGGC
AGTCACATGGCCTCCTCTACGCTCGAGGGACCAGCACAAGCTGCGGGTAA
TGGTCAGACGCCGTCTTCACGGAAGAGGACCTTAATTTTGGGGCTTGTTG
CAGGTGTTCTGGTCGTAGGGGCTATTTTTGGCGGTGTCTTTGGGGCTAAA
GCTGTTGAAAAAAAGAGGCGGATTCCTATTCCCGTGGAAGCTGTGACGTA
TGCAATGGTTGCGAATGGATTTGCCAAAGGTGCTGTGGTACCTGTTCCAA
ACAAGTACAAAGGCACGAACGCCAATTCTTCTGAGACAGCAACGATGACA
GCAACGACGACAGCAACGACGACGGCTGATAAAGCTCCCGCTGGAACAGG
ACTTGGTGGCGAGCATTCTATTTTCAGCTACGAATATTGGTTTGGTGAAG
GTGGAATTGGAGCTGTCCCCATGTTCGACCCCATGCCTTTGGTACTTCCG
CCCGACGCTGTCACAGTGCCCACGTGGTCGGCAGCCTTTGCAAATGGTAA
TTTCGCCAACACGCAGGGTCGTGTGGTGTGCTATGCCACGACAGGACAGG
AAGTGATCGACATGGTTAGCGGCGACGAAAGTGCCTGTGAGGTGATTATC
CTGACGAATGATCGATTTACTCCTTATTCCATTCACACGGTAATGAATGT
GACTAAATCCAAGCTCATCATCGGTCGACCCATTTACGCTCCCATGCTGA
ACTCCACAAACCGTGTCGAACGTCTCTTTGACG
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Synonyms
Publications