jgi.p|Nanoce1779_2|405598, mRNA_10828 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|405598
Unique NamemRNA_10828
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length458
Alignment locationscaffold_72:4103..4560 +

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Properties
Property NameValue
TranscriptId405684
TrackFilteredModels2
ProteinId405598
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_72supercontigscaffold_72:4103..4560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|405598gene_10828Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|405598mRNA_10828-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10828CDS_10828Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10828 ID=mRNA_10828|Name=jgi.p|Nanoce1779_2|405598|organism=Nannochloropsis oceanica|type=mRNA|length=458bp
TTCAAATGGGCAGTTAAATTGGGCCCGTATGCGCCCAGCGACCTGCTGGA
GGAACCTTGTCATTGGCGGTGGCGTGTCGGGTGGTGGATATGCGGGCGTC
TCCTTATGATCTAACTGTGCTCCGAGAAATAAGCGGTGCTGAACTACAGC
AGCAGCAGCAGCAGGAGGGATATGCATTCCCAGTATCGCCTATTAAGATC
GAAACGGAAGAGGGACGGAGGGAGTACCAGGCGGAGCAGCAGGTGCTGTT
TGAGAGAGCGCAGCCATTGCGAGCGCGTCTGATAAAGGCTTATGACTTAT
TTTTCAGGGCCTACGAGGCAGGGAGGGAGGAAGGAAAAGACGAAATCGCC
GAGAAAAAAAGAGGCATTATAGGACATGAATGAATGACTGACCTGTTATA
GACTTAGCAGCAATGAAATTAAACAAATATGGCGACCCACATGATCCGTT
TATTAAAA
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protein sequence of jgi.p|Nanoce1779_2|405598

>mRNA_10828-protein ID=mRNA_10828-protein|Name=jgi.p|Nanoce1779_2|405598|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MRASPYDLTVLREISGAELQQQQQQEGYAFPVSPIKIETEEGRREYQAEQ
QVLFERAQPLRARLIKAYDLFFRAYEAGREEGKDEIAEKKRGIIGHE*
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mRNA from alignment at scaffold_72:4103..4560+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10828 ID=mRNA_10828|Name=jgi.p|Nanoce1779_2|405598|organism=Nannochloropsis oceanica|type=mRNA|length=458bp|location=Sequence derived from alignment at scaffold_72:4103..4560+ (Nannochloropsis oceanica)
TTCAAATGGGCAGTTAAATTGGGCCCGTATGCGCCCAGCGACCTGCTGGA
GGAACCTTGTCATTGGCGGTGGCGTGTCGGGTGGTGGATATGCGGGCGTC
TCCTTATGATCTAACTGTGCTCCGAGAAATAAGCGGTGCTGAACTACAGC
AGCAGCAGCAGCAGGAGGGATATGCATTCCCAGTATCGCCTATTAAGATC
GAAACGGAAGAGGGACGGAGGGAGTACCAGGCGGAGCAGCAGGTGCTGTT
TGAGAGAGCGCAGCCATTGCGAGCGCGTCTGATAAAGGCTTATGACTTAT
TTTTCAGGGCCTACGAGGCAGGGAGGGAGGAAGGAAAAGACGAAATCGCC
GAGAAAAAAAGAGGCATTATAGGACATGAATGAATGACTGACCTGTTATA
GACTTAGCAGCAATGAAATTAAACAAATATGGCGACCCACATGATCCGTT
TATTAAAA
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Coding sequence (CDS) from alignment at scaffold_72:4103..4560+

>mRNA_10828 ID=mRNA_10828|Name=jgi.p|Nanoce1779_2|405598|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at scaffold_72:4103..4560+ (Nannochloropsis oceanica)
ATGCGGGCGTCTCCTTATGATCTAACTGTGCTCCGAGAAATAAGCGGTGC
TGAACTACAGCAGCAGCAGCAGCAGGAGGGATATGCATTCCCAGTATCGC
CTATTAAGATCGAAACGGAAGAGGGACGGAGGGAGTACCAGGCGGAGCAG
CAGGTGCTGTTTGAGAGAGCGCAGCCATTGCGAGCGCGTCTGATAAAGGC
TTATGACTTATTTTTCAGGGCCTACGAGGCAGGGAGGGAGGAAGGAAAAG
ACGAAATCGCCGAGAAAAAAAGAGGCATTATAGGACATGAATGA
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Synonyms
Publications