jgi.p|Nanoce1779_2|613278, mRNA_10839 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613278
Unique NamemRNA_10839
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length699
Alignment locationscaffold_72:40509..41416 +

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Properties
Property NameValue
TranscriptId613364
TrackFilteredModels2
ProteinId613278
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_72supercontigscaffold_72:40509..41416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613278gene_10839Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613278mRNA_10839-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10839CDS_10839Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10839 ID=mRNA_10839|Name=jgi.p|Nanoce1779_2|613278|organism=Nannochloropsis oceanica|type=mRNA|length=699bp
AGCCCGTTAGGCAAAAGACCACACACGCCTGCCGTGGTGCGGGTCCAAGA
AAGAAGAATGTTCACCAAACTCTTTAACAGCGGTAGTAAAAATGGCAACT
CGAGCAAGCCCTTCGAAGGGGACGTGGAGAGTCTGTGGTATTTAGACGGC
AAGGCGTATGATTTGGGCAAGTTTGTCAAGATGCATCCAGGTGGCGCCGA
CGTCCTCCTCGAGCTCCGAGGAAAAAATGGCACCTCTGCTTTTCATGATG
CTCACGGGACAAGTCCTTCCTCCGCCCCTCACAAGAAACTATTGCGGATG
GAAGTGAAGGGGGTGAGTGCGGAGGTCCTGGCGCTAAAATTCCCGAAGAG
TGAGCAAGTTGCGCCATAGAGAGGAAGAATCAAATGACTGCTTATACATC
AAGTGAGTGCTGCTGGTACTGGATTTGAAGGGTGGGTGTTAAAAGTGATT
GCCGAGGCGTGGGTAGCGGAGATTTTAGATGGCTAGTAGCAAAGAGGGCA
AGGTATTTACTCGTTGATCCATCGAGAGACGGCTAGCTACCATACGGTCG
GGAAGAAGAAAACAATGACGAGCTTGAACATCAAGGCTACACTACTCCTG
CTGCTGTCGCTCGATCTTGATGATAATCAATTTAGGATTTGTCTTTTTTC
CGTTCCTCGTCTGTCTCGCAGAAGCCGATGCGTTCTCTTGCTCCCTCTC
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protein sequence of jgi.p|Nanoce1779_2|613278

>mRNA_10839-protein ID=mRNA_10839-protein|Name=jgi.p|Nanoce1779_2|613278|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MFTKLFNSGSKNGNSSKPFEGDVESLWYLDGKAYDLGKFVKMHPGGADVL
LELRGKNGTSAFHDAHGTSPSSAPHKKLLRMEVKGVSAEVLALKFPKSEQ
VAP*
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mRNA from alignment at scaffold_72:40509..41416+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10839 ID=mRNA_10839|Name=jgi.p|Nanoce1779_2|613278|organism=Nannochloropsis oceanica|type=mRNA|length=908bp|location=Sequence derived from alignment at scaffold_72:40509..41416+ (Nannochloropsis oceanica)
AGCCCGTTAGGCAAAAGACCACACACGCCTGCCGTGGTGCGGGTCCAAGA
AAGAAGAATGTTCACCAAACTCTTTAACAGCGGTAGTAAAAATGGCAACT
CGAGCAAGCCCTTCGAAGGGGACGTGGAGAGTCTGTGGTATTTAGACGGC
AAGGCGTATGATTTGGGCAAGTTTGTCAAGATGCATCCAGGTAAGCAGGG
AAAGCAGATGAACTGCTGTAGGAGGATATAAGTAGCAAAATGAATATGAA
AGAAAGCAAAGTCGATGTGTGTTTATCCAACCATGTATGTGTGTTGTGTT
TTTCATACGTCGAAACAACACTCCCGTATCCCTTACCCCTCCCCCTCTCT
CCCATCCTTCCTTCCCACCCTCCTCTCCCCTTCCTTCTCGAACGCACAGG
TGGCGCCGACGTCCTCCTCGAGCTCCGAGGAAAAAATGGCACCTCTGCTT
TTCATGATGCTCACGGGACAAGTCCTTCCTCCGCCCCTCACAAGAAACTA
TTGCGGATGGAAGTGAAGGGGGTGAGTGCGGAGGTCCTGGCGCTAAAATT
CCCGAAGAGTGAGCAAGTTGCGCCATAGAGAGGAAGAATCAAATGACTGC
TTATACATCAAGTGAGTGCTGCTGGTACTGGATTTGAAGGGTGGGTGTTA
AAAGTGATTGCCGAGGCGTGGGTAGCGGAGATTTTAGATGGCTAGTAGCA
AAGAGGGCAAGGTATTTACTCGTTGATCCATCGAGAGACGGCTAGCTACC
ATACGGTCGGGAAGAAGAAAACAATGACGAGCTTGAACATCAAGGCTACA
CTACTCCTGCTGCTGTCGCTCGATCTTGATGATAATCAATTTAGGATTTG
TCTTTTTTCCGTTCCTCGTCTGTCTCGCAGAAGCCGATGCGTTCTCTTGC
TCCCTCTC
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Coding sequence (CDS) from alignment at scaffold_72:40509..41416+

>mRNA_10839 ID=mRNA_10839|Name=jgi.p|Nanoce1779_2|613278|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_72:40509..41416+ (Nannochloropsis oceanica)
ATGTTCACCAAACTCTTTAACAGCGGTAGTAAAAATGGCAACTCGAGCAA
GCCCTTCGAAGGGGACGTGGAGAGTCTGTGGTATTTAGACGGCAAGGCGT
ATGATTTGGGCAAGTTTGTCAAGATGCATCCAGGTGGCGCCGACGTCCTC
CTCGAGCTCCGAGGAAAAAATGGCACCTCTGCTTTTCATGATGCTCACGG
GACAAGTCCTTCCTCCGCCCCTCACAAGAAACTATTGCGGATGGAAGTGA
AGGGGGTGAGTGCGGAGGTCCTGGCGCTAAAATTCCCGAAGAGTGAGCAA
GTTGCGCCATAGATGTTCACCAAACTCTTTAACAGCGGTAGTAAAAATGG
CAACTCGAGCAAGCCCTTCGAAGGGGACGTGGAGAGTCTGTGGTATTTAG
ACGGCAAGGCGTATGATTTGGGCAAGTTTGTCAAGATGCATCCAGGTGGC
GCCGACGTCCTCCTCGAGCTCCGAGGAAAAAATGGCACCTCTGCTTTTCA
TGATGCTCACGGGACAAGTCCTTCCTCCGCCCCTCACAAGAAACTATTGC
GGATGGAAGTGAAGGGGGTGAGTGCGGAGGTCCTGGCGCTAAAATTCCCG
AAGAGTGAGCAAGTTGCGCCATAG
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Synonyms
Publications