scaffold_110, scaffold_110 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_110
Unique Name	scaffold_110
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	40767
Alignment location	jgi.p\|Nanoce1779_2\|41671:1859..3288 +
Alignment location	jgi.p\|Nanoce1779_2\|41671:1859..3288 +
Alignment location	CDS_11265:2298..3041 +
Alignment location	jgi.p\|Nanoce1779_2\|41951:19116..23117 +
Alignment location	jgi.p\|Nanoce1779_2\|41951:19116..23117 +
Alignment location	CDS_11274:19455..19642 +
Alignment location	CDS_11274:19869..20475 +
Alignment location	CDS_11274:20665..20757 +
Alignment location	CDS_11274:20867..21702 +
Alignment location	CDS_11274:21901..22675 +
Alignment location	jgi.p\|Nanoce1779_2\|42276:29889..35203 -
Alignment location	jgi.p\|Nanoce1779_2\|42276:29889..35203 -
Alignment location	CDS_11277:34775..34979 -
Alignment location	CDS_11277:34350..34585 -
Alignment location	CDS_11277:34046..34217 -
Alignment location	CDS_11277:33810..33936 -
Alignment location	CDS_11277:33552..33681 -
Alignment location	CDS_11277:33051..33253 -
Alignment location	CDS_11277:32782..32878 -
Alignment location	CDS_11277:32507..32596 -
Alignment location	CDS_11277:32227..32272 -
Alignment location	CDS_11277:31963..32118 -
Alignment location	CDS_11277:31613..31711 -
Alignment location	CDS_11277:31329..31441 -
Alignment location	CDS_11277:30817..31087 -
Alignment location	CDS_11277:30071..30747 -
Alignment location	jgi.p\|Nanoce1779_2\|534572:27939..28694 -
Alignment location	jgi.p\|Nanoce1779_2\|534572:27939..28694 -
Alignment location	CDS_11276:27939..28694 -
Alignment location	jgi.p\|Nanoce1779_2\|615928:7810..11647 +
Alignment location	jgi.p\|Nanoce1779_2\|615928:7810..11647 +
Alignment location	CDS_11267:7926..8114 +
Alignment location	CDS_11267:8244..8341 +
Alignment location	CDS_11267:8495..8639 +
Alignment location	CDS_11267:8848..8991 +
Alignment location	CDS_11267:9198..9290 +
Alignment location	CDS_11267:9513..9708 +
Alignment location	CDS_11267:9856..10010 +
Alignment location	CDS_11267:10242..10460 +
Alignment location	jgi.p\|Nanoce1779_2\|615934:13829..14387 -
Alignment location	jgi.p\|Nanoce1779_2\|615934:13829..14387 -
Alignment location	CDS_11270:13992..14216 -
Alignment location	jgi.p\|Nanoce1779_2\|615938:14347..16282 -
Alignment location	jgi.p\|Nanoce1779_2\|615938:14347..16282 -
Alignment location	CDS_11271:16200..16252 -
Alignment location	CDS_11271:15888..16061 -
Alignment location	CDS_11271:15564..15777 -
Alignment location	CDS_11271:15350..15445 -
Alignment location	CDS_11271:15082..15195 -
Alignment location	jgi.p\|Nanoce1779_2\|615941:16905..18512 +
Alignment location	jgi.p\|Nanoce1779_2\|615941:16905..18512 +
Alignment location	CDS_11272:17116..17186 +
Alignment location	CDS_11272:17501..17732 +
Alignment location	CDS_11272:17911..18057 +
Alignment location	CDS_11272:18290..18418 +
Alignment location	jgi.p\|Nanoce1779_2\|615945:18488..19300 +
Alignment location	jgi.p\|Nanoce1779_2\|615945:18488..19300 +
Alignment location	CDS_11273:18753..19214 +
Alignment location	jgi.p\|Nanoce1779_2\|615959:22868..24465 -
Alignment location	jgi.p\|Nanoce1779_2\|615959:22868..24465 -
Alignment location	CDS_11275:23560..24297 -
Alignment location	jgi.p\|Nanoce1779_2\|615977:35567..37784 +
Alignment location	jgi.p\|Nanoce1779_2\|615977:35567..37784 +
Alignment location	CDS_11278:35603..37693 +
Alignment location	jgi.p\|Nanoce1779_2\|615980:37984..40767 +
Alignment location	jgi.p\|Nanoce1779_2\|615980:37984..40767 +
Alignment location	CDS_11279:38534..38598 +
Alignment location	CDS_11279:38854..40678 +
Alignment location	jgi.p\|Nanoce1779_2\|634687:12245..14387 +
Alignment location	jgi.p\|Nanoce1779_2\|634687:12245..14387 +
Alignment location	CDS_11269:12272..12472 +
Alignment location	CDS_11269:12587..13870 +
Alignment location	jgi.p\|Nanoce1779_2\|675458:14..1753 -
Alignment location	jgi.p\|Nanoce1779_2\|675458:14..1753 -
Alignment location	CDS_11264:1288..1547 -
Alignment location	CDS_11264:800..827 -
Alignment location	CDS_11264:393..478 -
Alignment location	CDS_11264:159..265 -
Alignment location	CDS_11264:14..36 -
Alignment location	jgi.p\|Nanoce1779_2\|41671:2298..3041 +
Alignment location	jgi.p\|Nanoce1779_2\|41951:19455..22675 +
Alignment location	jgi.p\|Nanoce1779_2\|42276:30071..34979 -
Alignment location	jgi.p\|Nanoce1779_2\|534572:27939..28694 -
Alignment location	jgi.p\|Nanoce1779_2\|615928:7926..10460 +
Alignment location	jgi.p\|Nanoce1779_2\|615934:13992..14216 -
Alignment location	jgi.p\|Nanoce1779_2\|615938:15082..16252 -
Alignment location	jgi.p\|Nanoce1779_2\|615941:17116..18418 +
Alignment location	jgi.p\|Nanoce1779_2\|615945:18753..19214 +
Alignment location	jgi.p\|Nanoce1779_2\|615959:23560..24297 -
Alignment location	jgi.p\|Nanoce1779_2\|615977:35603..37693 +
Alignment location	jgi.p\|Nanoce1779_2\|615980:38534..40678 +
Alignment location	jgi.p\|Nanoce1779_2\|634687:12272..13870 +
Alignment location	jgi.p\|Nanoce1779_2\|675458:14..1547 -
Alignment location	ncniL080:7811..40767 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|41671	gene	jgi.p\|Nanoce1779_2\|41671:1859..3288 +
jgi.p\|Nanoce1779_2\|41671	mRNA	jgi.p\|Nanoce1779_2\|41671:1859..3288 +
CDS_11265	CDS	CDS_11265:2298..3041 +
jgi.p\|Nanoce1779_2\|41951	gene	jgi.p\|Nanoce1779_2\|41951:19116..23117 +
jgi.p\|Nanoce1779_2\|41951	mRNA	jgi.p\|Nanoce1779_2\|41951:19116..23117 +
CDS_11274	CDS	CDS_11274:19455..19642 +
CDS_11274	CDS	CDS_11274:19869..20475 +
CDS_11274	CDS	CDS_11274:20665..20757 +
CDS_11274	CDS	CDS_11274:20867..21702 +
CDS_11274	CDS	CDS_11274:21901..22675 +
jgi.p\|Nanoce1779_2\|42276	gene	jgi.p\|Nanoce1779_2\|42276:29889..35203 -
jgi.p\|Nanoce1779_2\|42276	mRNA	jgi.p\|Nanoce1779_2\|42276:29889..35203 -
CDS_11277	CDS	CDS_11277:34775..34979 -
CDS_11277	CDS	CDS_11277:34350..34585 -
CDS_11277	CDS	CDS_11277:34046..34217 -
CDS_11277	CDS	CDS_11277:33810..33936 -
CDS_11277	CDS	CDS_11277:33552..33681 -
CDS_11277	CDS	CDS_11277:33051..33253 -
CDS_11277	CDS	CDS_11277:32782..32878 -
CDS_11277	CDS	CDS_11277:32507..32596 -
CDS_11277	CDS	CDS_11277:32227..32272 -
CDS_11277	CDS	CDS_11277:31963..32118 -
CDS_11277	CDS	CDS_11277:31613..31711 -
CDS_11277	CDS	CDS_11277:31329..31441 -
CDS_11277	CDS	CDS_11277:30817..31087 -
CDS_11277	CDS	CDS_11277:30071..30747 -
jgi.p\|Nanoce1779_2\|534572	gene	jgi.p\|Nanoce1779_2\|534572:27939..28694 -
jgi.p\|Nanoce1779_2\|534572	mRNA	jgi.p\|Nanoce1779_2\|534572:27939..28694 -
CDS_11276	CDS	CDS_11276:27939..28694 -
jgi.p\|Nanoce1779_2\|615928	gene	jgi.p\|Nanoce1779_2\|615928:7810..11647 +
jgi.p\|Nanoce1779_2\|615928	mRNA	jgi.p\|Nanoce1779_2\|615928:7810..11647 +
CDS_11267	CDS	CDS_11267:7926..8114 +
CDS_11267	CDS	CDS_11267:8244..8341 +
CDS_11267	CDS	CDS_11267:8495..8639 +
CDS_11267	CDS	CDS_11267:8848..8991 +
CDS_11267	CDS	CDS_11267:9198..9290 +
CDS_11267	CDS	CDS_11267:9513..9708 +
CDS_11267	CDS	CDS_11267:9856..10010 +
CDS_11267	CDS	CDS_11267:10242..10460 +
jgi.p\|Nanoce1779_2\|615934	gene	jgi.p\|Nanoce1779_2\|615934:13829..14387 -
jgi.p\|Nanoce1779_2\|615934	mRNA	jgi.p\|Nanoce1779_2\|615934:13829..14387 -
CDS_11270	CDS	CDS_11270:13992..14216 -
jgi.p\|Nanoce1779_2\|615938	gene	jgi.p\|Nanoce1779_2\|615938:14347..16282 -
jgi.p\|Nanoce1779_2\|615938	mRNA	jgi.p\|Nanoce1779_2\|615938:14347..16282 -
CDS_11271	CDS	CDS_11271:16200..16252 -
CDS_11271	CDS	CDS_11271:15888..16061 -
CDS_11271	CDS	CDS_11271:15564..15777 -
CDS_11271	CDS	CDS_11271:15350..15445 -
CDS_11271	CDS	CDS_11271:15082..15195 -
jgi.p\|Nanoce1779_2\|615941	gene	jgi.p\|Nanoce1779_2\|615941:16905..18512 +
jgi.p\|Nanoce1779_2\|615941	mRNA	jgi.p\|Nanoce1779_2\|615941:16905..18512 +
CDS_11272	CDS	CDS_11272:17116..17186 +
CDS_11272	CDS	CDS_11272:17501..17732 +
CDS_11272	CDS	CDS_11272:17911..18057 +
CDS_11272	CDS	CDS_11272:18290..18418 +
jgi.p\|Nanoce1779_2\|615945	gene	jgi.p\|Nanoce1779_2\|615945:18488..19300 +
jgi.p\|Nanoce1779_2\|615945	mRNA	jgi.p\|Nanoce1779_2\|615945:18488..19300 +
CDS_11273	CDS	CDS_11273:18753..19214 +
jgi.p\|Nanoce1779_2\|615959	gene	jgi.p\|Nanoce1779_2\|615959:22868..24465 -
jgi.p\|Nanoce1779_2\|615959	mRNA	jgi.p\|Nanoce1779_2\|615959:22868..24465 -
CDS_11275	CDS	CDS_11275:23560..24297 -
jgi.p\|Nanoce1779_2\|615977	gene	jgi.p\|Nanoce1779_2\|615977:35567..37784 +
jgi.p\|Nanoce1779_2\|615977	mRNA	jgi.p\|Nanoce1779_2\|615977:35567..37784 +
CDS_11278	CDS	CDS_11278:35603..37693 +
jgi.p\|Nanoce1779_2\|615980	gene	jgi.p\|Nanoce1779_2\|615980:37984..40767 +
jgi.p\|Nanoce1779_2\|615980	mRNA	jgi.p\|Nanoce1779_2\|615980:37984..40767 +
CDS_11279	CDS	CDS_11279:38534..38598 +
CDS_11279	CDS	CDS_11279:38854..40678 +
jgi.p\|Nanoce1779_2\|634687	gene	jgi.p\|Nanoce1779_2\|634687:12245..14387 +
jgi.p\|Nanoce1779_2\|634687	mRNA	jgi.p\|Nanoce1779_2\|634687:12245..14387 +
CDS_11269	CDS	CDS_11269:12272..12472 +
CDS_11269	CDS	CDS_11269:12587..13870 +
jgi.p\|Nanoce1779_2\|675458	gene	jgi.p\|Nanoce1779_2\|675458:14..1753 -
jgi.p\|Nanoce1779_2\|675458	mRNA	jgi.p\|Nanoce1779_2\|675458:14..1753 -
CDS_11264	CDS	CDS_11264:1288..1547 -
CDS_11264	CDS	CDS_11264:800..827 -
CDS_11264	CDS	CDS_11264:393..478 -
CDS_11264	CDS	CDS_11264:159..265 -
CDS_11264	CDS	CDS_11264:14..36 -
jgi.p\|Nanoce1779_2\|41671	polypeptide	jgi.p\|Nanoce1779_2\|41671:2298..3041 +
jgi.p\|Nanoce1779_2\|41951	polypeptide	jgi.p\|Nanoce1779_2\|41951:19455..22675 +
jgi.p\|Nanoce1779_2\|42276	polypeptide	jgi.p\|Nanoce1779_2\|42276:30071..34979 -
jgi.p\|Nanoce1779_2\|534572	polypeptide	jgi.p\|Nanoce1779_2\|534572:27939..28694 -
jgi.p\|Nanoce1779_2\|615928	polypeptide	jgi.p\|Nanoce1779_2\|615928:7926..10460 +
jgi.p\|Nanoce1779_2\|615934	polypeptide	jgi.p\|Nanoce1779_2\|615934:13992..14216 -
jgi.p\|Nanoce1779_2\|615938	polypeptide	jgi.p\|Nanoce1779_2\|615938:15082..16252 -
jgi.p\|Nanoce1779_2\|615941	polypeptide	jgi.p\|Nanoce1779_2\|615941:17116..18418 +
jgi.p\|Nanoce1779_2\|615945	polypeptide	jgi.p\|Nanoce1779_2\|615945:18753..19214 +
jgi.p\|Nanoce1779_2\|615959	polypeptide	jgi.p\|Nanoce1779_2\|615959:23560..24297 -
jgi.p\|Nanoce1779_2\|615977	polypeptide	jgi.p\|Nanoce1779_2\|615977:35603..37693 +
jgi.p\|Nanoce1779_2\|615980	polypeptide	jgi.p\|Nanoce1779_2\|615980:38534..40678 +
jgi.p\|Nanoce1779_2\|634687	polypeptide	jgi.p\|Nanoce1779_2\|634687:12272..13870 +
jgi.p\|Nanoce1779_2\|675458	polypeptide	jgi.p\|Nanoce1779_2\|675458:14..1547 -
ncniL080	syntenic_region	ncniL080:7811..40767 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications