jgi.p|Nanoce1779_2|615980, mRNA_11279 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|615980
Unique Name	mRNA_11279
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2529
Alignment location	scaffold_110:37984..40767 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	616066
Track	FilteredModels2
ProteinId	615980

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_110	supercontig	scaffold_110:37984..40767 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|615980	gene_11279	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|615980	mRNA_11279-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11279	CDS_11279	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_110:37984..40767+
coding sequence from alignment at scaffold_110:37984..40767+

mRNA sequence

>mRNA_11279 ID=mRNA_11279|Name=jgi.p|Nanoce1779_2|615980|organism=Nannochloropsis oceanica|type=mRNA|length=2529bp
CGAGGACTCCTTTATGTTTTCAACCTTGATACTTTCTATCTCAGTCCCGC
GAACGAGCTCTCATCTTATCATATTTTACTATAATAGTATTTTTGGTTGA
ACCAGCGTATATTCACCTGCATTCAGACAGCCTCCCCAGAGAAACTTTCT
ACGCCGCGCGTTGAATCCAACTGCTTGAACACTTTCAACGGCATTCGCCA
CGCCCTTTCCCTGTCGTCCAAACCACACCCAATAGCATACGATACATATT
CATGCTTGCACAGCAAGAAGCATAGCTTCCTCACATTTACCTTGCTTCTT
CTCTCATTCATTCCAAACCTCCGAGAAAGCGGGCTTCTACCTCCACCTGC
CTCCGACTAGAGCCACGGCCGCCTCGCACGCACTTATTCGTTGTCCTGTC
AATAACAATCCAGGCGACCCTCTCGTTTGACAAAAGCACACTCGCTCATT
CACTCCATTCACTTAATTATTCTCCTCTCAGCTCTTTTACAGACAGGGAA
GGGACGCGAACGCTTACCGCAAGATCTCCCGTCGTGATAGTAGCTAGACA
ATGCGGGCCCTCATCTCAAAGCTGGCACTATTGTGGACGCTGGCGCACCC
AGGACCCGCGTCAAGCATTGATCGCAGCGGCCCTAAGGACGAGGGCTACG
CCGTGGGCCAGGCAGTTGCGGAGGCCTTTAAAAGCAGCGGATATAATTTC
TCTTTCAATAAGATAGATACTGCTGACGAGCAGCAGATGCCTTTCCAAAA
AGAGGCCGAGCAGAGACAGAATGCCCAGGATAATGGGAATCATGAGCACG
ACAGCCGCACTAAGGGCGGCATCCGACGACAGCTGGGGATAACCCCGTTT
GGGTTACGACCCAGCACAATCGCGGATAAGAAGGAAGCATATAAGAAATT
CGCTGCCAAGCAGAATCTGGGGAGAGCTTCCAGCCTTCAGATGGCCGGAA
AGTGGAGTTCCAATAATGACGAGACACTGGATTTGAAAGCAGTGACGGAC
GGCAAGCTGATGCAGCCCAACTGCGCCTGGCAGGCCTTCATCACAGGCGG
TAATCACGCCAACATTAACGCAGCCTACCCAGACTCCCACTGCGTATATC
AGTTGCTGGTTATGACTAAGGTCACGGAGGATCGCATCTTCCGCGTCAAG
GCCAAGTTTCCCACCGGAGGCAATCGATACTTCTCGCTGCAGTCGAACAA
TCCCAACGTGGGATTCCCTCTGGCAACCATCCCGGACTTTAAGATCAAGC
CTGATCCTGGCGTGAACGCCAAAGGCAAGCCCTGGAAGAACCCATATATG
GCGGGCGAGGAAGTGCCGGACGACGAAGTGGGGTCCTACACCATTTACGT
GACGCCTCGCGGGGACAAGGGCTATCCGAACGAGATCAATTTGTGCACGA
AGGAAATGTCGGCCATAGAGTGCGGCACAACCAATGCTATCGTAGTCATG
CGATTTTACACCTCTAACCCCGACATGGGGATGCTGAACTCTGAGACGGA
CACGGGCGACAGCAATGAGCCCCGCCTCTTTGGCTATGCGGGCATGCCAG
TCGTAGAAGTACGCACGTGCAAGAATGGATGCATTGGCATGGCCGAGAAA
TGGAAGCCCTTTCGTCCCTGCGACCAGTCTCGGCCCACACCCCTCACTAA
GATGATCGAAGACAACTTTGCCAAGGTCATTCCAGGGTGGGGTACGCCCT
CCTACCCCGACGTCAACGACAACTTCATCATGTACATGGGTCTGGACTCT
AGCAGCAACGGCGTCTACCCTAACCTCGACGCAAATTATCTGGTTGCAAA
TACCTGGCAGGAGGCCGTTAAGGGTGCGCCGGGCGGTAATCCCATGCTTG
TAGCTCGAATTACGGGCAAGCTTCCCCTCACGGCATGGAACTTTCATCAC
GACCCTAAGACGCACGACTATGAGAATTATGAAGTACGCTACAACTCTTT
CTCTACAATTGGTAAGCTACAGACGGCCCCCACCATCCAATCCGTGGATG
ACTCCGAGATCCGCCGCTTCTACCGGGGCAAAATTACCGATTGGGAGACA
ACAAGGCCGTACAGCATCGTGGTCGGTCCTAGCAAGGGTACCACCTGCGG
CCTCTACAACGCCTCAAATGACCTCTTTCTGACTACCACAATGGCGGACG
GTAGCATCGCTGACAATTGGGCTGTCCTTGACCGGCAGTTGGTGCCCAGG
TATACGCGCGATGGTCAGCCCGACAAGTCGATCACATACACCCGCATAAC
TTGCTCGGCGATGTCGGATGAGCGCGCTTGCCACAACCCCTCCGTCCTCA
AACAGGTACTGGGCGAGTACTACCCTAGCATAACTTGGTATACTTGCGGC
GATGATGGTCAGCTCCGTCCCGCGTTCCCGCAGACTATGCTGGAGAAATA
CTTTGGTAAAAGGGAGGCGGGAAATGCGGAGGGGGGATGAAAAGGATATG
ATGATTAGGAGTGAACAAGCCAAAACATGCATTTAATAAAGCATTTGGAC
AAGCTTTCCAAGACTATGATCCCCACCTT

protein sequence of jgi.p|Nanoce1779_2|615980

>mRNA_11279-protein ID=mRNA_11279-protein|Name=jgi.p|Nanoce1779_2|615980|organism=Nannochloropsis oceanica|type=polypeptide|length=630bp
MRALISKLALLWTLAHPGPASSIDRSGPKDEGYAVGQAVAEAFKSSGYNF
SFNKIDTADEQQMPFQKEAEQRQNAQDNGNHEHDSRTKGGIRRQLGITPF
GLRPSTIADKKEAYKKFAAKQNLGRASSLQMAGKWSSNNDETLDLKAVTD
GKLMQPNCAWQAFITGGNHANINAAYPDSHCVYQLLVMTKVTEDRIFRVK
AKFPTGGNRYFSLQSNNPNVGFPLATIPDFKIKPDPGVNAKGKPWKNPYM
AGEEVPDDEVGSYTIYVTPRGDKGYPNEINLCTKEMSAIECGTTNAIVVM
RFYTSNPDMGMLNSETDTGDSNEPRLFGYAGMPVVEVRTCKNGCIGMAEK
WKPFRPCDQSRPTPLTKMIEDNFAKVIPGWGTPSYPDVNDNFIMYMGLDS
SSNGVYPNLDANYLVANTWQEAVKGAPGGNPMLVARITGKLPLTAWNFHH
DPKTHDYENYEVRYNSFSTIGKLQTAPTIQSVDDSEIRRFYRGKITDWET
TRPYSIVVGPSKGTTCGLYNASNDLFLTTTMADGSIADNWAVLDRQLVPR
YTRDGQPDKSITYTRITCSAMSDERACHNPSVLKQVLGEYYPSITWYTCG
DDGQLRPAFPQTMLEKYFGKREAGNAEGG*

mRNA from alignment at scaffold_110:37984..40767+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11279 ID=mRNA_11279|Name=jgi.p|Nanoce1779_2|615980|organism=Nannochloropsis oceanica|type=mRNA|length=2784bp|location=Sequence derived from alignment at scaffold_110:37984..40767+ (Nannochloropsis oceanica)
CGAGGACTCCTTTATGTTTTCAACCTTGATACTTTCTATCTCAGTCCCGC
GAACGAGCTCTCATCTTATCATATTTTACTATAATAGTATTTTTGGTTGA
ACCAGCGTATATTCACCTGCATTCAGACAGCCTCCCCAGAGAAACTTTCT
ACGCCGCGCGTTGAATCCAACTGCTTGAACACTTTCAACGGCATTCGCCA
CGCCCTTTCCCTGTCGTCCAAACCACACCCAATAGCATACGATACATATT
CATGCTTGCACAGCAAGAAGCATAGCTTCCTCACATTTACCTTGCTTCTT
CTCTCATTCATTCCAAACCTCCGAGAAAGCGGGCTTCTACCTCCACCTGC
CTCCGACTAGAGCCACGGCCGCCTCGCACGCACTTATTCGTTGTCCTGTC
AATAACAATCCAGGCGACCCTCTCGTTTGACAAAAGCACACTCGCTCATT
CACTCCATTCACTTAATTATTCTCCTCTCAGCTCTTTTACAGACAGGGAA
GGGACGCGAACGCTTACCGCAAGATCTCCCGTCGTGATAGTAGCTAGACA
ATGCGGGCCCTCATCTCAAAGCTGGCACTATTGTGGACGCTGGCGCACCC
AGGACCCGCGTCAAGGTAAAAATCTCAGTTAGAGAGACGTACTTTCGCAG
GAACACAGGCTGGTAGAGCTGTCAGCGCTAGGAGGAAGAAATGCATTCCA
TTGAGTGGACCAGATATCTATGTGATAGTTGGTTGGCTTTTCACGCCAGA
AGACCCCTGTTTAGCCTGTTATCATGCTCCTTCATTTCTACTAGGCGCCT
CGTGATTTCCGTGACCCTTTTATAATTGCTCATCCCCTCTTCCCCGTCCT
CTTCTCTCTCATCCACAAAGCATTGATCGCAGCGGCCCTAAGGACGAGGG
CTACGCCGTGGGCCAGGCAGTTGCGGAGGCCTTTAAAAGCAGCGGATATA
ATTTCTCTTTCAATAAGATAGATACTGCTGACGAGCAGCAGATGCCTTTC
CAAAAAGAGGCCGAGCAGAGACAGAATGCCCAGGATAATGGGAATCATGA
GCACGACAGCCGCACTAAGGGCGGCATCCGACGACAGCTGGGGATAACCC
CGTTTGGGTTACGACCCAGCACAATCGCGGATAAGAAGGAAGCATATAAG
AAATTCGCTGCCAAGCAGAATCTGGGGAGAGCTTCCAGCCTTCAGATGGC
CGGAAAGTGGAGTTCCAATAATGACGAGACACTGGATTTGAAAGCAGTGA
CGGACGGCAAGCTGATGCAGCCCAACTGCGCCTGGCAGGCCTTCATCACA
GGCGGTAATCACGCCAACATTAACGCAGCCTACCCAGACTCCCACTGCGT
ATATCAGTTGCTGGTTATGACTAAGGTCACGGAGGATCGCATCTTCCGCG
TCAAGGCCAAGTTTCCCACCGGAGGCAATCGATACTTCTCGCTGCAGTCG
AACAATCCCAACGTGGGATTCCCTCTGGCAACCATCCCGGACTTTAAGAT
CAAGCCTGATCCTGGCGTGAACGCCAAAGGCAAGCCCTGGAAGAACCCAT
ATATGGCGGGCGAGGAAGTGCCGGACGACGAAGTGGGGTCCTACACCATT
TACGTGACGCCTCGCGGGGACAAGGGCTATCCGAACGAGATCAATTTGTG
CACGAAGGAAATGTCGGCCATAGAGTGCGGCACAACCAATGCTATCGTAG
TCATGCGATTTTACACCTCTAACCCCGACATGGGGATGCTGAACTCTGAG
ACGGACACGGGCGACAGCAATGAGCCCCGCCTCTTTGGCTATGCGGGCAT
GCCAGTCGTAGAAGTACGCACGTGCAAGAATGGATGCATTGGCATGGCCG
AGAAATGGAAGCCCTTTCGTCCCTGCGACCAGTCTCGGCCCACACCCCTC
ACTAAGATGATCGAAGACAACTTTGCCAAGGTCATTCCAGGGTGGGGTAC
GCCCTCCTACCCCGACGTCAACGACAACTTCATCATGTACATGGGTCTGG
ACTCTAGCAGCAACGGCGTCTACCCTAACCTCGACGCAAATTATCTGGTT
GCAAATACCTGGCAGGAGGCCGTTAAGGGTGCGCCGGGCGGTAATCCCAT
GCTTGTAGCTCGAATTACGGGCAAGCTTCCCCTCACGGCATGGAACTTTC
ATCACGACCCTAAGACGCACGACTATGAGAATTATGAAGTACGCTACAAC
TCTTTCTCTACAATTGGTAAGCTACAGACGGCCCCCACCATCCAATCCGT
GGATGACTCCGAGATCCGCCGCTTCTACCGGGGCAAAATTACCGATTGGG
AGACAACAAGGCCGTACAGCATCGTGGTCGGTCCTAGCAAGGGTACCACC
TGCGGCCTCTACAACGCCTCAAATGACCTCTTTCTGACTACCACAATGGC
GGACGGTAGCATCGCTGACAATTGGGCTGTCCTTGACCGGCAGTTGGTGC
CCAGGTATACGCGCGATGGTCAGCCCGACAAGTCGATCACATACACCCGC
ATAACTTGCTCGGCGATGTCGGATGAGCGCGCTTGCCACAACCCCTCCGT
CCTCAAACAGGTACTGGGCGAGTACTACCCTAGCATAACTTGGTATACTT
GCGGCGATGATGGTCAGCTCCGTCCCGCGTTCCCGCAGACTATGCTGGAG
AAATACTTTGGTAAAAGGGAGGCGGGAAATGCGGAGGGGGGATGAAAAGG
ATATGATGATTAGGAGTGAACAAGCCAAAACATGCATTTAATAAAGCATT
TGGACAAGCTTTCCAAGACTATGATCCCCACCTT

Coding sequence (CDS) from alignment at scaffold_110:37984..40767+

>mRNA_11279 ID=mRNA_11279|Name=jgi.p|Nanoce1779_2|615980|organism=Nannochloropsis oceanica|type=CDS|length=3780bp|location=Sequence derived from alignment at scaffold_110:37984..40767+ (Nannochloropsis oceanica)
ATGCGGGCCCTCATCTCAAAGCTGGCACTATTGTGGACGCTGGCGCACCC
AGGACCCGCGTCAAGCATTGATCGCAGCGGCCCTAAGGACGAGGGCTACG
CCGTGGGCCAGGCAGTTGCGGAGGCCTTTAAAAGCAGCGGATATAATTTC
TCTTTCAATAAGATAGATACTGCTGACGAGCAGCAGATGCCTTTCCAAAA
AGAGGCCGAGCAGAGACAGAATGCCCAGGATAATGGGAATCATGAGCACG
ACAGCCGCACTAAGGGCGGCATCCGACGACAGCTGGGGATAACCCCGTTT
GGGTTACGACCCAGCACAATCGCGGATAAGAAGGAAGCATATAAGAAATT
CGCTGCCAAGCAGAATCTGGGGAGAGCTTCCAGCCTTCAGATGGCCGGAA
AGTGGAGTTCCAATAATGACGAGACACTGGATTTGAAAGCAGTGACGGAC
GGCAAGCTGATGCAGCCCAACTGCGCCTGGCAGGCCTTCATCACAGGCGG
TAATCACGCCAACATTAACGCAGCCTACCCAGACTCCCACTGCGTATATC
AGTTGCTGGTTATGACTAAGGTCACGGAGGATCGCATCTTCCGCGTCAAG
GCCAAGTTTCCCACCGGAGGCAATCGATACTTCTCGCTGCAGTCGAACAA
TCCCAACGTGGGATTCCCTCTGGCAACCATCCCGGACTTTAAGATCAAGC
CTGATCCTGGCGTGAACGCCAAAGGCAAGCCCTGGAAGAACCCATATATG
GCGGGCGAGGAAGTGCCGGACGACGAAGTGGGGTCCTACACCATTTACGT
GACGCCTCGCGGGGACAAGGGCTATCCGAACGAGATCAATTTGTGCACGA
AGGAAATGTCGGCCATAGAGTGCGGCACAACCAATGCTATCGTAGTCATG
CGATTTTACACCTCTAACCCCGACATGGGGATGCTGAACTCTGAGACGGA
CACGGGCGACAGCAATGAGCCCCGCCTCTTTGGCTATGCGGGCATGCCAG
TCGTAGAAGTACGCACGTGCAAGAATGGATGCATTGGCATGGCCGAGAAA
TGGAAGCCCTTTCGTCCCTGCGACCAGTCTCGGCCCACACCCCTCACTAA
GATGATCGAAGACAACTTTGCCAAGGTCATTCCAGGGTGGGGTACGCCCT
CCTACCCCGACGTCAACGACAACTTCATCATGTACATGGGTCTGGACTCT
AGCAGCAACGGCGTCTACCCTAACCTCGACGCAAATTATCTGGTTGCAAA
TACCTGGCAGGAGGCCGTTAAGGGTGCGCCGGGCGGTAATCCCATGCTTG
TAGCTCGAATTACGGGCAAGCTTCCCCTCACGGCATGGAACTTTCATCAC
GACCCTAAGACGCACGACTATGAGAATTATGAAGTACGCTACAACTCTTT
CTCTACAATTGGTAAGCTACAGACGGCCCCCACCATCCAATCCGTGGATG
ACTCCGAGATCCGCCGCTTCTACCGGGGCAAAATTACCGATTGGGAGACA
ACAAGGCCGTACAGCATCGTGGTCGGTCCTAGCAAGGGTACCACCTGCGG
CCTCTACAACGCCTCAAATGACCTCTTTCTGACTACCACAATGGCGGACG
GTAGCATCGCTGACAATTGGGCTGTCCTTGACCGGCAGTTGGTGCCCAGG
TATACGCGCGATGGTCAGCCCGACAAGTCGATCACATACACCCGCATAAC
TTGCTCGGCGATGTCGGATGAGCGCGCTTGCCACAACCCCTCCGTCCTCA
AACAGGTACTGGGCGAGTACTACCCTAGCATAACTTGGTATACTTGCGGC
GATGATGGTCAGCTCCGTCCCGCGTTCCCGCAGACTATGCTGGAGAAATA
CTTTGGTAAAAGGGAGGCGGGAAATGCGGAGGGGGGATGAATGCGGGCCC
TCATCTCAAAGCTGGCACTATTGTGGACGCTGGCGCACCCAGGACCCGCG
TCAAGCATTGATCGCAGCGGCCCTAAGGACGAGGGCTACGCCGTGGGCCA
GGCAGTTGCGGAGGCCTTTAAAAGCAGCGGATATAATTTCTCTTTCAATA
AGATAGATACTGCTGACGAGCAGCAGATGCCTTTCCAAAAAGAGGCCGAG
CAGAGACAGAATGCCCAGGATAATGGGAATCATGAGCACGACAGCCGCAC
TAAGGGCGGCATCCGACGACAGCTGGGGATAACCCCGTTTGGGTTACGAC
CCAGCACAATCGCGGATAAGAAGGAAGCATATAAGAAATTCGCTGCCAAG
CAGAATCTGGGGAGAGCTTCCAGCCTTCAGATGGCCGGAAAGTGGAGTTC
CAATAATGACGAGACACTGGATTTGAAAGCAGTGACGGACGGCAAGCTGA
TGCAGCCCAACTGCGCCTGGCAGGCCTTCATCACAGGCGGTAATCACGCC
AACATTAACGCAGCCTACCCAGACTCCCACTGCGTATATCAGTTGCTGGT
TATGACTAAGGTCACGGAGGATCGCATCTTCCGCGTCAAGGCCAAGTTTC
CCACCGGAGGCAATCGATACTTCTCGCTGCAGTCGAACAATCCCAACGTG
GGATTCCCTCTGGCAACCATCCCGGACTTTAAGATCAAGCCTGATCCTGG
CGTGAACGCCAAAGGCAAGCCCTGGAAGAACCCATATATGGCGGGCGAGG
AAGTGCCGGACGACGAAGTGGGGTCCTACACCATTTACGTGACGCCTCGC
GGGGACAAGGGCTATCCGAACGAGATCAATTTGTGCACGAAGGAAATGTC
GGCCATAGAGTGCGGCACAACCAATGCTATCGTAGTCATGCGATTTTACA
CCTCTAACCCCGACATGGGGATGCTGAACTCTGAGACGGACACGGGCGAC
AGCAATGAGCCCCGCCTCTTTGGCTATGCGGGCATGCCAGTCGTAGAAGT
ACGCACGTGCAAGAATGGATGCATTGGCATGGCCGAGAAATGGAAGCCCT
TTCGTCCCTGCGACCAGTCTCGGCCCACACCCCTCACTAAGATGATCGAA
GACAACTTTGCCAAGGTCATTCCAGGGTGGGGTACGCCCTCCTACCCCGA
CGTCAACGACAACTTCATCATGTACATGGGTCTGGACTCTAGCAGCAACG
GCGTCTACCCTAACCTCGACGCAAATTATCTGGTTGCAAATACCTGGCAG
GAGGCCGTTAAGGGTGCGCCGGGCGGTAATCCCATGCTTGTAGCTCGAAT
TACGGGCAAGCTTCCCCTCACGGCATGGAACTTTCATCACGACCCTAAGA
CGCACGACTATGAGAATTATGAAGTACGCTACAACTCTTTCTCTACAATT
GGTAAGCTACAGACGGCCCCCACCATCCAATCCGTGGATGACTCCGAGAT
CCGCCGCTTCTACCGGGGCAAAATTACCGATTGGGAGACAACAAGGCCGT
ACAGCATCGTGGTCGGTCCTAGCAAGGGTACCACCTGCGGCCTCTACAAC
GCCTCAAATGACCTCTTTCTGACTACCACAATGGCGGACGGTAGCATCGC
TGACAATTGGGCTGTCCTTGACCGGCAGTTGGTGCCCAGGTATACGCGCG
ATGGTCAGCCCGACAAGTCGATCACATACACCCGCATAACTTGCTCGGCG
ATGTCGGATGAGCGCGCTTGCCACAACCCCTCCGTCCTCAAACAGGTACT
GGGCGAGTACTACCCTAGCATAACTTGGTATACTTGCGGCGATGATGGTC
AGCTCCGTCCCGCGTTCCCGCAGACTATGCTGGAGAAATACTTTGGTAAA
AGGGAGGCGGGAAATGCGGAGGGGGGATGA

Synonyms

Publications