jgi.p|Nanoce1779_2|634687, mRNA_11269 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|634687
Unique Name	mRNA_11269
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2029
Alignment location	scaffold_110:12245..14387 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	634773
Track	FilteredModels2
ProteinId	634687

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_110	supercontig	scaffold_110:12245..14387 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634687	gene_11269	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634687	mRNA_11269-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11269	CDS_11269	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_110:12245..14387+
coding sequence from alignment at scaffold_110:12245..14387+

mRNA sequence

>mRNA_11269 ID=mRNA_11269|Name=jgi.p|Nanoce1779_2|634687|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp
CAGACTTGGCCAGTACAATAAAAAAAGATGAAGCTTTACAGCAAGCGCAC
GCTGACACTGGTGCTGCTTGCCCTCCTATGCGTGGCGCTCGCCGTGAGGG
CGCAGGACGTGCAGCAGGAGCAGGAGCACCAGCAGGAGGACGGAGCAGAG
GCCGCACAAGCGCTGGAGGCGTCGATTACCGACCACGAGCAGCAGCACAT
GGTAGACCAGCGAGCTACTGAACAGGAGGTGGCGGAGGAAGAACCAGCTA
CAGCCACGATGCAGGAGGAGATGAAAAAGGAAGAGAAGGAACCCGTTGCA
GCTGTGGAAAATGCGAAGGATGAAGAAAAGAAGGAGGAAGAATATGTCCC
TACCCAGCCGGAGGTCCAAAAGGAAAAGGAAGAACCCGTGGAAACTAAGG
TGGTGAAGGAGGAAGATTCGGTGCCCGTGGCTACGGAAGAAGAGAAGATC
AACGTGGCGGTCAACCATGGAACATATCCTGCTGATCCTATCGAGCTCCC
TGTGGCCGGTACGGAAACCGAGGGCGAGACTGCCGCGCCTAATGCTAAGA
AGTCTGAGGATGAAGTGTCCGAGAGTGAAGAGGATTGGACCACAGCCATC
GAAAAGGCCGTTGTGGAAGTAATCGAGCAGGAAGAAAAGGAGGCAGCAGC
GGGGTGGACGGGCTTGCGCGGGTCGAAACGTGTATACGATGGCAGCTACG
AGGAGGGAGAGGGAGTGGGAGGATCGCCCTTCTTCTTCCTCCCCAGCCTC
TTCTCTCCCTTCTTTTCCTCCTCCGCCGCACCTTTAATGGTTGAGGATGA
AAATGGCAATGGTGCTCTCCTCGTTCCTCCTCGTTCCTCCTCCTCCTCCT
TCTCCAATGGCTTCGCCGTCATGAACGACCTGGTCAATAACATCCTTTCT
TCGCTCCCCAGCCCTTCCTCCCTCCCTGCCCTCCCCTTTGGGGTGCCAAC
CCCTCCAGAAGGCTCAAGGGTGATTGTGGAGACCACACACGATGGCTCAA
CGGGCAAGACGACAGAAACCTTTTACGTGGTGGACTCCGAGAGTGGTGAA
AAGAAAATGGTGGGGGAGGAGGTGGAGGACGACGAGGAGGACGGGGGGCG
GGCATCGGTGTTTGGGGAAGGACAAGGCATCATGAAGAGCATTGTCAGTT
ACGTTGTGCGGGGTGGACCCCTTGTTCCTGCTGAAGAGAAAGGAATGCAA
CAGGAAGAGGACGCGGAGGGATCGAGCATTCGCTTGGAGGCAGCTGCTGC
TCCTGCGGCTGAGGTTGTCGCTCCTGCTTCAGGCAAGCAGCAGGAAGCGG
AAAAGAAGCAGCACCTACTGTTTGCCGTGTTGGGAGCGATGATGGGGGCT
GCCTTGGTGGTGCTTGCCATAGTGGGTGCCATGCTGCTCGTGCATCGACG
GGGAGAAGATAACGCGGTGGAGGGAGGCAGCCAGCAGCAACAGCAGCATC
AGGAGCCCTTGCTCTACGCTCCTCCGGAGGGAAGGGCGGAGGCCGGAGGG
ATGCAGGCATAAATGGAGGCTTGAATATATATGAAATGCGTATGGAGGGA
GGGAGGGAGGGGAGAAAGGGCAAGGGAGGAATGACGAGGCGGAGCCGGAA
GCAGACGCCGACACATGAATGGATGGAAAACCCTTAGAAATATTCATACG
GCCCTACATCTCTCCTCCTCCGTCTATTTGTATCAGATGAGATTCCTTGG
ATGCAACAGCCAGAAGCCAAGAATCGGAACACCAGGAGCGGAAAGCGTGA
GTTTCTTTCGATTTTTAAATTAAAGTACATTTGAATTGCCACCACAAATG
TAAAAACAAAGAAAGACGAAGGGGGGGAATCGATGAACAAAGAAGGAAGG
GCGGACATGGCAAGGAGGGGAGAAAAGAAAGAGGAGACAAGATACAAAAA
AAGAAATGATGCACCAAAAGCATCACAACGAATCAGTGACGACAAAAGCA
CCGACAGATGCGAGGGAGAGGAATTTGGAGAGATAGCATGAAAATGAAAA
CGAAAAAACGAATCGAAGAAATTGAGAAA

protein sequence of jgi.p|Nanoce1779_2|634687

>mRNA_11269-protein ID=mRNA_11269-protein|Name=jgi.p|Nanoce1779_2|634687|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MKLYSKRTLTLVLLALLCVALAVRAQDVQQEQEHQQEDGAEAAQALEASI
TDHEQQHMVDQRATEQEVAEEEPATATMQEEMKKEEKEPVAAVENAKDEE
KKEEEYVPTQPEVQKEKEEPVETKVVKEEDSVPVATEEEKINVAVNHGTY
PADPIELPVAGTETEGETAAPNAKKSEDEVSESEEDWTTAIEKAVVEVIE
QEEKEAAAGWTGLRGSKRVYDGSYEEGEGVGGSPFFFLPSLFSPFFSSSA
APLMVEDENGNGALLVPPRSSSSSFSNGFAVMNDLVNNILSSLPSPSSLP
ALPFGVPTPPEGSRVIVETTHDGSTGKTTETFYVVDSESGEKKMVGEEVE
DDEEDGGRASVFGEGQGIMKSIVSYVVRGGPLVPAEEKGMQQEEDAEGSS
IRLEAAAAPAAEVVAPASGKQQEAEKKQHLLFAVLGAMMGAALVVLAIVG
AMLLVHRRGEDNAVEGGSQQQQQHQEPLLYAPPEGRAEAGGMQA*

mRNA from alignment at scaffold_110:12245..14387+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11269 ID=mRNA_11269|Name=jgi.p|Nanoce1779_2|634687|organism=Nannochloropsis oceanica|type=mRNA|length=2143bp|location=Sequence derived from alignment at scaffold_110:12245..14387+ (Nannochloropsis oceanica)
CAGACTTGGCCAGTACAATAAAAAAAGATGAAGCTTTACAGCAAGCGCAC
GCTGACACTGGTGCTGCTTGCCCTCCTATGCGTGGCGCTCGCCGTGAGGG
CGCAGGACGTGCAGCAGGAGCAGGAGCACCAGCAGGAGGACGGAGCAGAG
GCCGCACAAGCGCTGGAGGCGTCGATTACCGACCACGAGCAGCAGCACAT
GGTAGACCAGCGAGCTACTGAACAGGAGGTGAGTGAGTGGGAAGAGCGGG
AAGGAAGTGCGACGGGAGATTTCAGGACTATGCGTGTGTTTCTGCTTCCG
GCGATCTGATTTCTTTTCCTTTCCGTTTGTGCCATCGCACAGGTGGCGGA
GGAAGAACCAGCTACAGCCACGATGCAGGAGGAGATGAAAAAGGAAGAGA
AGGAACCCGTTGCAGCTGTGGAAAATGCGAAGGATGAAGAAAAGAAGGAG
GAAGAATATGTCCCTACCCAGCCGGAGGTCCAAAAGGAAAAGGAAGAACC
CGTGGAAACTAAGGTGGTGAAGGAGGAAGATTCGGTGCCCGTGGCTACGG
AAGAAGAGAAGATCAACGTGGCGGTCAACCATGGAACATATCCTGCTGAT
CCTATCGAGCTCCCTGTGGCCGGTACGGAAACCGAGGGCGAGACTGCCGC
GCCTAATGCTAAGAAGTCTGAGGATGAAGTGTCCGAGAGTGAAGAGGATT
GGACCACAGCCATCGAAAAGGCCGTTGTGGAAGTAATCGAGCAGGAAGAA
AAGGAGGCAGCAGCGGGGTGGACGGGCTTGCGCGGGTCGAAACGTGTATA
CGATGGCAGCTACGAGGAGGGAGAGGGAGTGGGAGGATCGCCCTTCTTCT
TCCTCCCCAGCCTCTTCTCTCCCTTCTTTTCCTCCTCCGCCGCACCTTTA
ATGGTTGAGGATGAAAATGGCAATGGTGCTCTCCTCGTTCCTCCTCGTTC
CTCCTCCTCCTCCTTCTCCAATGGCTTCGCCGTCATGAACGACCTGGTCA
ATAACATCCTTTCTTCGCTCCCCAGCCCTTCCTCCCTCCCTGCCCTCCCC
TTTGGGGTGCCAACCCCTCCAGAAGGCTCAAGGGTGATTGTGGAGACCAC
ACACGATGGCTCAACGGGCAAGACGACAGAAACCTTTTACGTGGTGGACT
CCGAGAGTGGTGAAAAGAAAATGGTGGGGGAGGAGGTGGAGGACGACGAG
GAGGACGGGGGGCGGGCATCGGTGTTTGGGGAAGGACAAGGCATCATGAA
GAGCATTGTCAGTTACGTTGTGCGGGGTGGACCCCTTGTTCCTGCTGAAG
AGAAAGGAATGCAACAGGAAGAGGACGCGGAGGGATCGAGCATTCGCTTG
GAGGCAGCTGCTGCTCCTGCGGCTGAGGTTGTCGCTCCTGCTTCAGGCAA
GCAGCAGGAAGCGGAAAAGAAGCAGCACCTACTGTTTGCCGTGTTGGGAG
CGATGATGGGGGCTGCCTTGGTGGTGCTTGCCATAGTGGGTGCCATGCTG
CTCGTGCATCGACGGGGAGAAGATAACGCGGTGGAGGGAGGCAGCCAGCA
GCAACAGCAGCATCAGGAGCCCTTGCTCTACGCTCCTCCGGAGGGAAGGG
CGGAGGCCGGAGGGATGCAGGCATAAATGGAGGCTTGAATATATATGAAA
TGCGTATGGAGGGAGGGAGGGAGGGGAGAAAGGGCAAGGGAGGAATGACG
AGGCGGAGCCGGAAGCAGACGCCGACACATGAATGGATGGAAAACCCTTA
GAAATATTCATACGGCCCTACATCTCTCCTCCTCCGTCTATTTGTATCAG
ATGAGATTCCTTGGATGCAACAGCCAGAAGCCAAGAATCGGAACACCAGG
AGCGGAAAGCGTGAGTTTCTTTCGATTTTTAAATTAAAGTACATTTGAAT
TGCCACCACAAATGTAAAAACAAAGAAAGACGAAGGGGGGGAATCGATGA
ACAAAGAAGGAAGGGCGGACATGGCAAGGAGGGGAGAAAAGAAAGAGGAG
ACAAGATACAAAAAAAGAAATGATGCACCAAAAGCATCACAACGAATCAG
TGACGACAAAAGCACCGACAGATGCGAGGGAGAGGAATTTGGAGAGATAG
CATGAAAATGAAAACGAAAAAACGAATCGAAGAAATTGAGAAA

Coding sequence (CDS) from alignment at scaffold_110:12245..14387+

>mRNA_11269 ID=mRNA_11269|Name=jgi.p|Nanoce1779_2|634687|organism=Nannochloropsis oceanica|type=CDS|length=2970bp|location=Sequence derived from alignment at scaffold_110:12245..14387+ (Nannochloropsis oceanica)
ATGAAGCTTTACAGCAAGCGCACGCTGACACTGGTGCTGCTTGCCCTCCT
ATGCGTGGCGCTCGCCGTGAGGGCGCAGGACGTGCAGCAGGAGCAGGAGC
ACCAGCAGGAGGACGGAGCAGAGGCCGCACAAGCGCTGGAGGCGTCGATT
ACCGACCACGAGCAGCAGCACATGGTAGACCAGCGAGCTACTGAACAGGA
GGTGGCGGAGGAAGAACCAGCTACAGCCACGATGCAGGAGGAGATGAAAA
AGGAAGAGAAGGAACCCGTTGCAGCTGTGGAAAATGCGAAGGATGAAGAA
AAGAAGGAGGAAGAATATGTCCCTACCCAGCCGGAGGTCCAAAAGGAAAA
GGAAGAACCCGTGGAAACTAAGGTGGTGAAGGAGGAAGATTCGGTGCCCG
TGGCTACGGAAGAAGAGAAGATCAACGTGGCGGTCAACCATGGAACATAT
CCTGCTGATCCTATCGAGCTCCCTGTGGCCGGTACGGAAACCGAGGGCGA
GACTGCCGCGCCTAATGCTAAGAAGTCTGAGGATGAAGTGTCCGAGAGTG
AAGAGGATTGGACCACAGCCATCGAAAAGGCCGTTGTGGAAGTAATCGAG
CAGGAAGAAAAGGAGGCAGCAGCGGGGTGGACGGGCTTGCGCGGGTCGAA
ACGTGTATACGATGGCAGCTACGAGGAGGGAGAGGGAGTGGGAGGATCGC
CCTTCTTCTTCCTCCCCAGCCTCTTCTCTCCCTTCTTTTCCTCCTCCGCC
GCACCTTTAATGGTTGAGGATGAAAATGGCAATGGTGCTCTCCTCGTTCC
TCCTCGTTCCTCCTCCTCCTCCTTCTCCAATGGCTTCGCCGTCATGAACG
ACCTGGTCAATAACATCCTTTCTTCGCTCCCCAGCCCTTCCTCCCTCCCT
GCCCTCCCCTTTGGGGTGCCAACCCCTCCAGAAGGCTCAAGGGTGATTGT
GGAGACCACACACGATGGCTCAACGGGCAAGACGACAGAAACCTTTTACG
TGGTGGACTCCGAGAGTGGTGAAAAGAAAATGGTGGGGGAGGAGGTGGAG
GACGACGAGGAGGACGGGGGGCGGGCATCGGTGTTTGGGGAAGGACAAGG
CATCATGAAGAGCATTGTCAGTTACGTTGTGCGGGGTGGACCCCTTGTTC
CTGCTGAAGAGAAAGGAATGCAACAGGAAGAGGACGCGGAGGGATCGAGC
ATTCGCTTGGAGGCAGCTGCTGCTCCTGCGGCTGAGGTTGTCGCTCCTGC
TTCAGGCAAGCAGCAGGAAGCGGAAAAGAAGCAGCACCTACTGTTTGCCG
TGTTGGGAGCGATGATGGGGGCTGCCTTGGTGGTGCTTGCCATAGTGGGT
GCCATGCTGCTCGTGCATCGACGGGGAGAAGATAACGCGGTGGAGGGAGG
CAGCCAGCAGCAACAGCAGCATCAGGAGCCCTTGCTCTACGCTCCTCCGG
AGGGAAGGGCGGAGGCCGGAGGGATGCAGGCATAAATGAAGCTTTACAGC
AAGCGCACGCTGACACTGGTGCTGCTTGCCCTCCTATGCGTGGCGCTCGC
CGTGAGGGCGCAGGACGTGCAGCAGGAGCAGGAGCACCAGCAGGAGGACG
GAGCAGAGGCCGCACAAGCGCTGGAGGCGTCGATTACCGACCACGAGCAG
CAGCACATGGTAGACCAGCGAGCTACTGAACAGGAGGTGGCGGAGGAAGA
ACCAGCTACAGCCACGATGCAGGAGGAGATGAAAAAGGAAGAGAAGGAAC
CCGTTGCAGCTGTGGAAAATGCGAAGGATGAAGAAAAGAAGGAGGAAGAA
TATGTCCCTACCCAGCCGGAGGTCCAAAAGGAAAAGGAAGAACCCGTGGA
AACTAAGGTGGTGAAGGAGGAAGATTCGGTGCCCGTGGCTACGGAAGAAG
AGAAGATCAACGTGGCGGTCAACCATGGAACATATCCTGCTGATCCTATC
GAGCTCCCTGTGGCCGGTACGGAAACCGAGGGCGAGACTGCCGCGCCTAA
TGCTAAGAAGTCTGAGGATGAAGTGTCCGAGAGTGAAGAGGATTGGACCA
CAGCCATCGAAAAGGCCGTTGTGGAAGTAATCGAGCAGGAAGAAAAGGAG
GCAGCAGCGGGGTGGACGGGCTTGCGCGGGTCGAAACGTGTATACGATGG
CAGCTACGAGGAGGGAGAGGGAGTGGGAGGATCGCCCTTCTTCTTCCTCC
CCAGCCTCTTCTCTCCCTTCTTTTCCTCCTCCGCCGCACCTTTAATGGTT
GAGGATGAAAATGGCAATGGTGCTCTCCTCGTTCCTCCTCGTTCCTCCTC
CTCCTCCTTCTCCAATGGCTTCGCCGTCATGAACGACCTGGTCAATAACA
TCCTTTCTTCGCTCCCCAGCCCTTCCTCCCTCCCTGCCCTCCCCTTTGGG
GTGCCAACCCCTCCAGAAGGCTCAAGGGTGATTGTGGAGACCACACACGA
TGGCTCAACGGGCAAGACGACAGAAACCTTTTACGTGGTGGACTCCGAGA
GTGGTGAAAAGAAAATGGTGGGGGAGGAGGTGGAGGACGACGAGGAGGAC
GGGGGGCGGGCATCGGTGTTTGGGGAAGGACAAGGCATCATGAAGAGCAT
TGTCAGTTACGTTGTGCGGGGTGGACCCCTTGTTCCTGCTGAAGAGAAAG
GAATGCAACAGGAAGAGGACGCGGAGGGATCGAGCATTCGCTTGGAGGCA
GCTGCTGCTCCTGCGGCTGAGGTTGTCGCTCCTGCTTCAGGCAAGCAGCA
GGAAGCGGAAAAGAAGCAGCACCTACTGTTTGCCGTGTTGGGAGCGATGA
TGGGGGCTGCCTTGGTGGTGCTTGCCATAGTGGGTGCCATGCTGCTCGTG
CATCGACGGGGAGAAGATAACGCGGTGGAGGGAGGCAGCCAGCAGCAACA
GCAGCATCAGGAGCCCTTGCTCTACGCTCCTCCGGAGGGAAGGGCGGAGG
CCGGAGGGATGCAGGCATAA

Synonyms

Publications