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Properties
| Property Name | Value |
|---|
| TranscriptId | 616045 |
| Track | FilteredModels2 |
| ProteinId | 615959 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_110 | supercontig | scaffold_110:22868..24465 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11275 ID=mRNA_11275|Name=jgi.p|Nanoce1779_2|615959|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp
AATGACTGGAATCAGCAGCAGCAGACCCAGCAGAAAGAGAATGACTGGCA
AAATCAGAAGGCGAATGGAGATGCCTGGAAAGCAAATGATAGCCTTAATG
ATCTAGTGAAGCTTACCCCAGATGGCCGCGTCACGCTGAGCATTCCCGAG
GCCGCACGTGCCTACGCCATGGCAAGCGTGGCGGCTATGGACACGCGCGT
AGCTGCCTTTGATAACACGTACTTTTACAATACCTGGCGCCCCATCACGG
CCATTCGCACTGGGAATGAAGGACAAGACATGGAGGCATCGAGCAACTGG
GAACCTTTTCGGGTCACGCCCGCGACACCCGAGTACCCGAACGGCCATGC
CAGCTTGGGGGGGGCCATGGCTGAGGTTTTGGCAGAGGTTGCGAACAGCG
GTAAGGACGAAGCGCCTTTCCCTTTGGTCCTGACAGCGCCTGATGGCCAG
CGACGTACGTACCACTCCATGTCCCAGATTGCGGACGATTGCGCAGTGTC
GCGCGTGTATTGGGGTGGCCACTGGCGGCACACTACTTCACCTTCCATAG
CACTTGGCAAGCAGGTAGGTCAGACCGTAATTAAGCAATTCGACGATAAG
TACGAGGCAACCACTGCCGCCGAGACCCTCAAGCAGCAGCAGCAGCAGGC
AGCCGCTGGCCAAGAAATCTTGACGAGTTCTGGGGATGCGCAGGTTAGAG
TACAGCCTAAGATGCAGGGCCAGGAGCATGTTGGCGTGTTGAGCCAGCAG
GTAGAGCCTATGACAAAGCAACCAGACACACTGCCTAACGTACAGCAGCC
GATCATGGAACAGGACACTGTTGCCGAGCAGCCGCATGAGACACCGGAGC
AAGCTCGTCGTCGCCGTAAACGGGAGAGGGAGGGAAAGCGATTTTTGCGT
GCATAAAACAAGATCAGAAAGAATGAAAAAAATAAAAATGAAGAACATGA
AAAAGAGAAAGGGAGGGAGGATTGCAAACAAGGAATGGCAGACGAAAGAG
GAGGGAAGAATAACTGTGGAATAATTGAAAAGTGAGAGTCCAGTGCAAAG
TACCTACAGAGATATCTCGACAAAGAGGGATAGGAGAAAAACTGAACAGT
TCGTCCGTGAGAAGCCGTGTCAATGGCAGTGCAAGCAGCAGTAGCAGCGA
AAGCCAGCAGCGAGAACTTCGTATACATATAATACGTCAAACGTGTTCAA
ATAGAAAGCGGACGGAAAAGATACATCGAACCCTGAGGGAGCCCAGAAAA
TATCACCAACAGCAGTAGCAGAATCAGCAGCGAAATCAGGAGCAGCCAAT
GGACGTCGTTGTGACTGTCATTTCTCCTTATACGTGCCTGTTAGGTGACT
GATTTGAGTTATTTACTTATCCAATTACAATGTTCAAACGAAAAGCGAAG
TCTATGTAACGTGTCAGCCCTGTATCTAAGCAAAGTGTCACAGGAGCTCT
GGACTCACTATTTTTTGATTGATGGATATTGAGACTTGCCCAGAACAGAT
GAGGAGAGACAAAGAAAGATGGGAAAAAAGAGAAATCCTGAGTTAAAGTT
AAGAGGACGACGAACGATTTATCAAGGAAATTTCATCAGTTTGCTTTA back to topprotein sequence of jgi.p|Nanoce1779_2|615959 >mRNA_11275-protein ID=mRNA_11275-protein|Name=jgi.p|Nanoce1779_2|615959|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MASVAAMDTRVAAFDNTYFYNTWRPITAIRTGNEGQDMEASSNWEPFRVT
PATPEYPNGHASLGGAMAEVLAEVANSGKDEAPFPLVLTAPDGQRRTYHS
MSQIADDCAVSRVYWGGHWRHTTSPSIALGKQVGQTVIKQFDDKYEATTA
AETLKQQQQQAAAGQEILTSSGDAQVRVQPKMQGQEHVGVLSQQVEPMTK
QPDTLPNVQQPIMEQDTVAEQPHETPEQARRRRKREREGKRFLRA* back to topmRNA from alignment at scaffold_110:22868..24465- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11275 ID=mRNA_11275|Name=jgi.p|Nanoce1779_2|615959|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp|location=Sequence derived from alignment at scaffold_110:22868..24465- (Nannochloropsis oceanica)
AATGACTGGAATCAGCAGCAGCAGACCCAGCAGAAAGAGAATGACTGGCA
AAATCAGAAGGCGAATGGAGATGCCTGGAAAGCAAATGATAGCCTTAATG
ATCTAGTGAAGCTTACCCCAGATGGCCGCGTCACGCTGAGCATTCCCGAG
GCCGCACGTGCCTACGCCATGGCAAGCGTGGCGGCTATGGACACGCGCGT
AGCTGCCTTTGATAACACGTACTTTTACAATACCTGGCGCCCCATCACGG
CCATTCGCACTGGGAATGAAGGACAAGACATGGAGGCATCGAGCAACTGG
GAACCTTTTCGGGTCACGCCCGCGACACCCGAGTACCCGAACGGCCATGC
CAGCTTGGGGGGGGCCATGGCTGAGGTTTTGGCAGAGGTTGCGAACAGCG
GTAAGGACGAAGCGCCTTTCCCTTTGGTCCTGACAGCGCCTGATGGCCAG
CGACGTACGTACCACTCCATGTCCCAGATTGCGGACGATTGCGCAGTGTC
GCGCGTGTATTGGGGTGGCCACTGGCGGCACACTACTTCACCTTCCATAG
CACTTGGCAAGCAGGTAGGTCAGACCGTAATTAAGCAATTCGACGATAAG
TACGAGGCAACCACTGCCGCCGAGACCCTCAAGCAGCAGCAGCAGCAGGC
AGCCGCTGGCCAAGAAATCTTGACGAGTTCTGGGGATGCGCAGGTTAGAG
TACAGCCTAAGATGCAGGGCCAGGAGCATGTTGGCGTGTTGAGCCAGCAG
GTAGAGCCTATGACAAAGCAACCAGACACACTGCCTAACGTACAGCAGCC
GATCATGGAACAGGACACTGTTGCCGAGCAGCCGCATGAGACACCGGAGC
AAGCTCGTCGTCGCCGTAAACGGGAGAGGGAGGGAAAGCGATTTTTGCGT
GCATAAAACAAGATCAGAAAGAATGAAAAAAATAAAAATGAAGAACATGA
AAAAGAGAAAGGGAGGGAGGATTGCAAACAAGGAATGGCAGACGAAAGAG
GAGGGAAGAATAACTGTGGAATAATTGAAAAGTGAGAGTCCAGTGCAAAG
TACCTACAGAGATATCTCGACAAAGAGGGATAGGAGAAAAACTGAACAGT
TCGTCCGTGAGAAGCCGTGTCAATGGCAGTGCAAGCAGCAGTAGCAGCGA
AAGCCAGCAGCGAGAACTTCGTATACATATAATACGTCAAACGTGTTCAA
ATAGAAAGCGGACGGAAAAGATACATCGAACCCTGAGGGAGCCCAGAAAA
TATCACCAACAGCAGTAGCAGAATCAGCAGCGAAATCAGGAGCAGCCAAT
GGACGTCGTTGTGACTGTCATTTCTCCTTATACGTGCCTGTTAGGTGACT
GATTTGAGTTATTTACTTATCCAATTACAATGTTCAAACGAAAAGCGAAG
TCTATGTAACGTGTCAGCCCTGTATCTAAGCAAAGTGTCACAGGAGCTCT
GGACTCACTATTTTTTGATTGATGGATATTGAGACTTGCCCAGAACAGAT
GAGGAGAGACAAAGAAAGATGGGAAAAAAGAGAAATCCTGAGTTAAAGTT
AAGAGGACGACGAACGATTTATCAAGGAAATTTCATCAGTTTGCTTTA back to topCoding sequence (CDS) from alignment at scaffold_110:22868..24465- >mRNA_11275 ID=mRNA_11275|Name=jgi.p|Nanoce1779_2|615959|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_110:22868..24465- (Nannochloropsis oceanica)
ATGGCAAGCGTGGCGGCTATGGACACGCGCGTAGCTGCCTTTGATAACAC
GTACTTTTACAATACCTGGCGCCCCATCACGGCCATTCGCACTGGGAATG
AAGGACAAGACATGGAGGCATCGAGCAACTGGGAACCTTTTCGGGTCACG
CCCGCGACACCCGAGTACCCGAACGGCCATGCCAGCTTGGGGGGGGCCAT
GGCTGAGGTTTTGGCAGAGGTTGCGAACAGCGGTAAGGACGAAGCGCCTT
TCCCTTTGGTCCTGACAGCGCCTGATGGCCAGCGACGTACGTACCACTCC
ATGTCCCAGATTGCGGACGATTGCGCAGTGTCGCGCGTGTATTGGGGTGG
CCACTGGCGGCACACTACTTCACCTTCCATAGCACTTGGCAAGCAGGTAG
GTCAGACCGTAATTAAGCAATTCGACGATAAGTACGAGGCAACCACTGCC
GCCGAGACCCTCAAGCAGCAGCAGCAGCAGGCAGCCGCTGGCCAAGAAAT
CTTGACGAGTTCTGGGGATGCGCAGGTTAGAGTACAGCCTAAGATGCAGG
GCCAGGAGCATGTTGGCGTGTTGAGCCAGCAGGTAGAGCCTATGACAAAG
CAACCAGACACACTGCCTAACGTACAGCAGCCGATCATGGAACAGGACAC
TGTTGCCGAGCAGCCGCATGAGACACCGGAGCAAGCTCGTCGTCGCCGTA
AACGGGAGAGGGAGGGAAAGCGATTTTTGCGTGCATAA back to top
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