jgi.p|Nanoce1779_2|615977, mRNA_11278 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|615977
Unique Name	mRNA_11278
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2218
Alignment location	scaffold_110:35567..37784 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	616063
Track	FilteredModels2
ProteinId	615977

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_110	supercontig	scaffold_110:35567..37784 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|615977	gene_11278	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|615977	mRNA_11278-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11278	CDS_11278	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_110:35567..37784+
coding sequence from alignment at scaffold_110:35567..37784+

mRNA sequence

>mRNA_11278 ID=mRNA_11278|Name=jgi.p|Nanoce1779_2|615977|organism=Nannochloropsis oceanica|type=mRNA|length=2218bp
ACAGATCACTGCGACAAACCAATCATCAACCAAGCCATGGCGGCGGACGA
TGCCCAAGACAATGTGAACGGTGCAACAATCATTGAGGATTCTGGCAAGA
CGCCTCCTCCTCCCCTGAACTTGCGACTCCACCACATGCTCCGCTCCCTT
CAACTCCAGCACGGCCTTAGACACGGTGACTACCAACGCTACCGCCACTA
CGTCACGCGCCGCCTCGCCCGCCTCCGCAAGGCGGGGAAGGCTACGCACA
AGGGCGGCAAGGCCTTTGCAACCAAGGACGTGCACACCCTGGCGAGCGTG
GGTGGCGACCCGGCGGCTGTAAAGATCGAGCACCTGCTGCTATTGCTCCT
GAACGCGGAACGGGCCTGGGCATTTGCGATGCAGGTCAAGCAAGACGCGG
CCAGCAACCAGCACATGCCCAGCTACCAGCGTGCCCATCTATTGCGCCGC
CTCCGCCGGGCAGCTGTGTGGGCCACGCGCTTGCAGGGCTTAGTAGGGGA
GGCGAGCGGGCATGTCACCAAACGAACGTCATTGGAAGTGGCGGCTTACG
CGGGCTGGATGGCGGCGGGCGTGGACGTGGAACAGGAGCAGTGGGAAGCG
GCTCTGGGTAAGCTGCGTACGGCGCACTCGATCCTGAGCCAGCTAGGGGA
GGTGGGGTCGGCGGAGGAGCAGGATTTGTTCTCGAGTAAGGCGGAGGAAG
TGATGCAGTCGGCCCGCTTTTGCCAATACAATTTAGGGGAGGGCTCGCTT
GAGGACCTGCAGCAGGTGCAGAGAGAATACGTCCCGCAAGGGCTGAGGGA
GAAGCTGGAGGCGGTGATGGAGGCCTCACGGACCGAGGCGGCCACTGGCT
TGGAGACCGTGGAGTGGGGCGGCCGGCACGTGCCTGTTTCGAGCGCCGAG
GTGCGGGTTGCCTTGGTGAAAGTAATTGAAGCTCGCAAGCGTCTATATAC
CTCCAAAGAGAACGAAGAGGTGGGACAGCAGCAGAAGCAGGAGCAGGAGA
GCCAAAGGGAGGAAGCATACTCGAGTGTGTACGCAGCCTACGATGAGGCC
TTGAAGCGGGTAGCAGCGGCGGCGGACAAGGTCGAGGGCATGAGCCATGG
TGCCCGTGTGGACGCCCACAAGGAAGAGCTCAAACTGCTGGCTAGCTACC
TGCGGCACGGAAAGCTCGAGACCATGCGCCTGCGGAAGGAGGTGTTGGTT
CAGAGCTTGCTGCGAGGCAGCAATGCGGGCGGGAAACGGGAGGGGAGAGG
GAGGCCGGAGGACCTGGTGCACGTGTTGGACGCCTTGATGCAGAACGTGG
TTGAGGTTCAGGCCTTGCCAGGTGTAGAAGAGCTCGAGCCCGTCTTGACG
CAAGCGCAGGCCCTCGAAGCTCGCTACCGGGCCCAGCGTGCATTTTACCT
GGCAGAGTGCTATGCAGGGGAGAAGAAGCTGGCCGAGGCCATAGCCCTCT
TCGCGAAGGCGGAGACTCTGGGGGAAATGGCGGTTAGTCTGGCGAAAGAG
GTGGTGGGGAAGGAGCAGAAGGAGGGCATGCTTAAGGAGGCCCGAGAGGT
GAAAGTAATGGCGGCGGGGGGTAGATGCCGAACTCAAGCCTTGGCTCTGC
TGGCTTCCTTGTCCCCGGCTGCTGCCAGTGGGGCGGTGAGTGAGGAGGCG
GCCTTGACGGTTGCACTCTCGGCGCTTTCGCTCTCGGCCGCAACTGCTGC
GCGAGCGGAAGATGGAGCGGAAAAAAGAAGCAAAGGAATGAAGATGCAGC
AGCAGCAGAAGAAGGGCAAGGATACGCGGTCGCCGCAGCAGTCGGGCACG
AGCACGGCAAAAGCAATGTCAGGCGCGTCATCGAGGGGCCCAAAAGCAGG
CACTGACTTTGAACCGGCGTCACGGACCTTGCTGGAACGGTTGGGGGAGA
TCGATGGCGGCAAGGAGATCAGTGGATTTGGTATCGCGCGCATGCCACCC
ACGGTGATGCCGGTACGGGCCAAGCCCCAGCTTTTCGATATGGCCTTCAA
CTTTCTGGAAGGACGCTTGCCAGACCTAGCTATCAAAGCGGGTCTGCCCC
CGAACAAGAGGGCAGGCCCACGGGGGGGAGAAGGTTCGTCCGGAGTTGGA
GGGTTGTTTGGGTGGTTGAGAGGATAGTCGGCTTGGCTTATTTCGGGGCC
TAAAGAAAGTGTGAAGAGGGGAAAGCAAGGATAGACAAGGAAGGAAAGAA
AAAACATTTGGGAAAGAA

protein sequence of jgi.p|Nanoce1779_2|615977

>mRNA_11278-protein ID=mRNA_11278-protein|Name=jgi.p|Nanoce1779_2|615977|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MAADDAQDNVNGATIIEDSGKTPPPPLNLRLHHMLRSLQLQHGLRHGDYQ
RYRHYVTRRLARLRKAGKATHKGGKAFATKDVHTLASVGGDPAAVKIEHL
LLLLLNAERAWAFAMQVKQDAASNQHMPSYQRAHLLRRLRRAAVWATRLQ
GLVGEASGHVTKRTSLEVAAYAGWMAAGVDVEQEQWEAALGKLRTAHSIL
SQLGEVGSAEEQDLFSSKAEEVMQSARFCQYNLGEGSLEDLQQVQREYVP
QGLREKLEAVMEASRTEAATGLETVEWGGRHVPVSSAEVRVALVKVIEAR
KRLYTSKENEEVGQQQKQEQESQREEAYSSVYAAYDEALKRVAAAADKVE
GMSHGARVDAHKEELKLLASYLRHGKLETMRLRKEVLVQSLLRGSNAGGK
REGRGRPEDLVHVLDALMQNVVEVQALPGVEELEPVLTQAQALEARYRAQ
RAFYLAECYAGEKKLAEAIALFAKAETLGEMAVSLAKEVVGKEQKEGMLK
EAREVKVMAAGGRCRTQALALLASLSPAAASGAVSEEAALTVALSALSLS
AATAARAEDGAEKRSKGMKMQQQQKKGKDTRSPQQSGTSTAKAMSGASSR
GPKAGTDFEPASRTLLERLGEIDGGKEISGFGIARMPPTVMPVRAKPQLF
DMAFNFLEGRLPDLAIKAGLPPNKRAGPRGGEGSSGVGGLFGWLRG*

mRNA from alignment at scaffold_110:35567..37784+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11278 ID=mRNA_11278|Name=jgi.p|Nanoce1779_2|615977|organism=Nannochloropsis oceanica|type=mRNA|length=2218bp|location=Sequence derived from alignment at scaffold_110:35567..37784+ (Nannochloropsis oceanica)
ACAGATCACTGCGACAAACCAATCATCAACCAAGCCATGGCGGCGGACGA
TGCCCAAGACAATGTGAACGGTGCAACAATCATTGAGGATTCTGGCAAGA
CGCCTCCTCCTCCCCTGAACTTGCGACTCCACCACATGCTCCGCTCCCTT
CAACTCCAGCACGGCCTTAGACACGGTGACTACCAACGCTACCGCCACTA
CGTCACGCGCCGCCTCGCCCGCCTCCGCAAGGCGGGGAAGGCTACGCACA
AGGGCGGCAAGGCCTTTGCAACCAAGGACGTGCACACCCTGGCGAGCGTG
GGTGGCGACCCGGCGGCTGTAAAGATCGAGCACCTGCTGCTATTGCTCCT
GAACGCGGAACGGGCCTGGGCATTTGCGATGCAGGTCAAGCAAGACGCGG
CCAGCAACCAGCACATGCCCAGCTACCAGCGTGCCCATCTATTGCGCCGC
CTCCGCCGGGCAGCTGTGTGGGCCACGCGCTTGCAGGGCTTAGTAGGGGA
GGCGAGCGGGCATGTCACCAAACGAACGTCATTGGAAGTGGCGGCTTACG
CGGGCTGGATGGCGGCGGGCGTGGACGTGGAACAGGAGCAGTGGGAAGCG
GCTCTGGGTAAGCTGCGTACGGCGCACTCGATCCTGAGCCAGCTAGGGGA
GGTGGGGTCGGCGGAGGAGCAGGATTTGTTCTCGAGTAAGGCGGAGGAAG
TGATGCAGTCGGCCCGCTTTTGCCAATACAATTTAGGGGAGGGCTCGCTT
GAGGACCTGCAGCAGGTGCAGAGAGAATACGTCCCGCAAGGGCTGAGGGA
GAAGCTGGAGGCGGTGATGGAGGCCTCACGGACCGAGGCGGCCACTGGCT
TGGAGACCGTGGAGTGGGGCGGCCGGCACGTGCCTGTTTCGAGCGCCGAG
GTGCGGGTTGCCTTGGTGAAAGTAATTGAAGCTCGCAAGCGTCTATATAC
CTCCAAAGAGAACGAAGAGGTGGGACAGCAGCAGAAGCAGGAGCAGGAGA
GCCAAAGGGAGGAAGCATACTCGAGTGTGTACGCAGCCTACGATGAGGCC
TTGAAGCGGGTAGCAGCGGCGGCGGACAAGGTCGAGGGCATGAGCCATGG
TGCCCGTGTGGACGCCCACAAGGAAGAGCTCAAACTGCTGGCTAGCTACC
TGCGGCACGGAAAGCTCGAGACCATGCGCCTGCGGAAGGAGGTGTTGGTT
CAGAGCTTGCTGCGAGGCAGCAATGCGGGCGGGAAACGGGAGGGGAGAGG
GAGGCCGGAGGACCTGGTGCACGTGTTGGACGCCTTGATGCAGAACGTGG
TTGAGGTTCAGGCCTTGCCAGGTGTAGAAGAGCTCGAGCCCGTCTTGACG
CAAGCGCAGGCCCTCGAAGCTCGCTACCGGGCCCAGCGTGCATTTTACCT
GGCAGAGTGCTATGCAGGGGAGAAGAAGCTGGCCGAGGCCATAGCCCTCT
TCGCGAAGGCGGAGACTCTGGGGGAAATGGCGGTTAGTCTGGCGAAAGAG
GTGGTGGGGAAGGAGCAGAAGGAGGGCATGCTTAAGGAGGCCCGAGAGGT
GAAAGTAATGGCGGCGGGGGGTAGATGCCGAACTCAAGCCTTGGCTCTGC
TGGCTTCCTTGTCCCCGGCTGCTGCCAGTGGGGCGGTGAGTGAGGAGGCG
GCCTTGACGGTTGCACTCTCGGCGCTTTCGCTCTCGGCCGCAACTGCTGC
GCGAGCGGAAGATGGAGCGGAAAAAAGAAGCAAAGGAATGAAGATGCAGC
AGCAGCAGAAGAAGGGCAAGGATACGCGGTCGCCGCAGCAGTCGGGCACG
AGCACGGCAAAAGCAATGTCAGGCGCGTCATCGAGGGGCCCAAAAGCAGG
CACTGACTTTGAACCGGCGTCACGGACCTTGCTGGAACGGTTGGGGGAGA
TCGATGGCGGCAAGGAGATCAGTGGATTTGGTATCGCGCGCATGCCACCC
ACGGTGATGCCGGTACGGGCCAAGCCCCAGCTTTTCGATATGGCCTTCAA
CTTTCTGGAAGGACGCTTGCCAGACCTAGCTATCAAAGCGGGTCTGCCCC
CGAACAAGAGGGCAGGCCCACGGGGGGGAGAAGGTTCGTCCGGAGTTGGA
GGGTTGTTTGGGTGGTTGAGAGGATAGTCGGCTTGGCTTATTTCGGGGCC
TAAAGAAAGTGTGAAGAGGGGAAAGCAAGGATAGACAAGGAAGGAAAGAA
AAAACATTTGGGAAAGAA

Coding sequence (CDS) from alignment at scaffold_110:35567..37784+

>mRNA_11278 ID=mRNA_11278|Name=jgi.p|Nanoce1779_2|615977|organism=Nannochloropsis oceanica|type=CDS|length=2091bp|location=Sequence derived from alignment at scaffold_110:35567..37784+ (Nannochloropsis oceanica)
ATGGCGGCGGACGATGCCCAAGACAATGTGAACGGTGCAACAATCATTGA
GGATTCTGGCAAGACGCCTCCTCCTCCCCTGAACTTGCGACTCCACCACA
TGCTCCGCTCCCTTCAACTCCAGCACGGCCTTAGACACGGTGACTACCAA
CGCTACCGCCACTACGTCACGCGCCGCCTCGCCCGCCTCCGCAAGGCGGG
GAAGGCTACGCACAAGGGCGGCAAGGCCTTTGCAACCAAGGACGTGCACA
CCCTGGCGAGCGTGGGTGGCGACCCGGCGGCTGTAAAGATCGAGCACCTG
CTGCTATTGCTCCTGAACGCGGAACGGGCCTGGGCATTTGCGATGCAGGT
CAAGCAAGACGCGGCCAGCAACCAGCACATGCCCAGCTACCAGCGTGCCC
ATCTATTGCGCCGCCTCCGCCGGGCAGCTGTGTGGGCCACGCGCTTGCAG
GGCTTAGTAGGGGAGGCGAGCGGGCATGTCACCAAACGAACGTCATTGGA
AGTGGCGGCTTACGCGGGCTGGATGGCGGCGGGCGTGGACGTGGAACAGG
AGCAGTGGGAAGCGGCTCTGGGTAAGCTGCGTACGGCGCACTCGATCCTG
AGCCAGCTAGGGGAGGTGGGGTCGGCGGAGGAGCAGGATTTGTTCTCGAG
TAAGGCGGAGGAAGTGATGCAGTCGGCCCGCTTTTGCCAATACAATTTAG
GGGAGGGCTCGCTTGAGGACCTGCAGCAGGTGCAGAGAGAATACGTCCCG
CAAGGGCTGAGGGAGAAGCTGGAGGCGGTGATGGAGGCCTCACGGACCGA
GGCGGCCACTGGCTTGGAGACCGTGGAGTGGGGCGGCCGGCACGTGCCTG
TTTCGAGCGCCGAGGTGCGGGTTGCCTTGGTGAAAGTAATTGAAGCTCGC
AAGCGTCTATATACCTCCAAAGAGAACGAAGAGGTGGGACAGCAGCAGAA
GCAGGAGCAGGAGAGCCAAAGGGAGGAAGCATACTCGAGTGTGTACGCAG
CCTACGATGAGGCCTTGAAGCGGGTAGCAGCGGCGGCGGACAAGGTCGAG
GGCATGAGCCATGGTGCCCGTGTGGACGCCCACAAGGAAGAGCTCAAACT
GCTGGCTAGCTACCTGCGGCACGGAAAGCTCGAGACCATGCGCCTGCGGA
AGGAGGTGTTGGTTCAGAGCTTGCTGCGAGGCAGCAATGCGGGCGGGAAA
CGGGAGGGGAGAGGGAGGCCGGAGGACCTGGTGCACGTGTTGGACGCCTT
GATGCAGAACGTGGTTGAGGTTCAGGCCTTGCCAGGTGTAGAAGAGCTCG
AGCCCGTCTTGACGCAAGCGCAGGCCCTCGAAGCTCGCTACCGGGCCCAG
CGTGCATTTTACCTGGCAGAGTGCTATGCAGGGGAGAAGAAGCTGGCCGA
GGCCATAGCCCTCTTCGCGAAGGCGGAGACTCTGGGGGAAATGGCGGTTA
GTCTGGCGAAAGAGGTGGTGGGGAAGGAGCAGAAGGAGGGCATGCTTAAG
GAGGCCCGAGAGGTGAAAGTAATGGCGGCGGGGGGTAGATGCCGAACTCA
AGCCTTGGCTCTGCTGGCTTCCTTGTCCCCGGCTGCTGCCAGTGGGGCGG
TGAGTGAGGAGGCGGCCTTGACGGTTGCACTCTCGGCGCTTTCGCTCTCG
GCCGCAACTGCTGCGCGAGCGGAAGATGGAGCGGAAAAAAGAAGCAAAGG
AATGAAGATGCAGCAGCAGCAGAAGAAGGGCAAGGATACGCGGTCGCCGC
AGCAGTCGGGCACGAGCACGGCAAAAGCAATGTCAGGCGCGTCATCGAGG
GGCCCAAAAGCAGGCACTGACTTTGAACCGGCGTCACGGACCTTGCTGGA
ACGGTTGGGGGAGATCGATGGCGGCAAGGAGATCAGTGGATTTGGTATCG
CGCGCATGCCACCCACGGTGATGCCGGTACGGGCCAAGCCCCAGCTTTTC
GATATGGCCTTCAACTTTCTGGAAGGACGCTTGCCAGACCTAGCTATCAA
AGCGGGTCTGCCCCCGAACAAGAGGGCAGGCCCACGGGGGGGAGAAGGTT
CGTCCGGAGTTGGAGGGTTGTTTGGGTGGTTGAGAGGATAG

Synonyms

Publications