jgi.p|Nanoce1779_2|615938, mRNA_11271 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|615938
Unique Name	mRNA_11271
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1416
Alignment location	scaffold_110:14347..16282 -

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Properties


Property Name	Value
TranscriptId	616024
Track	FilteredModels2
ProteinId	615938

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_110	supercontig	scaffold_110:14347..16282 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|615938	gene_11271	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|615938	mRNA_11271-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11271	CDS_11271	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_110:14347..16282-
coding sequence from alignment at scaffold_110:14347..16282-

mRNA sequence

>mRNA_11271 ID=mRNA_11271|Name=jgi.p|Nanoce1779_2|615938|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp
AGGGTCAGGTGGAGAGATAGAGAAGTAATCATGGGGCAAATTATGCAGCG
CGCGCTGGATGTGCTGTGGGGAAAAGAGGACAGGCGTCTCCTGATGCTGG
GTCTGGACGCAGCAGGAAAGACAACCATCCTGTACCGTTTGCAGCTGGGT
GAGGACGTGCACTCCATTCCCACCATCGGGTTCAACGTTGAGAAAGTGGA
GTACAGAAATATTTCTTTCACAATATGGGACGTGGGGGGACAAGATCGCT
TGCGAAAATTGTGGCGGCACTACTACAAAGATAATGACGCTCTTATCTTC
GTCATAGACTCGGCCGATCGTGCCCGCCTTTCAGAAGCCAAGGAAGAGCT
GTTCCACCTCCTGGCTGAACCACAGCTTCTGGACTCGATCCTTTTAGTGT
ACGCCAACAAGGCCGACCTCCCCCACGCCATCTCAGTGCAAGAAATGGCT
CATTTCCTCCAGCTGGACTCGGTGGCGAAGGGTCGTCCATGGTACATCCA
GCCTTCCTGTGCCATGACCGGCGATGGTCTTGTGGAGGGGCTAGACTGGT
TATCGGAGAAACTTAAGGAGGTAGGCTCGCACACACACCATGGTATTCGG
CAGGACGACACCATCCACCCTGCTGCGGCACTAAGACCAGCCGCAGGCTC
ATTCAATGCACCGGCCGGCGGGGGCTGGTAGGGAGGGAGAAAGGGAGGGA
TGGAGATGTAGGGGTGATGGTTGATTGCATAGGCTGAAAGAGGATGACAA
GGGGAGTGGTTAATAATTAGAGAAGGGAGAGAACAGGGTTGAGAAATGCC
TTTTGTCGCTCTTCCTCTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTTT
GTGTATGTGTGTGTGTGCAGCAGCGAATTATATATTAATTCATCTTGACG
TGTGTCGGAGCATGCCCTGAGTGTACATAAATGAAAAGGACAGAAAAGAG
AAAGGCAGGAAGATAAAGCGATAGAGGGGAGCAAGACAAGCGATTAAATG
GAGGGAGGGATTGAAAGAGGGAAAGGGAGAGGGCTACTGCGACTCGATCG
AACCTCCAGTAGCAGCAGTACTGGCACAGCAACGGCGAAGACAAAGAGGA
GAGGAACAGAAAGGAAAAGAATATGCGCAGAGAAATAATGACAACTCACA
AAGAGATGACCAAAGAAGCAACAGCATTAATAGCAGCCATGCATGGAAAG
CATTAAGGCATGCGTCCGCCACGATGTGTGGTCAGAAGACGTACACTCTT
GCACAAAGACGTGGGTTTGCTAACCCAAAATGAAAGTGGTAGAAATGAGT
ACGCATGCCCACAGCTCGCACAAGACGAGAAGACCGGAAAAAGCACGCAC
GAGAATAGACAAAATGTGGGGCATATTTCTCAATTTCTTCGATTCGTTTT
TTCGTTTTCATTTTCA

protein sequence of jgi.p|Nanoce1779_2|615938

>mRNA_11271-protein ID=mRNA_11271-protein|Name=jgi.p|Nanoce1779_2|615938|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MGQIMQRALDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIG
FNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARL
SEAKEELFHLLAEPQLLDSILLVYANKADLPHAISVQEMAHFLQLDSVAK
GRPWYIQPSCAMTGDGLVEGLDWLSEKLKEVGSHTHHGIRQDDTIHPAAA
LRPAAGSFNAPAGGGW*

mRNA from alignment at scaffold_110:14347..16282-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11271 ID=mRNA_11271|Name=jgi.p|Nanoce1779_2|615938|organism=Nannochloropsis oceanica|type=mRNA|length=1936bp|location=Sequence derived from alignment at scaffold_110:14347..16282- (Nannochloropsis oceanica)
AGGGTCAGGTGGAGAGATAGAGAAGTAATCATGGGGCAAATTATGCAGCG
CGCGCTGGATGTGCTGTGGGGAAAAGAGGACAGGTAGAGAGGGAGGGAGA
GGGGATGGGGGGGGAGGCTGGGATCGAGATCGTTAGAGGCTACCCATCCG
CTTTTCGAATTGAGTGCTCCAAGCACCGTCACCACACCCATGGGCAATTC
TCATACAACCTTTGTCGATAGGCGTCTCCTGATGCTGGGTCTGGACGCAG
CAGGAAAGACAACCATCCTGTACCGTTTGCAGCTGGGTGAGGACGTGCAC
TCCATTCCCACCATCGGGTTCAACGTTGAGAAAGTGGAGTACAGAAATAT
TTCTTTCACAATATGGGACGTGGGGGGACAAGATCGCTTGCGAAAGTACG
TAGGAGCGAGGCAGGGAGGGAGGGAGGGGATGAGTGAGGGAGGGAGGGCT
GAATGAATGGTGGCAAGTTCAGCAATCACTCACATGCCTACGTACTTCAA
ACCAGATTGTGGCGGCACTACTACAAAGATAATGACGCTCTTATCTTCGT
CATAGACTCGGCCGATCGTGCCCGCCTTTCAGAAGCCAAGGAAGAGCTGT
TCCACCTCCTGGCTGAACCACAGCTTCTGGACTCGATCCTTTTAGTGTAC
GCCAACAAGGCCGACCTCCCCCACGCCATCTCAGTGCAAGAAATGGCTCA
TTTCCTCCAGCTGGACTCGGTAGGTCAGCTTCACAAGCGAGCATAGAGAT
AATAGAGTTGCAAGGAGAGTGAGAGTGGAAGGTCTTCATCGCGAGACGGT
TTGCTTAAAACCCTCTTTTTTCCCTACCTTCACTCAGGTGGCGAAGGGTC
GTCCATGGTACATCCAGCCTTCCTGTGCCATGACCGGCGATGGTCTTGTG
GAGGGGCTAGACTGGTTATCGGAGAAACTTAAGGTGCGTTGGCCTTGCAC
ACTTCTTCCCCTCCTTTTCTCCTTCCTCCTCTCCCTCCTTGCCTCCCTCC
ACTTTCCCACTTTATCCTCTTCCTCCCCGCATATTCACTCACATTTCCCC
CTCTCCCTCCCAAACGCCCCCTTTTCTCCTCTCACAGGAGGTAGGCTCGC
ACACACACCATGGTATTCGGCAGGACGACACCATCCACCCTGCTGCGGCA
CTAAGACCAGCCGCAGGCTCATTCAATGCACCGGCCGGCGGGGGCTGGTA
GGGAGGGAGAAAGGGAGGGATGGAGATGTAGGGGTGATGGTTGATTGCAT
AGGCTGAAAGAGGATGACAAGGGGAGTGGTTAATAATTAGAGAAGGGAGA
GAACAGGGTTGAGAAATGCCTTTTGTCGCTCTTCCTCTGTGTGTGTTTGT
GTGTGTGTGTGTGTGTGTTTGTGTATGTGTGTGTGTGCAGCAGCGAATTA
TATATTAATTCATCTTGACGTGTGTCGGAGCATGCCCTGAGTGTACATAA
ATGAAAAGGACAGAAAAGAGAAAGGCAGGAAGATAAAGCGATAGAGGGGA
GCAAGACAAGCGATTAAATGGAGGGAGGGATTGAAAGAGGGAAAGGGAGA
GGGCTACTGCGACTCGATCGAACCTCCAGTAGCAGCAGTACTGGCACAGC
AACGGCGAAGACAAAGAGGAGAGGAACAGAAAGGAAAAGAATATGCGCAG
AGAAATAATGACAACTCACAAAGAGATGACCAAAGAAGCAACAGCATTAA
TAGCAGCCATGCATGGAAAGCATTAAGGCATGCGTCCGCCACGATGTGTG
GTCAGAAGACGTACACTCTTGCACAAAGACGTGGGTTTGCTAACCCAAAA
TGAAAGTGGTAGAAATGAGTACGCATGCCCACAGCTCGCACAAGACGAGA
AGACCGGAAAAAGCACGCACGAGAATAGACAAAATGTGGGGCATATTTCT
CAATTTCTTCGATTCGTTTTTTCGTTTTCATTTTCA

Coding sequence (CDS) from alignment at scaffold_110:14347..16282-

>mRNA_11271 ID=mRNA_11271|Name=jgi.p|Nanoce1779_2|615938|organism=Nannochloropsis oceanica|type=CDS|length=3255bp|location=Sequence derived from alignment at scaffold_110:14347..16282- (Nannochloropsis oceanica)
GAGGTAGGCTCGCACACACACCATGGTATTCGGCAGGACGACACCATCCA
CCCTGCTGCGGCACTAAGACCAGCCGCAGGCTCATTCAATGCACCGGCCG
GCGGGGGCTGGTAGGTGGCGAAGGGTCGTCCATGGTACATCCAGCCTTCC
TGTGCCATGACCGGCGATGGTCTTGTGGAGGGGCTAGACTGGTTATCGGA
GAAACTTAAGATTGTGGCGGCACTACTACAAAGATAATGACGCTCTTATC
TTCGTCATAGACTCGGCCGATCGTGCCCGCCTTTCAGAAGCCAAGGAAGA
GCTGTTCCACCTCCTGGCTGAACCACAGCTTCTGGACTCGATCCTTTTAG
TGTACGCCAACAAGGCCGACCTCCCCCACGCCATCTCAGTGCAAGAAATG
GCTCATTTCCTCCAGCTGGACTCGGCGTCTCCTGATGCTGGGTCTGGACG
CAGCAGGAAAGACAACCATCCTGTACCGTTTGCAGCTGGGTGAGGACGTG
CACTCCATTCCCACCATCGGGTTCAACGTTGAGAAAGTGGAGTACAGAAA
TATTTCTTTCACAATATGGGACGTGGGGGGACAAGATCGCTTGCGAAAAT
GGGGCAAATTATGCAGCGCGCGCTGGATGTGCTGTGGGGAAAAGAGGACA
GGAGGTAGGCTCGCACACACACCATGGTATTCGGCAGGACGACACCATCC
ACCCTGCTGCGGCACTAAGACCAGCCGCAGGCTCATTCAATGCACCGGCC
GGCGGGGGCTGGTAGGTGGCGAAGGGTCGTCCATGGTACATCCAGCCTTC
CTGTGCCATGACCGGCGATGGTCTTGTGGAGGGGCTAGACTGGTTATCGG
AGAAACTTAAGATTGTGGCGGCACTACTACAAAGATAATGACGCTCTTAT
CTTCGTCATAGACTCGGCCGATCGTGCCCGCCTTTCAGAAGCCAAGGAAG
AGCTGTTCCACCTCCTGGCTGAACCACAGCTTCTGGACTCGATCCTTTTA
GTGTACGCCAACAAGGCCGACCTCCCCCACGCCATCTCAGTGCAAGAAAT
GGCTCATTTCCTCCAGCTGGACTCGGCGTCTCCTGATGCTGGGTCTGGAC
GCAGCAGGAAAGACAACCATCCTGTACCGTTTGCAGCTGGGTGAGGACGT
GCACTCCATTCCCACCATCGGGTTCAACGTTGAGAAAGTGGAGTACAGAA
ATATTTCTTTCACAATATGGGACGTGGGGGGACAAGATCGCTTGCGAAAA
TGGGGCAAATTATGCAGCGCGCGCTGGATGTGCTGTGGGGAAAAGAGGAC
AGGAGGTAGGCTCGCACACACACCATGGTATTCGGCAGGACGACACCATC
CACCCTGCTGCGGCACTAAGACCAGCCGCAGGCTCATTCAATGCACCGGC
CGGCGGGGGCTGGTAGGTGGCGAAGGGTCGTCCATGGTACATCCAGCCTT
CCTGTGCCATGACCGGCGATGGTCTTGTGGAGGGGCTAGACTGGTTATCG
GAGAAACTTAAGATTGTGGCGGCACTACTACAAAGATAATGACGCTCTTA
TCTTCGTCATAGACTCGGCCGATCGTGCCCGCCTTTCAGAAGCCAAGGAA
GAGCTGTTCCACCTCCTGGCTGAACCACAGCTTCTGGACTCGATCCTTTT
AGTGTACGCCAACAAGGCCGACCTCCCCCACGCCATCTCAGTGCAAGAAA
TGGCTCATTTCCTCCAGCTGGACTCGGCGTCTCCTGATGCTGGGTCTGGA
CGCAGCAGGAAAGACAACCATCCTGTACCGTTTGCAGCTGGGTGAGGACG
TGCACTCCATTCCCACCATCGGGTTCAACGTTGAGAAAGTGGAGTACAGA
AATATTTCTTTCACAATATGGGACGTGGGGGGACAAGATCGCTTGCGAAA
ATGGGGCAAATTATGCAGCGCGCGCTGGATGTGCTGTGGGGAAAAGAGGA
CAGGAGGTAGGCTCGCACACACACCATGGTATTCGGCAGGACGACACCAT
CCACCCTGCTGCGGCACTAAGACCAGCCGCAGGCTCATTCAATGCACCGG
CCGGCGGGGGCTGGTAGGTGGCGAAGGGTCGTCCATGGTACATCCAGCCT
TCCTGTGCCATGACCGGCGATGGTCTTGTGGAGGGGCTAGACTGGTTATC
GGAGAAACTTAAGATTGTGGCGGCACTACTACAAAGATAATGACGCTCTT
ATCTTCGTCATAGACTCGGCCGATCGTGCCCGCCTTTCAGAAGCCAAGGA
AGAGCTGTTCCACCTCCTGGCTGAACCACAGCTTCTGGACTCGATCCTTT
TAGTGTACGCCAACAAGGCCGACCTCCCCCACGCCATCTCAGTGCAAGAA
ATGGCTCATTTCCTCCAGCTGGACTCGGCGTCTCCTGATGCTGGGTCTGG
ACGCAGCAGGAAAGACAACCATCCTGTACCGTTTGCAGCTGGGTGAGGAC
GTGCACTCCATTCCCACCATCGGGTTCAACGTTGAGAAAGTGGAGTACAG
AAATATTTCTTTCACAATATGGGACGTGGGGGGACAAGATCGCTTGCGAA
AATGGGGCAAATTATGCAGCGCGCGCTGGATGTGCTGTGGGGAAAAGAGG
ACAGGAGGTAGGCTCGCACACACACCATGGTATTCGGCAGGACGACACCA
TCCACCCTGCTGCGGCACTAAGACCAGCCGCAGGCTCATTCAATGCACCG
GCCGGCGGGGGCTGGTAGGTGGCGAAGGGTCGTCCATGGTACATCCAGCC
TTCCTGTGCCATGACCGGCGATGGTCTTGTGGAGGGGCTAGACTGGTTAT
CGGAGAAACTTAAGATTGTGGCGGCACTACTACAAAGATAATGACGCTCT
TATCTTCGTCATAGACTCGGCCGATCGTGCCCGCCTTTCAGAAGCCAAGG
AAGAGCTGTTCCACCTCCTGGCTGAACCACAGCTTCTGGACTCGATCCTT
TTAGTGTACGCCAACAAGGCCGACCTCCCCCACGCCATCTCAGTGCAAGA
AATGGCTCATTTCCTCCAGCTGGACTCGGCGTCTCCTGATGCTGGGTCTG
GACGCAGCAGGAAAGACAACCATCCTGTACCGTTTGCAGCTGGGTGAGGA
CGTGCACTCCATTCCCACCATCGGGTTCAACGTTGAGAAAGTGGAGTACA
GAAATATTTCTTTCACAATATGGGACGTGGGGGGACAAGATCGCTTGCGA
AAATGGGGCAAATTATGCAGCGCGCGCTGGATGTGCTGTGGGGAAAAGAG
GACAG

Synonyms

Publications